Definition | Methanosphaera stadtmanae DSM 3091 chromosome, complete genome. |
---|---|
Accession | NC_007681 |
Length | 1,767,403 |
Click here to switch to the map view.
The map label for this gene is mtaD
Identifier: 84489028
GI number: 84489028
Start: 246296
End: 247573
Strand: Direct
Name: mtaD
Synonym: Msp_0200
Alternate gene names: 84489028
Gene position: 246296-247573 (Clockwise)
Preceding gene: 84489025
Following gene: 84489031
Centisome position: 13.94
GC content: 30.2
Gene sequence:
>1278_bases ATGAGTGAAACAACAAGTATATTAATTAAAGATACCACTATTTTATCAGATAAAATAAAAAAAGCATCCATATTAATTGT AGATAATACTATTGAAGAGATAAGTAATGATTTATCAGTGACTGATGCAAGTAAAGTTATTGATGGAACAAATAAGATAA CAATGCCTGGCCTTGTTAACACACACTCTCATGTGGCAATGACACTGCTTAGAGGAGTAGGTGATGATGAAGAATTACAA ACATGGCTTAATGATTATATATGGCCTAAAGAAGCAAAACTGGATGAAAAATTAGTATATGCTGGTTCAAAGTTGGCAAT GGCTGAAATGATAAAAACAGGTACAACAACTTTTAATGATATGTATTTCTATATGGAAGAAACTGCAAAGGCAGTTGAAG AATCAGGAATAAGGGGAGTTTTAGGTTATGGTATGATTGATCTTTTTGATGATGAAAAAAGAAAACAAGAAATTAAAGCA ACAAAAAATCTTATAAAAAACTCACACAATACTGCTAATGGTAGAGTACAAGTAGCAGTAGCACCGCATGCTCCATATAC TTGTTCTAAGGAATTATTAAGTGAATCTAAAAAATTAGCTAATAAACATAATCTAAAATTACATATACATGTTTCAGAAA CACAACAAGAAGTAAATGATTTAGAAAAACAGAGAAATCAAACACCATTTGAATATTTGGATAGTATAGATTTGCTTGAT GAAAATACTATTGCAGCACATGGAGTATGGACAACAGATAATGAAATGAAACTTCTTAAAGAAAAACAAGTATCCATATC ACATAATCCATCAAGTAATATGAAATTAGCATCAGGTATTGCACCAGTTAGTAAATATATTAAAAATGATATTAATGTAG CAATAGGTACTGATGGAGTATCTTCAAATAACAATCTAGACATGTTTAGTGAAATGAAACTAACAGCACTTCTACAGAAA GTAAATACTATGAATGCAAAAACACTACCAGCACAAGCAACATTCAATATGGCAACAGAGAATGGTGCTAGAGCATTAGG TATAAATACAGGTTCTATAAAAGAAGGTAAACTAGCAGATATTGTACTTGTTAATATGAATGTTCCACATATGATACCTG TTAGAAATCCATTAAGTAACATAATATACTCAGCATTAGGTAGTGATGTTGATACAGTAATATGTGATGGACAACTACTT CTAGAAGATAAGAAATTATTAACAATCAATGAAGAAGATGCTATTTATGATGCAAAATTAGCAGCACAACAGCTATAA
Upstream 100 bases:
>100_bases TTTAATATAATAACTCATATTTTTCTATTAGAAAAATAACTATAAAAATAATTAGATTGTATTATATAACTATTTTATAA CAATAAAATGAGGATTATGT
Downstream 100 bases:
>100_bases AAAAAAGTATATGCTGGAAGCATATCTATTTAGCATATTCTCCAATACTTGAGAACTTCTCAATAATATCTTCTTTTTTT AATTCTTTTTGTGGTATGGA
Product: N-ethylammeline chlorohydrolase
Products: NA
Alternate protein names: MTA/SAH deaminase
Number of amino acids: Translated: 425; Mature: 424
Protein sequence:
>425_residues MSETTSILIKDTTILSDKIKKASILIVDNTIEEISNDLSVTDASKVIDGTNKITMPGLVNTHSHVAMTLLRGVGDDEELQ TWLNDYIWPKEAKLDEKLVYAGSKLAMAEMIKTGTTTFNDMYFYMEETAKAVEESGIRGVLGYGMIDLFDDEKRKQEIKA TKNLIKNSHNTANGRVQVAVAPHAPYTCSKELLSESKKLANKHNLKLHIHVSETQQEVNDLEKQRNQTPFEYLDSIDLLD ENTIAAHGVWTTDNEMKLLKEKQVSISHNPSSNMKLASGIAPVSKYIKNDINVAIGTDGVSSNNNLDMFSEMKLTALLQK VNTMNAKTLPAQATFNMATENGARALGINTGSIKEGKLADIVLVNMNVPHMIPVRNPLSNIIYSALGSDVDTVICDGQLL LEDKKLLTINEEDAIYDAKLAAQQL
Sequences:
>Translated_425_residues MSETTSILIKDTTILSDKIKKASILIVDNTIEEISNDLSVTDASKVIDGTNKITMPGLVNTHSHVAMTLLRGVGDDEELQ TWLNDYIWPKEAKLDEKLVYAGSKLAMAEMIKTGTTTFNDMYFYMEETAKAVEESGIRGVLGYGMIDLFDDEKRKQEIKA TKNLIKNSHNTANGRVQVAVAPHAPYTCSKELLSESKKLANKHNLKLHIHVSETQQEVNDLEKQRNQTPFEYLDSIDLLD ENTIAAHGVWTTDNEMKLLKEKQVSISHNPSSNMKLASGIAPVSKYIKNDINVAIGTDGVSSNNNLDMFSEMKLTALLQK VNTMNAKTLPAQATFNMATENGARALGINTGSIKEGKLADIVLVNMNVPHMIPVRNPLSNIIYSALGSDVDTVICDGQLL LEDKKLLTINEEDAIYDAKLAAQQL >Mature_424_residues SETTSILIKDTTILSDKIKKASILIVDNTIEEISNDLSVTDASKVIDGTNKITMPGLVNTHSHVAMTLLRGVGDDEELQT WLNDYIWPKEAKLDEKLVYAGSKLAMAEMIKTGTTTFNDMYFYMEETAKAVEESGIRGVLGYGMIDLFDDEKRKQEIKAT KNLIKNSHNTANGRVQVAVAPHAPYTCSKELLSESKKLANKHNLKLHIHVSETQQEVNDLEKQRNQTPFEYLDSIDLLDE NTIAAHGVWTTDNEMKLLKEKQVSISHNPSSNMKLASGIAPVSKYIKNDINVAIGTDGVSSNNNLDMFSEMKLTALLQKV NTMNAKTLPAQATFNMATENGARALGINTGSIKEGKLADIVLVNMNVPHMIPVRNPLSNIIYSALGSDVDTVICDGQLLL EDKKLLTINEEDAIYDAKLAAQQL
Specific function: Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine
COG id: COG0402
COG function: function code FR; Cytosine deaminase and related metal-dependent hydrolases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MTA/SAH deaminase family
Homologues:
Organism=Homo sapiens, GI4758426, Length=338, Percent_Identity=29.2899408284024, Blast_Score=133, Evalue=3e-31, Organism=Escherichia coli, GI87082177, Length=380, Percent_Identity=25, Blast_Score=111, Evalue=1e-25, Organism=Escherichia coli, GI1789249, Length=410, Percent_Identity=26.5853658536585, Blast_Score=109, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17540282, Length=384, Percent_Identity=26.0416666666667, Blast_Score=105, Evalue=3e-23, Organism=Saccharomyces cerevisiae, GI6319963, Length=341, Percent_Identity=28.1524926686217, Blast_Score=107, Evalue=4e-24, Organism=Drosophila melanogaster, GI24643849, Length=363, Percent_Identity=28.099173553719, Blast_Score=128, Evalue=6e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MTAD_METST (Q2NHL6)
Other databases:
- EMBL: CP000102 - RefSeq: YP_447260.1 - ProteinModelPortal: Q2NHL6 - SMR: Q2NHL6 - STRING: Q2NHL6 - GeneID: 3855574 - GenomeReviews: CP000102_GR - KEGG: mst:Msp_0200 - NMPDR: fig|339860.6.peg.197 - eggNOG: arNOG04550 - HOGENOM: HBG668170 - OMA: KENIESH - PhylomeDB: Q2NHL6 - ProtClustDB: PRK06038 - BioCyc: MSTA339860:MSP_0200-MONOMER - HAMAP: MF_01281 - InterPro: IPR006680 - InterPro: IPR011059
Pfam domain/function: PF01979 Amidohydro_1; SSF51338 Metalo_hydrolase
EC number: =3.5.4.28
Molecular weight: Translated: 46882; Mature: 46751
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: NA
Important sites: BINDING 91-91 BINDING 183-183 BINDING 213-213 BINDING 298-298
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSETTSILIKDTTILSDKIKKASILIVDNTIEEISNDLSVTDASKVIDGTNKITMPGLVN CCCCEEEEEECCCHHHHCCCEEEEEEEECHHHHHCCCCCCCCHHHHHCCCCCEECCCCCC THSHVAMTLLRGVGDDEELQTWLNDYIWPKEAKLDEKLVYAGSKLAMAEMIKTGTTTFND CHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCCHHH MYFYMEETAKAVEESGIRGVLGYGMIDLFDDEKRKQEIKATKNLIKNSHNTANGRVQVAV HEEHHHHHHHHHHHCCCCEEHHCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEE APHAPYTCSKELLSESKKLANKHNLKLHIHVSETQQEVNDLEKQRNQTPFEYLDSIDLLD CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCHHHHCCHHHCC ENTIAAHGVWTTDNEMKLLKEKQVSISHNPSSNMKLASGIAPVSKYIKNDINVAIGTDGV CCCEEECEEEECCCHHHHHHHHCCEECCCCCCCCCHHHCHHHHHHHHHCCCEEEEECCCC SSNNNLDMFSEMKLTALLQKVNTMNAKTLPAQATFNMATENGARALGINTGSIKEGKLAD CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCEEE IVLVNMNVPHMIPVRNPLSNIIYSALGSDVDTVICDGQLLLEDKKLLTINEEDAIYDAKL EEEEECCCCCEEECCCHHHHHHHHHHCCCCCEEEECCEEEEECCEEEEECCCCCHHHHHH AAQQL HHHCC >Mature Secondary Structure SETTSILIKDTTILSDKIKKASILIVDNTIEEISNDLSVTDASKVIDGTNKITMPGLVN CCCEEEEEECCCHHHHCCCEEEEEEEECHHHHHCCCCCCCCHHHHHCCCCCEECCCCCC THSHVAMTLLRGVGDDEELQTWLNDYIWPKEAKLDEKLVYAGSKLAMAEMIKTGTTTFND CHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCCHHH MYFYMEETAKAVEESGIRGVLGYGMIDLFDDEKRKQEIKATKNLIKNSHNTANGRVQVAV HEEHHHHHHHHHHHCCCCEEHHCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEE APHAPYTCSKELLSESKKLANKHNLKLHIHVSETQQEVNDLEKQRNQTPFEYLDSIDLLD CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCHHHHCCHHHCC ENTIAAHGVWTTDNEMKLLKEKQVSISHNPSSNMKLASGIAPVSKYIKNDINVAIGTDGV CCCEEECEEEECCCHHHHHHHHCCEECCCCCCCCCHHHCHHHHHHHHHCCCEEEEECCCC SSNNNLDMFSEMKLTALLQKVNTMNAKTLPAQATFNMATENGARALGINTGSIKEGKLAD CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCEEE IVLVNMNVPHMIPVRNPLSNIIYSALGSDVDTVICDGQLLLEDKKLLTINEEDAIYDAKL EEEEECCCCCEEECCCHHHHHHHHHHCCCCCEEEECCEEEEECCEEEEECCCCCHHHHHH AAQQL HHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA