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The map label for this gene is ybhR [H]

Identifier: 84489024

GI number: 84489024

Start: 241432

End: 242559

Strand: Direct

Name: ybhR [H]

Synonym: Msp_0196

Alternate gene names: 84489024

Gene position: 241432-242559 (Clockwise)

Preceding gene: 84489023

Following gene: 84489025

Centisome position: 13.66

GC content: 31.21

Gene sequence:

>1128_bases
ATGGCAGAAATTAATAAGATAAAATGGATGATTAAAAAGGATCTCCTAACATTATGGAGACATAAAGTTCAATTTGCATC
TTTAATTCTATTTCCAATTTTAATGATTGCCTTATGTGGATGGGGTATGGGAGGAACAGTAGAAAACACTCCTGTAGTCG
TTGTAAAACAATCATCTGGTGATGTAACAGATCAAGTAATCAATGCATTAAAAGCAGATGATACATTTGATATAAAGGAC
ATAATGACAAATTCGGATGATGCAAAGGAAAAAGTAGATAATGGTGAAGTTAAAGCAGCAATCATACTTTCAAGTGACTT
TGAAAGTTCAAATTCAAAGAATGCAGTCTTATATATTGACTCATCAGATCAACTGACAACACAAACACTAGTTCCAAAAA
CAGAACAAATATTTGCCTCACTATCAGAAAAAGTAGGAACACAACAAGTAAATGCAAACACCACAACAAATCCAATAACA
CAAACAGCACAAACAATAAAATTACAAGTTAATAAGATATATGGTGATTTAGATTACATAGATTTCCTATTACCTGGAGT
ACTTGCAATGACAATGTTTATGTCATCTATGATGACAATGGGAAACAGTATTGCAGGAGAACGTGAACGTGGAGAATTAT
CAAGACTATTTATGACACCAACAAATGTATCATCAGTACTAACAGGTAAAATAATATCACAAGTAGTAAGAGAACTTATC
AGAGCTTTAGTCTTAATAATAGCAGCTATGCTACTATTTAATGTAATGATAAAAGGTAATTTATTACTATTGGTACTTGT
AATACTAATAGCAGTATTATGTTTTGTAGGTTTTGGAATGATGTTTTCAGCTACTGCAAAAACACAAGAAGATTATATTC
AAATAGTAATGCCAGTTGCAATGCCAATGATGTTTATATGTGGAGTATTTTTCCCTACAGAAACAATGCCATGGATTTTA
CAAAAAATTGCACTATTCTTACCTCTAACATATGCAAATGATGCATTCAGGGCTGTAATGTTAAAAGGTGCAGGATTAGG
TTCAATAGCATTTGATTTAATAGTATTATTAGCATTTGCACTACTATTTTTCATAGTAGGAATTGTAAGATTTAATAGGG
ATGTTTAA

Upstream 100 bases:

>100_bases
TTAAGTAATGGTGGAAATATAGCTTCAATAAAAACGAATGATCCTACATTAGAAGATGTATTTGTAGCTATCACTGCAAA
ACAAAGAACGGAGATTAAAA

Downstream 100 bases:

>100_bases
GTAGGAGGTATGAAAATAATGAAAAGCAATATGAAAAAATTAGGTGTATGTTTTATTATATTATGTGTTCTCATGGGAAG
CTTATCTTCTCTAGCTGCAG

Product: ABC-type multidrug transport system, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MAEINKIKWMIKKDLLTLWRHKVQFASLILFPILMIALCGWGMGGTVENTPVVVVKQSSGDVTDQVINALKADDTFDIKD
IMTNSDDAKEKVDNGEVKAAIILSSDFESSNSKNAVLYIDSSDQLTTQTLVPKTEQIFASLSEKVGTQQVNANTTTNPIT
QTAQTIKLQVNKIYGDLDYIDFLLPGVLAMTMFMSSMMTMGNSIAGERERGELSRLFMTPTNVSSVLTGKIISQVVRELI
RALVLIIAAMLLFNVMIKGNLLLLVLVILIAVLCFVGFGMMFSATAKTQEDYIQIVMPVAMPMMFICGVFFPTETMPWIL
QKIALFLPLTYANDAFRAVMLKGAGLGSIAFDLIVLLAFALLFFIVGIVRFNRDV

Sequences:

>Translated_375_residues
MAEINKIKWMIKKDLLTLWRHKVQFASLILFPILMIALCGWGMGGTVENTPVVVVKQSSGDVTDQVINALKADDTFDIKD
IMTNSDDAKEKVDNGEVKAAIILSSDFESSNSKNAVLYIDSSDQLTTQTLVPKTEQIFASLSEKVGTQQVNANTTTNPIT
QTAQTIKLQVNKIYGDLDYIDFLLPGVLAMTMFMSSMMTMGNSIAGERERGELSRLFMTPTNVSSVLTGKIISQVVRELI
RALVLIIAAMLLFNVMIKGNLLLLVLVILIAVLCFVGFGMMFSATAKTQEDYIQIVMPVAMPMMFICGVFFPTETMPWIL
QKIALFLPLTYANDAFRAVMLKGAGLGSIAFDLIVLLAFALLFFIVGIVRFNRDV
>Mature_374_residues
AEINKIKWMIKKDLLTLWRHKVQFASLILFPILMIALCGWGMGGTVENTPVVVVKQSSGDVTDQVINALKADDTFDIKDI
MTNSDDAKEKVDNGEVKAAIILSSDFESSNSKNAVLYIDSSDQLTTQTLVPKTEQIFASLSEKVGTQQVNANTTTNPITQ
TAQTIKLQVNKIYGDLDYIDFLLPGVLAMTMFMSSMMTMGNSIAGERERGELSRLFMTPTNVSSVLTGKIISQVVRELIR
ALVLIIAAMLLFNVMIKGNLLLLVLVILIAVLCFVGFGMMFSATAKTQEDYIQIVMPVAMPMMFICGVFFPTETMPWILQ
KIALFLPLTYANDAFRAVMLKGAGLGSIAFDLIVLLAFALLFFIVGIVRFNRDV

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787010, Length=342, Percent_Identity=21.6374269005848, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787011, Length=343, Percent_Identity=18.6588921282799, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24650855, Length=367, Percent_Identity=23.1607629427793, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24650853, Length=367, Percent_Identity=23.1607629427793, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI85725260, Length=309, Percent_Identity=21.6828478964401, Blast_Score=88, Evalue=9e-18,
Organism=Drosophila melanogaster, GI85725262, Length=305, Percent_Identity=21.6393442622951, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24582014, Length=412, Percent_Identity=21.3592233009709, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24582012, Length=412, Percent_Identity=21.3592233009709, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 41373; Mature: 41242

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEINKIKWMIKKDLLTLWRHKVQFASLILFPILMIALCGWGMGGTVENTPVVVVKQSSG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCC
DVTDQVINALKADDTFDIKDIMTNSDDAKEKVDNGEVKAAIILSSDFESSNSKNAVLYID
CHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEEEE
SSDQLTTQTLVPKTEQIFASLSEKVGTQQVNANTTTNPITQTAQTIKLQVNKIYGDLDYI
CCCCCCHHHHCCCHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
DFLLPGVLAMTMFMSSMMTMGNSIAGERERGELSRLFMTPTNVSSVLTGKIISQVVRELI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCHHHHHEECCCCHHHHHHHHHHHHHHHHHH
RALVLIIAAMLLFNVMIKGNLLLLVLVILIAVLCFVGFGMMFSATAKTQEDYIQIVMPVA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MPMMFICGVFFPTETMPWILQKIALFLPLTYANDAFRAVMLKGAGLGSIAFDLIVLLAFA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
LLFFIVGIVRFNRDV
HHHHHHHHHHHCCCC
>Mature Secondary Structure 
AEINKIKWMIKKDLLTLWRHKVQFASLILFPILMIALCGWGMGGTVENTPVVVVKQSSG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCC
DVTDQVINALKADDTFDIKDIMTNSDDAKEKVDNGEVKAAIILSSDFESSNSKNAVLYID
CHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEEEE
SSDQLTTQTLVPKTEQIFASLSEKVGTQQVNANTTTNPITQTAQTIKLQVNKIYGDLDYI
CCCCCCHHHHCCCHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
DFLLPGVLAMTMFMSSMMTMGNSIAGERERGELSRLFMTPTNVSSVLTGKIISQVVRELI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCHHHHHEECCCCHHHHHHHHHHHHHHHHHH
RALVLIIAAMLLFNVMIKGNLLLLVLVILIAVLCFVGFGMMFSATAKTQEDYIQIVMPVA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MPMMFICGVFFPTETMPWILQKIALFLPLTYANDAFRAVMLKGAGLGSIAFDLIVLLAFA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
LLFFIVGIVRFNRDV
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]