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The map label for this gene is lpxC [H]

Identifier: 83720262

GI number: 83720262

Start: 1270562

End: 1271509

Strand: Direct

Name: lpxC [H]

Synonym: BTH_I1125

Alternate gene names: 83720262

Gene position: 1270562-1271509 (Clockwise)

Preceding gene: 83719595

Following gene: 83721069

Centisome position: 33.36

GC content: 63.5

Gene sequence:

>948_bases
TTGATATCCTCAATCAAGAAGACTGTGACCATGTTGAAGCAGCGCACCATCAAATCGATCGTCAAGACTGTCGGCATCGG
CCTGCACTCGGGCCGCAAGGTCGAACTGACGCTTCGCCCCGCGGCGCCGGACACGGGCATCGTGTTCTCGCGCGTCGATC
TGCCGACGCCCGTCGACATTCCGGCTTCGGCGCTGTCGATCGGCGACACGCGGCTCGCGTCCGTGCTGCAGAAGGACGGC
GCGCGCGTGTCGACGGTCGAGCATCTGATGTCGGCGTGTGCGGGCCTCGGCATCGACAACCTCTACGTCGACGTGACGGC
CGAGGAAATCCCGATCATGGACGGCAGTGCGGCGTCGTTCGTGTTCCTGATCCAGTCGGCCGGCATCGAAGAGCAGAACG
CGGCGAAGAAGTTCATCAAGGTGACGAAGCCCGTCGAGATTCGCGACGGCGACAAGTTCGCGCGTCTCGATCCCTACTTC
GGCTTCAAGCTGAAGTTCACGATCGATTTCCGCCATCCGGCCGTCGACAAGACGGGCCAGGAACTCGAGGTTGACTTCGC
GAACACGTCGTACGTGCGCGAGATCGCGCGCGCGCGCACATTCGGCTTCGCGCACGAGGTCGAGATGATGCGCGAGCTCG
GGCTGGCGCGCGGCGGCAGCATGGACAACGCGATCGTGCTCGACGAATACCGGATTCTCAATAACGACGGACTCCGCTAC
GACGACGAGTTCGTCAAGCACAAGATGCTCGACGCGATCGGCGATCTGTACGTGGTCGGCCATCCGCTCCTCGCGTCGTA
CACCGCGTACAAGTCGGGCCACGGGCTGAACAATGCGCTGCTGCGCGAGCTGCTCGCGCACGAGGACGCCTACGAGATCG
TGACGTTCGACGATCCGAAGGCGGCGCCGACGGGCTTCGGCTTCGACGCGCAGACGGCATTCGCGTGA

Upstream 100 bases:

>100_bases
TTTGCGCAGGGTAATGCGTCGAAACAGTTTGAAACGCCGATCATCGCGACGCGAAATAGGGATTTACGCTATAATCTCGC
CTATCGAATAAAACTCCTGA

Downstream 100 bases:

>100_bases
TGCGCTGACGCGTCGCGTACGCAAGACGACGACAAGAAGGCGGCCTGCGGGCCGCTTTTTTTATTGCGTCGGGCATGTTC
GCCGGGCCGCGCGGGCCGGC

Product: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

Products: UDP-3-O-(3-Hydroxytetradecanoyl)- Glucosamine; Acetate. [C]

Alternate protein names: UDP-3-O-acyl-GlcNAc deacetylase [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MISSIKKTVTMLKQRTIKSIVKTVGIGLHSGRKVELTLRPAAPDTGIVFSRVDLPTPVDIPASALSIGDTRLASVLQKDG
ARVSTVEHLMSACAGLGIDNLYVDVTAEEIPIMDGSAASFVFLIQSAGIEEQNAAKKFIKVTKPVEIRDGDKFARLDPYF
GFKLKFTIDFRHPAVDKTGQELEVDFANTSYVREIARARTFGFAHEVEMMRELGLARGGSMDNAIVLDEYRILNNDGLRY
DDEFVKHKMLDAIGDLYVVGHPLLASYTAYKSGHGLNNALLRELLAHEDAYEIVTFDDPKAAPTGFGFDAQTAFA

Sequences:

>Translated_315_residues
MISSIKKTVTMLKQRTIKSIVKTVGIGLHSGRKVELTLRPAAPDTGIVFSRVDLPTPVDIPASALSIGDTRLASVLQKDG
ARVSTVEHLMSACAGLGIDNLYVDVTAEEIPIMDGSAASFVFLIQSAGIEEQNAAKKFIKVTKPVEIRDGDKFARLDPYF
GFKLKFTIDFRHPAVDKTGQELEVDFANTSYVREIARARTFGFAHEVEMMRELGLARGGSMDNAIVLDEYRILNNDGLRY
DDEFVKHKMLDAIGDLYVVGHPLLASYTAYKSGHGLNNALLRELLAHEDAYEIVTFDDPKAAPTGFGFDAQTAFA
>Mature_315_residues
MISSIKKTVTMLKQRTIKSIVKTVGIGLHSGRKVELTLRPAAPDTGIVFSRVDLPTPVDIPASALSIGDTRLASVLQKDG
ARVSTVEHLMSACAGLGIDNLYVDVTAEEIPIMDGSAASFVFLIQSAGIEEQNAAKKFIKVTKPVEIRDGDKFARLDPYF
GFKLKFTIDFRHPAVDKTGQELEVDFANTSYVREIARARTFGFAHEVEMMRELGLARGGSMDNAIVLDEYRILNNDGLRY
DDEFVKHKMLDAIGDLYVVGHPLLASYTAYKSGHGLNNALLRELLAHEDAYEIVTFDDPKAAPTGFGFDAQTAFA

Specific function: Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell [H]

COG id: COG0774

COG function: function code M; UDP-3-O-acyl-N-acetylglucosamine deacetylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lpxC family [H]

Homologues:

Organism=Escherichia coli, GI1786285, Length=297, Percent_Identity=55.2188552188552, Blast_Score=357, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020568
- InterPro:   IPR004463
- InterPro:   IPR011334
- InterPro:   IPR015870 [H]

Pfam domain/function: PF03331 LpxC [H]

EC number: 3.5.1.- [C]

Molecular weight: Translated: 34531; Mature: 34531

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSIKKTVTMLKQRTIKSIVKTVGIGLHSGRKVELTLRPAAPDTGIVFSRVDLPTPVDI
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCC
PASALSIGDTRLASVLQKDGARVSTVEHLMSACAGLGIDNLYVDVTAEEIPIMDGSAASF
CCHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCCCCHHHE
VFLIQSAGIEEQNAAKKFIKVTKPVEIRDGDKFARLDPYFGFKLKFTIDFRHPAVDKTGQ
EEEEECCCCCHHHHHHHHHHHCCCEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCC
ELEVDFANTSYVREIARARTFGFAHEVEMMRELGLARGGSMDNAIVLDEYRILNNDGLRY
EEEEEECCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCEEEEECEEEECCCCCCC
DDEFVKHKMLDAIGDLYVVGHPLLASYTAYKSGHGLNNALLRELLAHEDAYEIVTFDDPK
CHHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEECCCC
AAPTGFGFDAQTAFA
CCCCCCCCCCCCCCC
>Mature Secondary Structure
MISSIKKTVTMLKQRTIKSIVKTVGIGLHSGRKVELTLRPAAPDTGIVFSRVDLPTPVDI
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCC
PASALSIGDTRLASVLQKDGARVSTVEHLMSACAGLGIDNLYVDVTAEEIPIMDGSAASF
CCHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCCCCHHHE
VFLIQSAGIEEQNAAKKFIKVTKPVEIRDGDKFARLDPYFGFKLKFTIDFRHPAVDKTGQ
EEEEECCCCCHHHHHHHHHHHCCCEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCC
ELEVDFANTSYVREIARARTFGFAHEVEMMRELGLARGGSMDNAIVLDEYRILNNDGLRY
EEEEEECCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCEEEEECEEEECCCCCCC
DDEFVKHKMLDAIGDLYVVGHPLLASYTAYKSGHGLNNALLRELLAHEDAYEIVTFDDPK
CHHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEECCCC
AAPTGFGFDAQTAFA
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: UDP-3-O-(3-Hydroxytetradecanoyl)-N- Acetylglucosamine; H2O [C]

Specific reaction: UDP-3-O-(3-Hydroxytetradecanoyl)-N- Acetylglucosamine + H2O = UDP-3-O-(3-Hydroxytetradecanoyl)- Glucosamine + Acetate. [C]

General reaction: Hydrolase; Acting on carbon-nitrogen bonds, other than peptide bonds; In linear amides [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA