| Definition | Burkholderia thailandensis E264 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_007651 |
| Length | 3,809,201 |
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The map label for this gene is ybbP [H]
Identifier: 83720259
GI number: 83720259
Start: 1167594
End: 1170203
Strand: Direct
Name: ybbP [H]
Synonym: BTH_I1029
Alternate gene names: 83720259
Gene position: 1167594-1170203 (Clockwise)
Preceding gene: 83720547
Following gene: 83718970
Centisome position: 30.65
GC content: 74.29
Gene sequence:
>2610_bases TTGACGGCGGCGGGCAAAGCGATTCCGGCCGGCCGCCGCTTCGGCCCAGTCGATCTGCTGCGCCAGGCGGGGCGGATGAC GCTGCGCGACTGGCGCGCGGGCGAGCTGACGCTCGTCGCGCTCGCGCTCGTGCTCGCCGTCGCGGCGCTCACGAGCGTCG GCTTTCTCGCCGATAGGCTGCGCCAGGGGCTCGAGCGCGACGCGCGCCGGATGCTCGGCGCGGATTTCGTCGTGCGGGCC GATCATCCGGTCGATCCGGCATTCGCGCGCGAGGCGCGATCGCTCGGCCTCGCGACCGCGACGACCGCGATCTTCCCGAG CATGGTCGGCGCGGCCGATGCGCCCGACTCATCCGGCACGCCCGCCGCCGCGTCCGGAGCGAGCGGCTCGCCGCCCGTGC GGCTCGCGGCCGTGAAGGCCGTGTCGGCGGGCTATCCGCTGCGCGGCGCGGTCGAGATCGCGCCCGGCGCGAACGCGCCC GGCCGCGCCGCCGGTTCGATCCCGGCTCCCGGCGCCGTATGGGTCGATCCGTCGCTGCTCGACGCGCTGCATCTGAAGGT CGGCGATGCGTTGCGCGTCGGCGGCCGCACGTTCGCGATCGGCGCGGCGATCACCCGCGAGCTCGACCGTGGCTTCTCGT TCGTCAATTTCTCGCCGCGCGTGATGCTGCGCGCGGACGAGCTCGAGTCGACGGGGCTCACCGGCTACGGCAGCCGCGTC ACCTATCGCCTGCTCGTCGCGGGCGACGATGCCGCCGTCGGGCGCTTCGCGCGCTACGCGCATGCGCGCGTCGATGGCGG CAAGCTGCGTGGCGTCGCGCTCGAATCGCTGCAGGAGGGACAGCCGCAGGTGCGGCAGACGCTCGACCGCGCGCGCCATT TCCTCACGCTCGTCGCGCTGCTGACGGCGCTGCTCGCGGCCGTCGCGATCGCGATGGCGGCGCAGCGCTACATGCGCCGC CATCTCGACGGCTGCGCGGCGATGCGATGCCTCGGCGCCAGCCGCCGCGCGCTGTCCGCGCTGTTCGCGATCGAATTCGC GCTGCTCGGCGTCGCGGGCGGCGCGGCGGGCGCGGCGCTCGGCTACGTCGGCCATCTCGCGCTGCTGCGCGCGCTCGGCA GCCTGATCGACGTCGTGCTGCCGCCGCCGTCCGTGTGGCCCGCGGCGATCGGCATCGCGGCTGGGCTCGTGCTGCTGCTC GGCTTCGCGCTGCCGCCGCTCGCGCCGTTGACGCGCGTGCCGCCCGCGCGCGTGCTGCGCCGCGAATGGGGCGACGCCGG CCGTGTCGCGTGGCTGGGCTACGCGGTGGGCATCGCGCTCTTCGCGGCGCTCCTGATCGCGGCGGCGGGCAACCTGACGC TCGGCGCGATCGTCGCGGGCGGCTTCGCGGGCAGCCTCGTGCTGTTCGCGCTCGTCGCGCGGCTCGCGCTGTTCGCGCTC GCGCGCGTCGTGCGCGACGGCCGCGTCGCGGCGGGGCTCGGCTGGCGCTACGCGCTCGCGTCGCTCGACCGGCGCGGCGC CGCGAGCGCGCTGCAGATCACCGCGCTCGCGATCGGCCTGATGTGCCTGCTCCTCATCGCGATCACGCGCAACGATCTCG TCGCCGGCTGGCGGCGGTCGACGCCGCCCGACGCGCCCAACCAATTCCTGATCGACATCCAGCCCGACCAGCGCGACGAC GTCGTCCGCTATCTCGCGGCGAGCGGCATCGTGAATCCGGCGCTGTCGCCGATGGTGCGCGGGCGGCTCGTCGCGGTGAA CGGCAAGCCGGTGAACCCGGACGACTACAAGCGCGACGAAGCGCGCCGCCTCGTCGACCGCGAATTCAACCTGTCTTACA CGACGCAGTTGCCCGAAGACAACCGGCTCGTCGCGGGCGACTGGTTCGGCGCATCGAGCGTGCCGCAGATCTCGATCGAG GCGGGGCTCGCGAAGACGCTCGGCGTGAAGCCGGGCGACACGCTGCGCTTCGACGTGACGGGCCTGACCGTCGACGCGCC GGTGACGAGCGTGCGCAAGCTCGACTGGGGCACGTTCCGCGTGAACTTCTTCGTGCTGATGCCGCCCGCGGCGCTGCGCG ATTTTCCGGCCACCTACATCACGAGCTTCCATCTGCCGCCCCCGCGCCAGCGCGTGCTCGACGGCCTGATCGCGCGGTAT CCGAACCTGACGGCGATCGACGTCGGGCCGATCCTCGCGCAGCTCGAGCGCGTGCTGCTGCAGGTGGTCGGCGCGGTGCA GTTCCTGTTCGGCTTCACGCTCGCGGCGGGCGTGCTCGTGCTATATACGGCGCTAGCCGGCTCGCGCGACGAGCGCGTGC GCGAGGCCGCGCTGATGCGCGCGCTCGGCGCGTCGCGCAAGCAGATCGTCGCCGTGCAGCGCGCGGAGTTCGTCGTGGTC GGCGTGCTCGCGGGCGCGATGGCGGCGGCGGGCGCGCTCGCGGTCGGCGCGGTGCTCGCGTCGCGCGTGTTCGATTTCCA GCTCGCGCCCGATCCGTGGCTCGTGCCGGCCGGCATCGCGGCGGGCGTCGCGTGCGCGGGCGCGGCGGGGTGGCTCGGCT TGCGCGGCGTGCTGCGCAGGCCGGCGCTGCAATCGCTGCGCGATGCATGA
Upstream 100 bases:
>100_bases CGTGGGCGTTGCCGCGCCTTTGGCGCGGCGTGTCGGGCGGCTTTCGCGGGATGGCGAACCACATGGTGTCGCGGCTGAAT TCGATCGGGAGCAAGCGCGA
Downstream 100 bases:
>100_bases AGCGCGCGCTCGCGGTATCTTCGGGCGATCCGCTTGTCCATTTCCTGGTTTGTTTTTCGATTCGACCGATTCCCGTATGA CCGATGTTACCGATGACGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 869; Mature: 868
Protein sequence:
>869_residues MTAAGKAIPAGRRFGPVDLLRQAGRMTLRDWRAGELTLVALALVLAVAALTSVGFLADRLRQGLERDARRMLGADFVVRA DHPVDPAFAREARSLGLATATTAIFPSMVGAADAPDSSGTPAAASGASGSPPVRLAAVKAVSAGYPLRGAVEIAPGANAP GRAAGSIPAPGAVWVDPSLLDALHLKVGDALRVGGRTFAIGAAITRELDRGFSFVNFSPRVMLRADELESTGLTGYGSRV TYRLLVAGDDAAVGRFARYAHARVDGGKLRGVALESLQEGQPQVRQTLDRARHFLTLVALLTALLAAVAIAMAAQRYMRR HLDGCAAMRCLGASRRALSALFAIEFALLGVAGGAAGAALGYVGHLALLRALGSLIDVVLPPPSVWPAAIGIAAGLVLLL GFALPPLAPLTRVPPARVLRREWGDAGRVAWLGYAVGIALFAALLIAAAGNLTLGAIVAGGFAGSLVLFALVARLALFAL ARVVRDGRVAAGLGWRYALASLDRRGAASALQITALAIGLMCLLLIAITRNDLVAGWRRSTPPDAPNQFLIDIQPDQRDD VVRYLAASGIVNPALSPMVRGRLVAVNGKPVNPDDYKRDEARRLVDREFNLSYTTQLPEDNRLVAGDWFGASSVPQISIE AGLAKTLGVKPGDTLRFDVTGLTVDAPVTSVRKLDWGTFRVNFFVLMPPAALRDFPATYITSFHLPPPRQRVLDGLIARY PNLTAIDVGPILAQLERVLLQVVGAVQFLFGFTLAAGVLVLYTALAGSRDERVREAALMRALGASRKQIVAVQRAEFVVV GVLAGAMAAAGALAVGAVLASRVFDFQLAPDPWLVPAGIAAGVACAGAAGWLGLRGVLRRPALQSLRDA
Sequences:
>Translated_869_residues MTAAGKAIPAGRRFGPVDLLRQAGRMTLRDWRAGELTLVALALVLAVAALTSVGFLADRLRQGLERDARRMLGADFVVRA DHPVDPAFAREARSLGLATATTAIFPSMVGAADAPDSSGTPAAASGASGSPPVRLAAVKAVSAGYPLRGAVEIAPGANAP GRAAGSIPAPGAVWVDPSLLDALHLKVGDALRVGGRTFAIGAAITRELDRGFSFVNFSPRVMLRADELESTGLTGYGSRV TYRLLVAGDDAAVGRFARYAHARVDGGKLRGVALESLQEGQPQVRQTLDRARHFLTLVALLTALLAAVAIAMAAQRYMRR HLDGCAAMRCLGASRRALSALFAIEFALLGVAGGAAGAALGYVGHLALLRALGSLIDVVLPPPSVWPAAIGIAAGLVLLL GFALPPLAPLTRVPPARVLRREWGDAGRVAWLGYAVGIALFAALLIAAAGNLTLGAIVAGGFAGSLVLFALVARLALFAL ARVVRDGRVAAGLGWRYALASLDRRGAASALQITALAIGLMCLLLIAITRNDLVAGWRRSTPPDAPNQFLIDIQPDQRDD VVRYLAASGIVNPALSPMVRGRLVAVNGKPVNPDDYKRDEARRLVDREFNLSYTTQLPEDNRLVAGDWFGASSVPQISIE AGLAKTLGVKPGDTLRFDVTGLTVDAPVTSVRKLDWGTFRVNFFVLMPPAALRDFPATYITSFHLPPPRQRVLDGLIARY PNLTAIDVGPILAQLERVLLQVVGAVQFLFGFTLAAGVLVLYTALAGSRDERVREAALMRALGASRKQIVAVQRAEFVVV GVLAGAMAAAGALAVGAVLASRVFDFQLAPDPWLVPAGIAAGVACAGAAGWLGLRGVLRRPALQSLRDA >Mature_868_residues TAAGKAIPAGRRFGPVDLLRQAGRMTLRDWRAGELTLVALALVLAVAALTSVGFLADRLRQGLERDARRMLGADFVVRAD HPVDPAFAREARSLGLATATTAIFPSMVGAADAPDSSGTPAAASGASGSPPVRLAAVKAVSAGYPLRGAVEIAPGANAPG RAAGSIPAPGAVWVDPSLLDALHLKVGDALRVGGRTFAIGAAITRELDRGFSFVNFSPRVMLRADELESTGLTGYGSRVT YRLLVAGDDAAVGRFARYAHARVDGGKLRGVALESLQEGQPQVRQTLDRARHFLTLVALLTALLAAVAIAMAAQRYMRRH LDGCAAMRCLGASRRALSALFAIEFALLGVAGGAAGAALGYVGHLALLRALGSLIDVVLPPPSVWPAAIGIAAGLVLLLG FALPPLAPLTRVPPARVLRREWGDAGRVAWLGYAVGIALFAALLIAAAGNLTLGAIVAGGFAGSLVLFALVARLALFALA RVVRDGRVAAGLGWRYALASLDRRGAASALQITALAIGLMCLLLIAITRNDLVAGWRRSTPPDAPNQFLIDIQPDQRDDV VRYLAASGIVNPALSPMVRGRLVAVNGKPVNPDDYKRDEARRLVDREFNLSYTTQLPEDNRLVAGDWFGASSVPQISIEA GLAKTLGVKPGDTLRFDVTGLTVDAPVTSVRKLDWGTFRVNFFVLMPPAALRDFPATYITSFHLPPPRQRVLDGLIARYP NLTAIDVGPILAQLERVLLQVVGAVQFLFGFTLAAGVLVLYTALAGSRDERVREAALMRALGASRKQIVAVQRAEFVVVG VLAGAMAAAGALAVGAVLASRVFDFQLAPDPWLVPAGIAAGVACAGAAGWLGLRGVLRRPALQSLRDA
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=842, Percent_Identity=31.7102137767221, Blast_Score=332, Evalue=7e-92,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 90908; Mature: 90777
Theoretical pI: Translated: 11.07; Mature: 11.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAAGKAIPAGRRFGPVDLLRQAGRMTLRDWRAGELTLVALALVLAVAALTSVGFLADRL CCCCCCCCCCCCCCCHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RQGLERDARRMLGADFVVRADHPVDPAFAREARSLGLATATTAIFPSMVGAADAPDSSGT HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCC PAAASGASGSPPVRLAAVKAVSAGYPLRGAVEIAPGANAPGRAAGSIPAPGAVWVDPSLL CCCCCCCCCCCCEEHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEECHHHH DALHLKVGDALRVGGRTFAIGAAITRELDRGFSFVNFSPRVMLRADELESTGLTGYGSRV HHHHHHHCCHHEECCCEEEHHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCCCCCCCE TYRLLVAGDDAAVGRFARYAHARVDGGKLRGVALESLQEGQPQVRQTLDRARHFLTLVAL EEEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH LTALLAAVAIAMAAQRYMRRHLDGCAAMRCLGASRRALSALFAIEFALLGVAGGAAGAAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH GYVGHLALLRALGSLIDVVLPPPSVWPAAIGIAAGLVLLLGFALPPLAPLTRVPPARVLR HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH REWGDAGRVAWLGYAVGIALFAALLIAAAGNLTLGAIVAGGFAGSLVLFALVARLALFAL HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHH ARVVRDGRVAAGLGWRYALASLDRRGAASALQITALAIGLMCLLLIAITRNDLVAGWRRS HHHHHCCCEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCC TPPDAPNQFLIDIQPDQRDDVVRYLAASGIVNPALSPMVRGRLVAVNGKPVNPDDYKRDE CCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHCCEEEEECCCCCCCCCCCHHH ARRLVDREFNLSYTTQLPEDNRLVAGDWFGASSVPQISIEAGLAKTLGVKPGDTLRFDVT HHHHHHHCCCCEEEECCCCCCEEEEECCCCCCCCCCEEHHHCHHHHCCCCCCCEEEEEEE GLTVDAPVTSVRKLDWGTFRVNFFVLMPPAALRDFPATYITSFHLPPPRQRVLDGLIARY EEEECCCHHHHHHCCCCEEEEEEEEEECCHHHHHCCHHHHEECCCCCCHHHHHHHHHHHC PNLTAIDVGPILAQLERVLLQVVGAVQFLFGFTLAAGVLVLYTALAGSRDERVREAALMR CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH ALGASRKQIVAVQRAEFVVVGVLAGAMAAAGALAVGAVLASRVFDFQLAPDPWLVPAGIA HHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHH AGVACAGAAGWLGLRGVLRRPALQSLRDA HHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TAAGKAIPAGRRFGPVDLLRQAGRMTLRDWRAGELTLVALALVLAVAALTSVGFLADRL CCCCCCCCCCCCCCHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RQGLERDARRMLGADFVVRADHPVDPAFAREARSLGLATATTAIFPSMVGAADAPDSSGT HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCC PAAASGASGSPPVRLAAVKAVSAGYPLRGAVEIAPGANAPGRAAGSIPAPGAVWVDPSLL CCCCCCCCCCCCEEHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEECHHHH DALHLKVGDALRVGGRTFAIGAAITRELDRGFSFVNFSPRVMLRADELESTGLTGYGSRV HHHHHHHCCHHEECCCEEEHHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCCCCCCCE TYRLLVAGDDAAVGRFARYAHARVDGGKLRGVALESLQEGQPQVRQTLDRARHFLTLVAL EEEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH LTALLAAVAIAMAAQRYMRRHLDGCAAMRCLGASRRALSALFAIEFALLGVAGGAAGAAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH GYVGHLALLRALGSLIDVVLPPPSVWPAAIGIAAGLVLLLGFALPPLAPLTRVPPARVLR HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH REWGDAGRVAWLGYAVGIALFAALLIAAAGNLTLGAIVAGGFAGSLVLFALVARLALFAL HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHH ARVVRDGRVAAGLGWRYALASLDRRGAASALQITALAIGLMCLLLIAITRNDLVAGWRRS HHHHHCCCEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCC TPPDAPNQFLIDIQPDQRDDVVRYLAASGIVNPALSPMVRGRLVAVNGKPVNPDDYKRDE CCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHCCEEEEECCCCCCCCCCCHHH ARRLVDREFNLSYTTQLPEDNRLVAGDWFGASSVPQISIEAGLAKTLGVKPGDTLRFDVT HHHHHHHCCCCEEEECCCCCCEEEEECCCCCCCCCCEEHHHCHHHHCCCCCCCEEEEEEE GLTVDAPVTSVRKLDWGTFRVNFFVLMPPAALRDFPATYITSFHLPPPRQRVLDGLIARY EEEECCCHHHHHHCCCCEEEEEEEEEECCHHHHHCCHHHHEECCCCCCHHHHHHHHHHHC PNLTAIDVGPILAQLERVLLQVVGAVQFLFGFTLAAGVLVLYTALAGSRDERVREAALMR CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH ALGASRKQIVAVQRAEFVVVGVLAGAMAAAGALAVGAVLASRVFDFQLAPDPWLVPAGIA HHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHH AGVACAGAAGWLGLRGVLRRPALQSLRDA HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]