Click here to switch to the map view.

The map label for this gene is rfaC-1 [H]

Identifier: 83720174

GI number: 83720174

Start: 1689479

End: 1690546

Strand: Direct

Name: rfaC-1 [H]

Synonym: BTH_I1490

Alternate gene names: 83720174

Gene position: 1689479-1690546 (Clockwise)

Preceding gene: 83720904

Following gene: 83719909

Centisome position: 44.35

GC content: 70.88

Gene sequence:

>1068_bases
GTGCCGGCCGCCCGGCGCGATAAAATCCGTCCTTTCGGTCTGTGCCGGCCGCCGCCGGCCATTTTTCTCAGCGTGCAAAA
AATTCTGATCGTGCGCGTGTCGTCGCTCGGCGACGTCGTGCATAACATGCCGGTGATCGCCGATATTCGCCGGCGCCATC
CCGATGCGCAGATCGACTGGCTCGTCGAGGAAGGCTTCGCCGATCTCGTGCGGCTCGTCGACGGCGTGCGCAACGTGCTG
CCGTTCTCGCTGCGGCGCTGGCGCAAGCGCCTGAGCGCATCGCAGACGTGGCGCGAGATCCGCGCATTCCGGCGGCGTCT
CGCCGAACAGCGCTACGACCTCGTGATCGACTGCCAGGGGCTCATCAAGACCGCGTGGGTCGCGAGCTGGGCGCGCGGGC
CGCTCGTCGGCCTCGGCAACCGCACCGACGGCGCCGGCTACGAATGGCCGGTGCGCTTCTTCTACGACAAGCGCGTGCCG
ATCGCGCCGCGCACGCACGTCGTCGAGCGCTCGCGGCAACTCGTCGCGGCGGCGCTGGGAGACCCCGCGCCGGCGCCCGA
CGATCCGATCGACTTCGGCCTCGACACGCACGGCGCGGCGCGCGCGCTCGCGTCGCTCGATTTGAACCTGCCGGTGCCTT
ACGTCGTGTTCGTGCATGCGACGTCGCGCGCCGACAAGCAGTGGCCCGACGACGCGTGGATCGGCCTGGGCGAGGCGCTC
GTGCGGCGCGGCGCGTCGCTCGTGCTGCCGTGGGGCAGCGACGCCGAGCGCGCGACGAGCGAGCGGCTCGCGAAGGCGTT
CGGCGCGGCGGCGATCGTGCCGCCGAAGCTGTCGCTGCCCGCGGTCGTCGGCTTGATCGACGGTGCGGCCGCGACGGTCG
GCGTCGATACCGGCCTCGTCCACATCGCGGCGGCGCTCAAGCGCCCGACCGTCGAACTGTACAATTTCGCGACAGCCTGG
CGCACGGGCGGCTACTGGTCGGCCAACGTCGTCAACCTCGGCACCGCCGGCGCGCCGCCATCCCTTTCGCAGACGAAGGA
CGCCCTCGCGTCGTTCGGCCTCTTGTAA

Upstream 100 bases:

>100_bases
GCGACGCGTCGCGCGGCGGGGACGGTTCGTCCGACCTTGCGCTGACGCAAGCCTCGTCGAAAAAGCGGCGACGCATTCGT
GCGTTCGCCGCTTTTTGTCT

Downstream 100 bases:

>100_bases
TCCCGACAGGCGATCATGAGCGAATCCCAGATCATCGAAATTGCGTCCGCCGACTGGAGCGGCCAACAACTGTCCGTGCC
GCGCGAGCAACTGCTCGCCG

Product: lipopolysaccharide heptosyltransferase I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 354

Protein sequence:

>355_residues
MPAARRDKIRPFGLCRPPPAIFLSVQKILIVRVSSLGDVVHNMPVIADIRRRHPDAQIDWLVEEGFADLVRLVDGVRNVL
PFSLRRWRKRLSASQTWREIRAFRRRLAEQRYDLVIDCQGLIKTAWVASWARGPLVGLGNRTDGAGYEWPVRFFYDKRVP
IAPRTHVVERSRQLVAAALGDPAPAPDDPIDFGLDTHGAARALASLDLNLPVPYVVFVHATSRADKQWPDDAWIGLGEAL
VRRGASLVLPWGSDAERATSERLAKAFGAAAIVPPKLSLPAVVGLIDGAAATVGVDTGLVHIAAALKRPTVELYNFATAW
RTGGYWSANVVNLGTAGAPPSLSQTKDALASFGLL

Sequences:

>Translated_355_residues
MPAARRDKIRPFGLCRPPPAIFLSVQKILIVRVSSLGDVVHNMPVIADIRRRHPDAQIDWLVEEGFADLVRLVDGVRNVL
PFSLRRWRKRLSASQTWREIRAFRRRLAEQRYDLVIDCQGLIKTAWVASWARGPLVGLGNRTDGAGYEWPVRFFYDKRVP
IAPRTHVVERSRQLVAAALGDPAPAPDDPIDFGLDTHGAARALASLDLNLPVPYVVFVHATSRADKQWPDDAWIGLGEAL
VRRGASLVLPWGSDAERATSERLAKAFGAAAIVPPKLSLPAVVGLIDGAAATVGVDTGLVHIAAALKRPTVELYNFATAW
RTGGYWSANVVNLGTAGAPPSLSQTKDALASFGLL
>Mature_354_residues
PAARRDKIRPFGLCRPPPAIFLSVQKILIVRVSSLGDVVHNMPVIADIRRRHPDAQIDWLVEEGFADLVRLVDGVRNVLP
FSLRRWRKRLSASQTWREIRAFRRRLAEQRYDLVIDCQGLIKTAWVASWARGPLVGLGNRTDGAGYEWPVRFFYDKRVPI
APRTHVVERSRQLVAAALGDPAPAPDDPIDFGLDTHGAARALASLDLNLPVPYVVFVHATSRADKQWPDDAWIGLGEALV
RRGASLVLPWGSDAERATSERLAKAFGAAAIVPPKLSLPAVVGLIDGAAATVGVDTGLVHIAAALKRPTVELYNFATAWR
TGGYWSANVVNLGTAGAPPSLSQTKDALASFGLL

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=330, Percent_Identity=36.3636363636364, Blast_Score=191, Evalue=5e-50,
Organism=Escherichia coli, GI1790062, Length=318, Percent_Identity=26.7295597484277, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 38741; Mature: 38610

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAARRDKIRPFGLCRPPPAIFLSVQKILIVRVSSLGDVVHNMPVIADIRRRHPDAQIDW
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHH
LVEEGFADLVRLVDGVRNVLPFSLRRWRKRLSASQTWREIRAFRRRLAEQRYDLVIDCQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHH
LIKTAWVASWARGPLVGLGNRTDGAGYEWPVRFFYDKRVPIAPRTHVVERSRQLVAAALG
HHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHC
DPAPAPDDPIDFGLDTHGAARALASLDLNLPVPYVVFVHATSRADKQWPDDAWIGLGEAL
CCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH
VRRGASLVLPWGSDAERATSERLAKAFGAAAIVPPKLSLPAVVGLIDGAAATVGVDTGLV
HHCCCCEEEECCCCHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHCCCHHEEECHHHHH
HIAAALKRPTVELYNFATAWRTGGYWSANVVNLGTAGAPPSLSQTKDALASFGLL
HHHHHHCCCCHHHHHHHHHHCCCCEEECCEEECCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
PAARRDKIRPFGLCRPPPAIFLSVQKILIVRVSSLGDVVHNMPVIADIRRRHPDAQIDW
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHH
LVEEGFADLVRLVDGVRNVLPFSLRRWRKRLSASQTWREIRAFRRRLAEQRYDLVIDCQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHH
LIKTAWVASWARGPLVGLGNRTDGAGYEWPVRFFYDKRVPIAPRTHVVERSRQLVAAALG
HHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHC
DPAPAPDDPIDFGLDTHGAARALASLDLNLPVPYVVFVHATSRADKQWPDDAWIGLGEAL
CCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH
VRRGASLVLPWGSDAERATSERLAKAFGAAAIVPPKLSLPAVVGLIDGAAATVGVDTGLV
HHCCCCEEEECCCCHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHCCCHHEEECHHHHH
HIAAALKRPTVELYNFATAWRTGGYWSANVVNLGTAGAPPSLSQTKDALASFGLL
HHHHHHCCCCHHHHHHHHHHCCCCEEECCEEECCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferases; Glycosyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8478319; 8041620; 9278503; 1624462 [H]