| Definition | Burkholderia thailandensis E264 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_007651 |
| Length | 3,809,201 |
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The map label for this gene is secD [H]
Identifier: 83719918
GI number: 83719918
Start: 1424585
End: 1426606
Strand: Reverse
Name: secD [H]
Synonym: BTH_I1276
Alternate gene names: 83719918
Gene position: 1426606-1424585 (Counterclockwise)
Preceding gene: 83719987
Following gene: 83719393
Centisome position: 37.45
GC content: 68.5
Gene sequence:
>2022_bases ATGAATCGTTATCCAATCTGGAAATATGTGGTGATGGTCGTGGCGCTCGCCATCGGCTTTCTGTACACATTGCCCAACTT CTTCGGCGAAGCGCCGGCGGTGCAGGTATCGAGCGGCAAGGCCACGGTCAAGCTCGGCGCCGATACGCTCGCGCAGGTCG AGGCAGCGCTGAAGGCCAACCAGGTCGCGGCCGACGACGTCACGTTCGACAACTCCAGCGCCAACGCGACGATCCGCGTG CGCCTGAAGGACACCGACACGCAGTTGCGCGTGAAGGACATGCTGCAGAAGACGCTGAACGCCGATCCGAACGATCCGCA GTACATCGTCGCGCTGAACCTGCAGAGCGCGTCGCCGCGCTGGCTGACCGCGCTGCACGCGCTGCCGATGTATCTCGGCC TCGATCTGCGCGGCGGCGTCCACTTCCTGCTGCAAGTCGACATGACGGGCGCGCTGACGAAGAAGCTCGATTCCGACGCG TCCGACGCCCGCACGCAGCTGCGCGACAAGGGCATCCGCGACGGCGGCGTCGCCCGCGTCGACCAGACTGTCGTCGCGAA CTTCGCCGACCAGGACACCGCCGAGCAGGCGCGCAAGCTGCTCGTCTCGTCCGTCTCCGAACTCCAGTGGGCGACGCAGC CGGGCGGCGGCGGCTATCAGGTCGTCGGCACGTTCACGCCGGCCGTCCAGAAGGCCGTCGAGGAAGCGGCGCTCAAGCAG AACCTGACGACGCTGCACAACCGCGTCAACGAGCTCGGCGTGTCCGAGCCGATCCTCCAGCAGCAGGGCAACGACCGCAT CGTCGTCGAGCTGCCGGGCGTGCAGGACACCGCGAAGGCGAAGGACATCATCGGCCGCACGGCGACGCTCGAGGCGCGCC TGGCCGATCCGCTCAACACGCATCCGAATCCCAACGATCCGGTGCCGCCGGGCGAGGAACTGTTCACGCAGGGCAACCAG GTGCCGGTGCTGCTCAAGAAGCAGGTGATCTTCACGGGCGACCGCATCATCGACGCATCCGCGGGCTTCGACGAGCATCA GCGTCCGTCCGTCAACATCCGCCTCGATTCGGCGGGCGGCCGCGCGGTGCGCGCGGTGTCGCGCGAGAACATCGGCAAGC CGATGGCGATGGTGCTGTTCGAGAAGGGCAAGGGCGAAGTGCTGACCGTCGCGACGATCCAGTCGGAGCTCGGCGACCGC TTCCAGATCACGGGCCAGCCGACTCCGCAGGCCGCCGCCGATCTCGCGCTGCTGCTGCGCGCGGGCTCGCTCGCCGCGCC GATGGACATCATCGAGGAACGCACGATCGGCCCGAGCCTCGGCGCGGACAACATCCGGATGGGCTTCCATTCGGTGATCT GGGGCTTCGTCGCGATCGCCGTGTTCATGATCGCGTACTACATGCTGTTCGGCGTCGTGTCGGTGCTCGGCCTGTCGGTG AACCTGCTGCTGCTCGTCGCGGTGCTGTCGCTGATGCAGGCGACGCTCACGCTGCCCGGCATCGCGGCCATCGCGCTCGC GCTCGGCATGGCGATCGACTCGAATGTGCTGATCAACGAGCGCATCCGCGAAGAACTGCGCCGCGGCGCATCGCCGCAGA TCGCGATCCAGGAAGGCTATGCGCATGCATGGGCGACGATTCTCGATTCGAACGTGACGACGCTGATCGCGGGCCTCGCG CTGCTCGCGTTCGGCTCGGGCCCGGTGCGCGCGTTCGCGATCGTGCACTGTCTCGGCATCCTGACGTCGATGTTCTCCGC AGTGTTCTTCTCGCGCGGCCTCGTGAACCTCTGGTACGGCGGGCGCAAGAAGCTGCAGTCGCTCGCGATCGGCCAGGTGT GGCGCCCCGCCGAGGCCGGCGCCGCGCCGCAGCTCGGCCAGGACGCGCGCGCGAACGCGCCGCAGCCCGGCGCACGCGTG GCCGCGCCGAAGCAGCCGGCGGGCGCGCCGCGCACCGGCAAGCCGGTCGCGCGCCGCCGCTCGGGCCCGGGCGTGCCGCC CAAGCAGGGCTCGTCCAACTAA
Upstream 100 bases:
>100_bases CCCCGCGTCCGGCCGCCCGGCGCCCGCGCAGCGAAGCGCGCGGCCGAGGCCGGCGCCGGACGCGGCGCCATTCCAGCCAA CCATCCCGTTCGGCCCCCTC
Downstream 100 bases:
>100_bases GCGCCGGAGACGCACATGGAATTTTTCCGCATCCGTAAAGACATTCCGTTCATGCGGCACGCGTTGGTCTTCAACGTGGT CTCGCTCGTGACGTTCCTCG
Product: preprotein translocase subunit SecD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 673; Mature: 673
Protein sequence:
>673_residues MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKANQVAADDVTFDNSSANATIRV RLKDTDTQLRVKDMLQKTLNADPNDPQYIVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA SDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLVSSVSELQWATQPGGGGYQVVGTFTPAVQKAVEEAALKQ NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQ VPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDR FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFMIAYYMLFGVVSVLGLSV NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLA LLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLQSLAIGQVWRPAEAGAAPQLGQDARANAPQPGARV AAPKQPAGAPRTGKPVARRRSGPGVPPKQGSSN
Sequences:
>Translated_673_residues MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKANQVAADDVTFDNSSANATIRV RLKDTDTQLRVKDMLQKTLNADPNDPQYIVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA SDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLVSSVSELQWATQPGGGGYQVVGTFTPAVQKAVEEAALKQ NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQ VPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDR FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFMIAYYMLFGVVSVLGLSV NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLA LLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLQSLAIGQVWRPAEAGAAPQLGQDARANAPQPGARV AAPKQPAGAPRTGKPVARRRSGPGVPPKQGSSN >Mature_673_residues MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKANQVAADDVTFDNSSANATIRV RLKDTDTQLRVKDMLQKTLNADPNDPQYIVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA SDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLVSSVSELQWATQPGGGGYQVVGTFTPAVQKAVEEAALKQ NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQ VPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDR FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFMIAYYMLFGVVSVLGLSV NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLA LLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLQSLAIGQVWRPAEAGAAPQLGQDARANAPQPGARV AAPKQPAGAPRTGKPVARRRSGPGVPPKQGSSN
Specific function: Involved in protein export [H]
COG id: COG0342
COG function: function code U; Preprotein translocase subunit SecD
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secD/secF family. SecD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786609, Length=628, Percent_Identity=44.4267515923567, Blast_Score=506, Evalue=1e-144,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005791 - InterPro: IPR022813 - InterPro: IPR022646 - InterPro: IPR022645 [H]
Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]
EC number: NA
Molecular weight: Translated: 71763; Mature: 71763
Theoretical pI: Translated: 9.50; Mature: 9.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKAN CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECHHHHHHHHHHHHHC QVAADDVTFDNSSANATIRVRLKDTDTQLRVKDMLQKTLNADPNDPQYIVALNLQSASPR CCCCCCCEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCH WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRDGGVARV HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHH DQTVVANFADQDTAEQARKLLVSSVSELQWATQPGGGGYQVVGTFTPAVQKAVEEAALKQ HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHH NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLNT HHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCEEHHHHCCCCCC HPNPNDPVPPGEELFTQGNQVPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGG CCCCCCCCCCCHHHHHCCCCCEEEEECEEEEECCEEEECCCCCCCCCCCCEEEEEECCCC RAVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDRFQITGQPTPQAAADLALLLR HHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEHHHCCCEEEECCCCCCHHHHHHHHHHH AGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFMIAYYMLFGVVSVLGLSV CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERIREELRRGASPQIAIQEGY HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCEEEECCH AHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYG HHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC GRKKLQSLAIGQVWRPAEAGAAPQLGQDARANAPQPGARVAAPKQPAGAPRTGKPVARRR CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC SGPGVPPKQGSSN CCCCCCCCCCCCC >Mature Secondary Structure MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKAN CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECHHHHHHHHHHHHHC QVAADDVTFDNSSANATIRVRLKDTDTQLRVKDMLQKTLNADPNDPQYIVALNLQSASPR CCCCCCCEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCH WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRDGGVARV HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHH DQTVVANFADQDTAEQARKLLVSSVSELQWATQPGGGGYQVVGTFTPAVQKAVEEAALKQ HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHH NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLNT HHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCEEHHHHCCCCCC HPNPNDPVPPGEELFTQGNQVPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGG CCCCCCCCCCCHHHHHCCCCCEEEEECEEEEECCEEEECCCCCCCCCCCCEEEEEECCCC RAVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDRFQITGQPTPQAAADLALLLR HHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEHHHCCCEEEECCCCCCHHHHHHHHHHH AGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFMIAYYMLFGVVSVLGLSV CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERIREELRRGASPQIAIQEGY HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCEEEECCH AHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYG HHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC GRKKLQSLAIGQVWRPAEAGAAPQLGQDARANAPQPGARVAAPKQPAGAPRTGKPVARRR CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC SGPGVPPKQGSSN CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]