Click here to switch to the map view.

The map label for this gene is ytfH [H]

Identifier: 83719430

GI number: 83719430

Start: 1613869

End: 1614333

Strand: Direct

Name: ytfH [H]

Synonym: BTH_I1430

Alternate gene names: 83719430

Gene position: 1613869-1614333 (Clockwise)

Preceding gene: 83719531

Following gene: 83720981

Centisome position: 42.37

GC content: 63.87

Gene sequence:

>465_bases
GTGGAAACTATAGACTGGATGGCAACGATGCGAAAGAACGCACCCCATGGTGAGCAGATTACCGACAGGAAACCATCGCT
TCTCGACGCGCCGCTCAAGGGCAACGTGTACGCGTCGGAATGCCCGACGCGGCTCGTGCTCGATCGCATCGCGGATAAAT
GGACCGTCCTGATCCTTGCGCTGCTGTCGCACGCGCCGCTGCGCTTCAACGCGCTGCTGCGGCATATCGAAGGTCTGTCG
CAGAAGGTGCTGTCGCAAACGCTCAAGCGGCTCGAGCGCGACGGGCTTGTCGCACGCACCGTCTATGCGACGGTGCCGGT
GTCGGTCGAATATGCGTTGACGCCGCTCGGCCACACGCTCGCGCGCTCGATCTCGCCGATCATCGTGTGGGCGGAAACGC
ACATCGACGCCGTGCTCGATGCACGCACGGCCTACGACGCCCGGCAGGCTTGCGTGGGCGCCTGA

Upstream 100 bases:

>100_bases
GTCGCCGTGAAAGCCTTGCCGCATGTGGCGATACGCGGTGCGACATGGAACCGGACCGTCGAGCAAACGGTGCTAGTATC
TACGGTGCAGGTAGTTACCG

Downstream 100 bases:

>100_bases
GTGATCAGCAGCGTTCGGCGCATCGGCATCGACGTCGCGGAAAATCGAGAAAATAAATGCCGCGACGATGTGATTTTTTA
TTCCCACCGGACGCTTTTCA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
METIDWMATMRKNAPHGEQITDRKPSLLDAPLKGNVYASECPTRLVLDRIADKWTVLILALLSHAPLRFNALLRHIEGLS
QKVLSQTLKRLERDGLVARTVYATVPVSVEYALTPLGHTLARSISPIIVWAETHIDAVLDARTAYDARQACVGA

Sequences:

>Translated_154_residues
METIDWMATMRKNAPHGEQITDRKPSLLDAPLKGNVYASECPTRLVLDRIADKWTVLILALLSHAPLRFNALLRHIEGLS
QKVLSQTLKRLERDGLVARTVYATVPVSVEYALTPLGHTLARSISPIIVWAETHIDAVLDARTAYDARQACVGA
>Mature_154_residues
METIDWMATMRKNAPHGEQITDRKPSLLDAPLKGNVYASECPTRLVLDRIADKWTVLILALLSHAPLRFNALLRHIEGLS
QKVLSQTLKRLERDGLVARTVYATVPVSVEYALTPLGHTLARSISPIIVWAETHIDAVLDARTAYDARQACVGA

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=110, Percent_Identity=41.8181818181818, Blast_Score=99, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 17064; Mature: 17064

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METIDWMATMRKNAPHGEQITDRKPSLLDAPLKGNVYASECPTRLVLDRIADKWTVLILA
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCHHHHHHHHHHHHHHHHHH
LLSHAPLRFNALLRHIEGLSQKVLSQTLKRLERDGLVARTVYATVPVSVEYALTPLGHTL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEHHCHHHHHH
ARSISPIIVWAETHIDAVLDARTAYDARQACVGA
HHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
METIDWMATMRKNAPHGEQITDRKPSLLDAPLKGNVYASECPTRLVLDRIADKWTVLILA
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCHHHHHHHHHHHHHHHHHH
LLSHAPLRFNALLRHIEGLSQKVLSQTLKRLERDGLVARTVYATVPVSVEYALTPLGHTL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEHHCHHHHHH
ARSISPIIVWAETHIDAVLDARTAYDARQACVGA
HHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]