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The map label for this gene is algU [H]

Identifier: 83718976

GI number: 83718976

Start: 1931511

End: 1932110

Strand: Direct

Name: algU [H]

Synonym: BTH_I1723

Alternate gene names: 83718976

Gene position: 1931511-1932110 (Clockwise)

Preceding gene: 83719662

Following gene: 83720602

Centisome position: 50.71

GC content: 62.0

Gene sequence:

>600_bases
GTGAGTGAAAAAGAAATCGATCAGGCGCTGGTCGAACGCGTACAGAATGGCGACAAGGCGGCGTTCGAACTCCTGGTCTC
CAAATACCACCGCAAGATCATCCGGCTGATCTCGCGCCTCGTGCGGGATCCCGCGGAGGTCGAGGACGTGGCCCAGGACG
CGTTCATCAAGGCGTATCGCGCGTTGCCGCAGTTTCGCGGCGAGTCGGCGTTCTACACGTGGTTGTACCGGATTGCCGTC
AATACCGCGAAGAACTACCTTGCGACCCAGGGACGCCGGGCGCCCACGTCCACCGACGCGGACGCCGAAGAGGCTGAAAC
TTTCTCCGACGCCGACCAACTAAGGGATATCAACACGCCTGAGTCGATGTTGATGAGCAAGCAAATCGCCCAGACGGTCA
ACGCCGCGATGGCGTTGCTGCCGGAAGAGCTGCGAACGGCCATCACGCTGCGCGAGATCGAAGGTCTGAGCTACGAAGAG
ATCGCGGAGATGATGGGATGCCCGATCGGCACCGTTCGCTCGCGGATCTTCCGCGCCCGCGAGGCGATCGCGGCAAAATT
GCGGCCGCTGCTCGATACGCCGGAAGGCAGGCGCTGGTAA

Upstream 100 bases:

>100_bases
TGCGCGGCCGGCCGTTTCCGGTCGAAATCGCCCAGAGCGGCTCGAGCGGGAACGTTACAATAGCGCTCCGCGTTGCTTCC
CTCGTTTACGGATTTGTCAG

Downstream 100 bases:

>100_bases
GCGCCTGCGGCGAATCGAAGCGGTTTGGGGTCTAGTTACGGAGTCGTGTGTCACGACGGGGTGTGTGCAAGATGGGGAGC
ATCATGGGGTCGGTCTCTAT

Product: RNA polymerase sigma factor RpoE

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MSEKEIDQALVERVQNGDKAAFELLVSKYHRKIIRLISRLVRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAV
NTAKNYLATQGRRAPTSTDADAEEAETFSDADQLRDINTPESMLMSKQIAQTVNAAMALLPEELRTAITLREIEGLSYEE
IAEMMGCPIGTVRSRIFRAREAIAAKLRPLLDTPEGRRW

Sequences:

>Translated_199_residues
MSEKEIDQALVERVQNGDKAAFELLVSKYHRKIIRLISRLVRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAV
NTAKNYLATQGRRAPTSTDADAEEAETFSDADQLRDINTPESMLMSKQIAQTVNAAMALLPEELRTAITLREIEGLSYEE
IAEMMGCPIGTVRSRIFRAREAIAAKLRPLLDTPEGRRW
>Mature_198_residues
SEKEIDQALVERVQNGDKAAFELLVSKYHRKIIRLISRLVRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVN
TAKNYLATQGRRAPTSTDADAEEAETFSDADQLRDINTPESMLMSKQIAQTVNAAMALLPEELRTAITLREIEGLSYEEI
AEMMGCPIGTVRSRIFRAREAIAAKLRPLLDTPEGRRW

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=191, Percent_Identity=61.7801047120419, Blast_Score=236, Evalue=6e-64,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22566; Mature: 22435

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKEIDQALVERVQNGDKAAFELLVSKYHRKIIRLISRLVRDPAEVEDVAQDAFIKAYR
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
ALPQFRGESAFYTWLYRIAVNTAKNYLATQGRRAPTSTDADAEEAETFSDADQLRDINTP
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCH
ESMLMSKQIAQTVNAAMALLPEELRTAITLREIEGLSYEEIAEMMGCPIGTVRSRIFRAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
EAIAAKLRPLLDTPEGRRW
HHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SEKEIDQALVERVQNGDKAAFELLVSKYHRKIIRLISRLVRDPAEVEDVAQDAFIKAYR
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
ALPQFRGESAFYTWLYRIAVNTAKNYLATQGRRAPTSTDADAEEAETFSDADQLRDINTP
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCH
ESMLMSKQIAQTVNAAMALLPEELRTAITLREIEGLSYEEIAEMMGCPIGTVRSRIFRAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
EAIAAKLRPLLDTPEGRRW
HHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]