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The map label for this gene is yncD [C]

Identifier: 83718695

GI number: 83718695

Start: 1796067

End: 1798403

Strand: Direct

Name: yncD [C]

Synonym: BTH_I1598

Alternate gene names: 83718695

Gene position: 1796067-1798403 (Clockwise)

Preceding gene: 83719552

Following gene: 83721039

Centisome position: 47.15

GC content: 67.65

Gene sequence:

>2337_bases
ATGTCCCATGAACTTGCCGCGCACGTCGCGCGCACGCGGCTCGCGGCCGCCTGCGTCGCGGCGTTCGCCTGGCCCGCCGC
GCACGCCGTCACGACGGGCGCCGCCGTCCCTGCCGATTCAACGTCCGCCGCCGCTGCCGAGACGACCGCATCCGGGAAAA
CCCTGGATATCGTCAGGGTGACCGCGCAGCGCCCCGCATTCGCGTCCGACACGCCCGGCGTCGTCGAGGCGCTCACGCGC
GAGCAGATCGATTCGCACGTCAACGTGACGACCGAAGACGCGCTCAAGTACGCGCCGAACCTGATGGTGCGCCGGCGCTA
TATCGGCGATCGCAACTCCGTGTTCGCCGGCCGCGATTTCAACGAGTTGCAGAGCGCGCGCGGACTCGTTTACGCGGACG
GCATCCTCCTGTCGAATCTGCTCGGCTCCAGTTACTCGTATCCGCCGCGTTGGTCGCTGATCCAGCCCGACGACATCGCG
CGCGTCGACGTGCTGTACGGCCCGTTCTCCGCGCTCTACCCGGGCAATGCGATCGGCTCGACCGTGCAGATCACGACGCG
CAAGCCGGATCGGCTCGAGGCGTCGGTGTCGACGCAGTTCTTCACGCAGCGCTATCGCGACGGCTACGGCTTTGCCGACA
GCTTCGGCGGCAATCACCAGACCGCGCGCGTCGCCGACCGCGTCGGGCGCTTCTGGTATGCGCTGTCGCTCGACCGGCTC
GAGAACGACAGCCAGCCGATGCAATACGCGAGCCCGAATGGCACGTTCGATCCGCGGCTCGGCGCGAGCGTGCCGGTGAC
GGGCGCCGTTTCCGACATCGGCCCGAACGGCCGGCCTCGGACGATCGTCGGCGCGCAGACGATCGAGCGCACCGAGCAGC
TCAACGAGACGCTGCGCTTCGGCTATGCGTTCACCGACCACGTCGATGCGACGGTTACGCTCGGCCACTGGGAGAATCAC
TACCGGCAGCACGGCGACACGTTCCTGCGCGACGCGGCGGGCAACCCGGTATACGGCGGCAACGTGTCGTTCGGCGGGCG
CAGCTACACGGTGTCGCCGACCGCGTTCGCGCCGCAGACCGGCGACCAGGAGAACTGGCTGTACGGGCTCGGGCTCGACG
CGCGTCTCGCATCAGGCTGGAAGCTGTCGGCGACCGCGTCCGCGTACGAGGTGTCGCGCGACGTGCTGCGCAGCGCGTCC
GGCGCGCCGACCGGCGCGTGGGACGGCGGCCCGGGCACGGTATTCCATGGCGACGGCACCGGCTGGCGCACCGTCGATTT
GCGAGCGGAGTCGCCCGACGTGCGCGGGCACCGCTTCTCGTTCGGCTATCACTTCGACACCTATTTCCTGCGCAACGCGA
CCTACAACACGGCGGACTGGCAAAACGCCGTGCCGACGACGCTTGCGAACCGTTATCGCGGCAACACGCGCACGCAGGCG
CTGTACGCGCAAGACGCGTGGCGTTTCGCGCCCGGCTGGCTCGCGACGCTCGGCCTGCGCTACGAACGATGGGATGCATA
CGGCGGCCAGCTCGGCAACGCGAACGCGACGCTCGGCTACGCCGGCCGTGGCGCGACCGCGCTGTCGCCGAAGCTCGCGC
TCGAATGGCAGCCAACGGACGCATGGCGCCTGCGGCTGTCGTTCGCGACGGGCACGCGCTTTCCGACCGTGGCCGAACTG
TTCCAGGGCACGATCTCGAACAACGCGATCGTCAACAACAACCCGAACCTGCAACCGGAAAAGGCGATCGACTGGGACTT
CACGGCCGAGCGCGACGTCGGCTTCGGCGTCGTGCGCACGAGCGTGTTCCAGAGCGATCTGCGCAATTCGATCTACAGCC
AGACGACGGTCGCGGGCGCTTCGACGTACACGAACATCTCGAACGTCGACCGCGTGCGGGTGCGCGGCGTCGAACTCGCG
TTTTCAGGGCAGGACGTCGCGATCAAGGGGCTCGACGTTGACGCGAACGTGTCCGCGACGAATGCGCAGACGCTCGCCGA
TGCGGCGAATCCGAACTACGTCGGCGCGCGTTGGCCGCGGATTCCACGGATGCGCGCGAACTTGCTCGCGTCGTACCGCT
TCGGCGAGCACTGGATGACGAGCGTCGGCGTGCGCTATTCGGGGCGGCAGTACAACGCGCTCGACAACAGCGACGTGAAC
CCGAACGTGTACGGCGGCACCAGTTCGTTTGCGGTCGTCGACCTCAAGGCGCGCTACCGGTTCGATCGGCACTGGCTCGC
GTCGTTCGGCATCGACAACGTGACCGATCGCCGCTACTACGTGTTTCACCCTTATCCAGGCCGCACTTTTTATGGAGAGT
TGAAATGGTCGCTGTGA

Upstream 100 bases:

>100_bases
GCGATGTCCGGCGTCGCGCCCGCCCTTCCGCGGGGACGGGCGCGGCGGGCGTTCGCCCGCGCGGCGATTCGCCGACCTCG
TTTTCAGGATCCGCTTTTCC

Downstream 100 bases:

>100_bases
AGCATCGATTGGCGGGCGTTGCGCTCGTCGCGTTCGCGTGCGGCGCGCTCGCGAACGACGCGCGGCCGGCCGCTGGCGCA
TCGAACGCGCACGCGGCGCA

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Protein; NB-Dependent Siderophore Receptor; Outer Membrane Receptor; Nb-Dependent Receptor; NB Dependent Receptor; NB-Dependent Receptor Plug; Outer Membrane Receptor Protein; Vitamin; Exogenous Ferric Siderophore nB-Dependent Receptor; Ferrisiderophore Receptor Protein; NB-Dependent Receptor Domain Protein; Fe Transport Outer Membrane Receptor Protein

Number of amino acids: Translated: 778; Mature: 777

Protein sequence:

>778_residues
MSHELAAHVARTRLAAACVAAFAWPAAHAVTTGAAVPADSTSAAAAETTASGKTLDIVRVTAQRPAFASDTPGVVEALTR
EQIDSHVNVTTEDALKYAPNLMVRRRYIGDRNSVFAGRDFNELQSARGLVYADGILLSNLLGSSYSYPPRWSLIQPDDIA
RVDVLYGPFSALYPGNAIGSTVQITTRKPDRLEASVSTQFFTQRYRDGYGFADSFGGNHQTARVADRVGRFWYALSLDRL
ENDSQPMQYASPNGTFDPRLGASVPVTGAVSDIGPNGRPRTIVGAQTIERTEQLNETLRFGYAFTDHVDATVTLGHWENH
YRQHGDTFLRDAAGNPVYGGNVSFGGRSYTVSPTAFAPQTGDQENWLYGLGLDARLASGWKLSATASAYEVSRDVLRSAS
GAPTGAWDGGPGTVFHGDGTGWRTVDLRAESPDVRGHRFSFGYHFDTYFLRNATYNTADWQNAVPTTLANRYRGNTRTQA
LYAQDAWRFAPGWLATLGLRYERWDAYGGQLGNANATLGYAGRGATALSPKLALEWQPTDAWRLRLSFATGTRFPTVAEL
FQGTISNNAIVNNNPNLQPEKAIDWDFTAERDVGFGVVRTSVFQSDLRNSIYSQTTVAGASTYTNISNVDRVRVRGVELA
FSGQDVAIKGLDVDANVSATNAQTLADAANPNYVGARWPRIPRMRANLLASYRFGEHWMTSVGVRYSGRQYNALDNSDVN
PNVYGGTSSFAVVDLKARYRFDRHWLASFGIDNVTDRRYYVFHPYPGRTFYGELKWSL

Sequences:

>Translated_778_residues
MSHELAAHVARTRLAAACVAAFAWPAAHAVTTGAAVPADSTSAAAAETTASGKTLDIVRVTAQRPAFASDTPGVVEALTR
EQIDSHVNVTTEDALKYAPNLMVRRRYIGDRNSVFAGRDFNELQSARGLVYADGILLSNLLGSSYSYPPRWSLIQPDDIA
RVDVLYGPFSALYPGNAIGSTVQITTRKPDRLEASVSTQFFTQRYRDGYGFADSFGGNHQTARVADRVGRFWYALSLDRL
ENDSQPMQYASPNGTFDPRLGASVPVTGAVSDIGPNGRPRTIVGAQTIERTEQLNETLRFGYAFTDHVDATVTLGHWENH
YRQHGDTFLRDAAGNPVYGGNVSFGGRSYTVSPTAFAPQTGDQENWLYGLGLDARLASGWKLSATASAYEVSRDVLRSAS
GAPTGAWDGGPGTVFHGDGTGWRTVDLRAESPDVRGHRFSFGYHFDTYFLRNATYNTADWQNAVPTTLANRYRGNTRTQA
LYAQDAWRFAPGWLATLGLRYERWDAYGGQLGNANATLGYAGRGATALSPKLALEWQPTDAWRLRLSFATGTRFPTVAEL
FQGTISNNAIVNNNPNLQPEKAIDWDFTAERDVGFGVVRTSVFQSDLRNSIYSQTTVAGASTYTNISNVDRVRVRGVELA
FSGQDVAIKGLDVDANVSATNAQTLADAANPNYVGARWPRIPRMRANLLASYRFGEHWMTSVGVRYSGRQYNALDNSDVN
PNVYGGTSSFAVVDLKARYRFDRHWLASFGIDNVTDRRYYVFHPYPGRTFYGELKWSL
>Mature_777_residues
SHELAAHVARTRLAAACVAAFAWPAAHAVTTGAAVPADSTSAAAAETTASGKTLDIVRVTAQRPAFASDTPGVVEALTRE
QIDSHVNVTTEDALKYAPNLMVRRRYIGDRNSVFAGRDFNELQSARGLVYADGILLSNLLGSSYSYPPRWSLIQPDDIAR
VDVLYGPFSALYPGNAIGSTVQITTRKPDRLEASVSTQFFTQRYRDGYGFADSFGGNHQTARVADRVGRFWYALSLDRLE
NDSQPMQYASPNGTFDPRLGASVPVTGAVSDIGPNGRPRTIVGAQTIERTEQLNETLRFGYAFTDHVDATVTLGHWENHY
RQHGDTFLRDAAGNPVYGGNVSFGGRSYTVSPTAFAPQTGDQENWLYGLGLDARLASGWKLSATASAYEVSRDVLRSASG
APTGAWDGGPGTVFHGDGTGWRTVDLRAESPDVRGHRFSFGYHFDTYFLRNATYNTADWQNAVPTTLANRYRGNTRTQAL
YAQDAWRFAPGWLATLGLRYERWDAYGGQLGNANATLGYAGRGATALSPKLALEWQPTDAWRLRLSFATGTRFPTVAELF
QGTISNNAIVNNNPNLQPEKAIDWDFTAERDVGFGVVRTSVFQSDLRNSIYSQTTVAGASTYTNISNVDRVRVRGVELAF
SGQDVAIKGLDVDANVSATNAQTLADAANPNYVGARWPRIPRMRANLLASYRFGEHWMTSVGVRYSGRQYNALDNSDVNP
NVYGGTSSFAVVDLKARYRFDRHWLASFGIDNVTDRRYYVFHPYPGRTFYGELKWSL

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 85363; Mature: 85232

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHELAAHVARTRLAAACVAAFAWPAAHAVTTGAAVPADSTSAAAAETTASGKTLDIVRV
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCHHHCCCCCCEEEEEEE
TAQRPAFASDTPGVVEALTREQIDSHVNVTTEDALKYAPNLMVRRRYIGDRNSVFAGRDF
ECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHCCCCCCEECCCCH
NELQSARGLVYADGILLSNLLGSSYSYPPRWSLIQPDDIARVDVLYGPFSALYPGNAIGS
HHHHHHCCEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCHHHCCCCCCCCC
TVQITTRKPDRLEASVSTQFFTQRYRDGYGFADSFGGNHQTARVADRVGRFWYALSLDRL
EEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHEEEEEEHHHH
ENDSQPMQYASPNGTFDPRLGASVPVTGAVSDIGPNGRPRTIVGAQTIERTEQLNETLRF
CCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEECHHHHHHHHHHHHHHHH
GYAFTDHVDATVTLGHWENHYRQHGDTFLRDAAGNPVYGGNVSFGGRSYTVSPTAFAPQT
CEEEECCCCEEEEECCHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCC
GDQENWLYGLGLDARLASGWKLSATASAYEVSRDVLRSASGAPTGAWDGGPGTVFHGDGT
CCCCCEEEEECCCHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCC
GWRTVDLRAESPDVRGHRFSFGYHFDTYFLRNATYNTADWQNAVPTTLANRYRGNTRTQA
CEEEEEEECCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCHHEE
LYAQDAWRFAPGWLATLGLRYERWDAYGGQLGNANATLGYAGRGATALSPKLALEWQPTD
EEECCCCCCCCHHHHHHCCEEEEHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCC
AWRLRLSFATGTRFPTVAELFQGTISNNAIVNNNPNLQPEKAIDWDFTAERDVGFGVVRT
EEEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHH
SVFQSDLRNSIYSQTTVAGASTYTNISNVDRVRVRGVELAFSGQDVAIKGLDVDANVSAT
HHHHHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCC
NAQTLADAANPNYVGARWPRIPRMRANLLASYRFGEHWMTSVGVRYSGRQYNALDNSDVN
CHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCEEECCCEECCCCCCCCC
PNVYGGTSSFAVVDLKARYRFDRHWLASFGIDNVTDRRYYVFHPYPGRTFYGELKWSL
CCEECCCCCEEEEEEHHHHCCCHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEEEECC
>Mature Secondary Structure 
SHELAAHVARTRLAAACVAAFAWPAAHAVTTGAAVPADSTSAAAAETTASGKTLDIVRV
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCHHHCCCCCCEEEEEEE
TAQRPAFASDTPGVVEALTREQIDSHVNVTTEDALKYAPNLMVRRRYIGDRNSVFAGRDF
ECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHCCCCCCEECCCCH
NELQSARGLVYADGILLSNLLGSSYSYPPRWSLIQPDDIARVDVLYGPFSALYPGNAIGS
HHHHHHCCEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCHHHCCCCCCCCC
TVQITTRKPDRLEASVSTQFFTQRYRDGYGFADSFGGNHQTARVADRVGRFWYALSLDRL
EEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHEEEEEEHHHH
ENDSQPMQYASPNGTFDPRLGASVPVTGAVSDIGPNGRPRTIVGAQTIERTEQLNETLRF
CCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEECHHHHHHHHHHHHHHHH
GYAFTDHVDATVTLGHWENHYRQHGDTFLRDAAGNPVYGGNVSFGGRSYTVSPTAFAPQT
CEEEECCCCEEEEECCHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCC
GDQENWLYGLGLDARLASGWKLSATASAYEVSRDVLRSASGAPTGAWDGGPGTVFHGDGT
CCCCCEEEEECCCHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCC
GWRTVDLRAESPDVRGHRFSFGYHFDTYFLRNATYNTADWQNAVPTTLANRYRGNTRTQA
CEEEEEEECCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCHHEE
LYAQDAWRFAPGWLATLGLRYERWDAYGGQLGNANATLGYAGRGATALSPKLALEWQPTD
EEECCCCCCCCHHHHHHCCEEEEHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCC
AWRLRLSFATGTRFPTVAELFQGTISNNAIVNNNPNLQPEKAIDWDFTAERDVGFGVVRT
EEEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHH
SVFQSDLRNSIYSQTTVAGASTYTNISNVDRVRVRGVELAFSGQDVAIKGLDVDANVSAT
HHHHHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCC
NAQTLADAANPNYVGARWPRIPRMRANLLASYRFGEHWMTSVGVRYSGRQYNALDNSDVN
CHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCEEECCCEECCCCCCCCC
PNVYGGTSSFAVVDLKARYRFDRHWLASFGIDNVTDRRYYVFHPYPGRTFYGELKWSL
CCEECCCCCEEEEEEHHHHCCCHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA