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The map label for this gene is csd [H]

Identifier: 83718459

GI number: 83718459

Start: 1545960

End: 1547093

Strand: Direct

Name: csd [H]

Synonym: BTH_I1367

Alternate gene names: 83718459

Gene position: 1545960-1547093 (Clockwise)

Preceding gene: 83721207

Following gene: 83720552

Centisome position: 40.58

GC content: 64.73

Gene sequence:

>1134_bases
ATGCGCCCGATTCATTTCAATACCGCGGGCGCGGGACTGGCGTCGCCGGCGGTCATTCGCGCGATGACCGCCTACCTGAA
CGCCGAGTTCGAGCACGGCGCGTACGAGGCCGAGCGCCTGCACGCCGAGACGCTGGACGCGTTGAGAGCCGGCTTGGCGT
CGTTGCTGAACGCGCGGTCGAGCAGCAGCGTCGCGCTTTTCGACAGCGGCACGCGGGCATGGCTGACGTGCGTGAATGCC
GTCGCCGGGTGGCGCGGCCGCGGCAAGGTGTGGACGACGCCGTACGAATATGCGGGCAACCTGCTCGCGTTGCAGAAGCT
GTGCGCGCGGCATGCGCTCGAACTGGAAGTCGTGCCGCTGCTCGATAACGGCGATCTCGATCTGCAATGGATCGAAACGC
ACGCCGGTGAATCGTTGTGCCTCGCGAGCGTGGTTCATGTCCCTTCGGGGTGCGGCATCGTGCTGCCGGTCGAGCGGATC
GGGCGCATCCTTCGCGACGCGAGTCCGCATGCGCTTTACGCGGTCGATGCCTGCCAGTCCGCCGGCCAGCTCGACATCGA
TGTTCAGCGAATCGGCTGCGACCTGCTGACGGCTGCAGGCCGCAAGTTTCTGCGCGGGCCGCGGGGCACCGGCTTCGCGA
TCGTGTCGCAACGCTGGCTCGACCGTTTGGGCGATCATCCGATCGATCTGCATGCGGCGGAAGTGCTGGCGCTCGACCGG
CATCGATTGCACGACGACAGCGCGCGTCGGCTCGAATTGAGCGAAATGCATCTGGCGGCGTCGATGGGGCTGAAGGTCGC
CGTCGACGAGGCGCGCGGCCGGGATCTCGATGCCGCCCGACGGATCTACGCGGCGCTTTGCGAGCGGCTCGCCGCTCGCG
GCGACGTGACGTTGCTTCATCCGGGATCGGTTCACAGCGGGATCGTGAGCTTCGTGCATCGAGATCGGACGCCCATCGAA
CTCGTTAATCATTTAAGATCACATCGAATCAATGCATGGAAAATCGCGGGCAGTCATACGCCGCTCTATCTGGGCGCACG
CGGATACGAATCGGCCATTCGTTTATCCGTGCATTGCACGAACGCGATGTCCGATATCGACGACCTCGAGCGGGCGCTTT
TCAGTTCGACGTGA

Upstream 100 bases:

>100_bases
CATTTCCTTCATCGCCTCGCCGAAGCGCCGGAGACCGTCCTGCAGGCGCTTGCGGATATCCACGATCCGTCGCGCATCGT
ATTCGGCGGCGAATACTGAG

Downstream 100 bases:

>100_bases
CGCGCACGCTGCTTCGGTGAATCAGGGGACGCGCATTATTCATCGAATCGGCATCGATACATAACAAGCATTTCACTCGC
CGCATCACAGGAACATCAAA

Product: aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MRPIHFNTAGAGLASPAVIRAMTAYLNAEFEHGAYEAERLHAETLDALRAGLASLLNARSSSSVALFDSGTRAWLTCVNA
VAGWRGRGKVWTTPYEYAGNLLALQKLCARHALELEVVPLLDNGDLDLQWIETHAGESLCLASVVHVPSGCGIVLPVERI
GRILRDASPHALYAVDACQSAGQLDIDVQRIGCDLLTAAGRKFLRGPRGTGFAIVSQRWLDRLGDHPIDLHAAEVLALDR
HRLHDDSARRLELSEMHLAASMGLKVAVDEARGRDLDAARRIYAALCERLAARGDVTLLHPGSVHSGIVSFVHRDRTPIE
LVNHLRSHRINAWKIAGSHTPLYLGARGYESAIRLSVHCTNAMSDIDDLERALFSST

Sequences:

>Translated_377_residues
MRPIHFNTAGAGLASPAVIRAMTAYLNAEFEHGAYEAERLHAETLDALRAGLASLLNARSSSSVALFDSGTRAWLTCVNA
VAGWRGRGKVWTTPYEYAGNLLALQKLCARHALELEVVPLLDNGDLDLQWIETHAGESLCLASVVHVPSGCGIVLPVERI
GRILRDASPHALYAVDACQSAGQLDIDVQRIGCDLLTAAGRKFLRGPRGTGFAIVSQRWLDRLGDHPIDLHAAEVLALDR
HRLHDDSARRLELSEMHLAASMGLKVAVDEARGRDLDAARRIYAALCERLAARGDVTLLHPGSVHSGIVSFVHRDRTPIE
LVNHLRSHRINAWKIAGSHTPLYLGARGYESAIRLSVHCTNAMSDIDDLERALFSST
>Mature_377_residues
MRPIHFNTAGAGLASPAVIRAMTAYLNAEFEHGAYEAERLHAETLDALRAGLASLLNARSSSSVALFDSGTRAWLTCVNA
VAGWRGRGKVWTTPYEYAGNLLALQKLCARHALELEVVPLLDNGDLDLQWIETHAGESLCLASVVHVPSGCGIVLPVERI
GRILRDASPHALYAVDACQSAGQLDIDVQRIGCDLLTAAGRKFLRGPRGTGFAIVSQRWLDRLGDHPIDLHAAEVLALDR
HRLHDDSARRLELSEMHLAASMGLKVAVDEARGRDLDAARRIYAALCERLAARGDVTLLHPGSVHSGIVSFVHRDRTPIE
LVNHLRSHRINAWKIAGSHTPLYLGARGYESAIRLSVHCTNAMSDIDDLERALFSST

Specific function: Fe-S cluster biosynthesis [C]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI48994898, Length=223, Percent_Identity=26.457399103139, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787970, Length=184, Percent_Identity=28.2608695652174, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI20129463, Length=234, Percent_Identity=29.0598290598291, Blast_Score=76, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 41047; Mature: 41047

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: PS00595 AA_TRANSFER_CLASS_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPIHFNTAGAGLASPAVIRAMTAYLNAEFEHGAYEAERLHAETLDALRAGLASLLNARS
CCCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
SSSVALFDSGTRAWLTCVNAVAGWRGRGKVWTTPYEYAGNLLALQKLCARHALELEVVPL
CCCEEEEECCCHHHHHHHHHHHCCCCCCCEECCHHHHHCCHHHHHHHHHHHCCEEEEEEE
LDNGDLDLQWIETHAGESLCLASVVHVPSGCGIVLPVERIGRILRDASPHALYAVDACQS
ECCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCCEEEEEHHHCC
AGQLDIDVQRIGCDLLTAAGRKFLRGPRGTGFAIVSQRWLDRLGDHPIDLHAAEVLALDR
CCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
HRLHDDSARRLELSEMHLAASMGLKVAVDEARGRDLDAARRIYAALCERLAARGDVTLLH
HHCCCCCHHHEEHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEC
PGSVHSGIVSFVHRDRTPIELVNHLRSHRINAWKIAGSHTPLYLGARGYESAIRLSVHCT
CCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCEEEEEEEEC
NAMSDIDDLERALFSST
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRPIHFNTAGAGLASPAVIRAMTAYLNAEFEHGAYEAERLHAETLDALRAGLASLLNARS
CCCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
SSSVALFDSGTRAWLTCVNAVAGWRGRGKVWTTPYEYAGNLLALQKLCARHALELEVVPL
CCCEEEEECCCHHHHHHHHHHHCCCCCCCEECCHHHHHCCHHHHHHHHHHHCCEEEEEEE
LDNGDLDLQWIETHAGESLCLASVVHVPSGCGIVLPVERIGRILRDASPHALYAVDACQS
ECCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCCEEEEEHHHCC
AGQLDIDVQRIGCDLLTAAGRKFLRGPRGTGFAIVSQRWLDRLGDHPIDLHAAEVLALDR
CCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
HRLHDDSARRLELSEMHLAASMGLKVAVDEARGRDLDAARRIYAALCERLAARGDVTLLH
HHCCCCCHHHEEHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEC
PGSVHSGIVSFVHRDRTPIELVNHLRSHRINAWKIAGSHTPLYLGARGYESAIRLSVHCT
CCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCEEEEEEEEC
NAMSDIDDLERALFSST
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]