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The map label for this gene is xerD [H]

Identifier: 83590344

GI number: 83590344

Start: 1546865

End: 1547752

Strand: Reverse

Name: xerD [H]

Synonym: Moth_1501

Alternate gene names: 83590344

Gene position: 1547752-1546865 (Counterclockwise)

Preceding gene: 83590345

Following gene: 83590343

Centisome position: 58.88

GC content: 57.09

Gene sequence:

>888_bases
GTGCACGAGCTGGTGGATCAGTTTCTCTATTACCTGGTGGTGGAACGGGGTCTGGCCGAAAATACCCTGGCTTCCTATAA
TAGTGATTTGCAACAGTTTCTTCTCTACCTGGAGGGAGCAGGTGTCAAATCGCCCCGGGATGTGACCCGAGGTTTACTGG
TGGCTTACCTGGTGAAAATGCAGCAGGACGGGCGCTCGCCGGCTACCATTTCCCAGCACCTGGCGGCGCTGAAATCTTTT
TATCATTTCTTGCTGCGGGAGCGCCTGGTGGAAAGCGACCCTACCGCCGACCTGGAATCACCCCGGCAGTCTAAGAAGTT
GCCCCAGGTGCTGACGGTGGCTGAAGTCGAAAAGCTTCTTAACCAGCCGCGCACGGATACCCCGGCTGGTCTAAGGGATA
AAGCCATGCTGGAACTCCTCTATGCCACCGGCCTGCGGGTATCCGAACTGGTGTCCCTCAACGTGGACCAGGTAAACCTG
GAGGGTGAGTTTGTCCGCTGCCTGGGTAAGGGTTCCAAGGAAAGGGTGGTTCCCATGGGCCAGGTAGCCTGCTTCTATGT
CCGGACATACATAGAAAACGGCCGGGGGAAACTAATTAAAAGAGCAACGGAACCGGCCCTGTTTGTCAATCACCACGGCC
GCCGCCTCTCCCGCCAGGGCTGCTGGAAGATCCTCAAGGGTTATGTGCGGGCGGCCAACCTGAAAAAGGACATAACGCCC
CATACCCTGCGCCACTCTTTTGCCACCCATCTGCTGGAAAACGGCGCCGACCTGCGTTCGGTGCAGGAACTCCTGGGGCA
CGCAGATATAGGTACGACCCAGATCTATACCCACCTGACCCGGAAGAAAATCCGGGAGATTTATGATCACACCCACCCGC
GGGCGTAA

Upstream 100 bases:

>100_bases
GGGGCGGATATTTTTTGTGGTTTTTTCTGGCGCTGTTGGAGGACTTTTACCTTTACATGTGGAAATAATCTGGTAAACTT
ATGGGGAACGGTGGTGCATC

Downstream 100 bases:

>100_bases
TGGAGGAAAGGATTGCCATGAAGTTAGATCGGGTCATCATCATCGTTCTTGATAGCGTTGGCGTCGGGGCGCTGCCTGAC
GCTGCCCAATACGGGGACGA

Product: tyrosine recombinase XerD subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MHELVDQFLYYLVVERGLAENTLASYNSDLQQFLLYLEGAGVKSPRDVTRGLLVAYLVKMQQDGRSPATISQHLAALKSF
YHFLLRERLVESDPTADLESPRQSKKLPQVLTVAEVEKLLNQPRTDTPAGLRDKAMLELLYATGLRVSELVSLNVDQVNL
EGEFVRCLGKGSKERVVPMGQVACFYVRTYIENGRGKLIKRATEPALFVNHHGRRLSRQGCWKILKGYVRAANLKKDITP
HTLRHSFATHLLENGADLRSVQELLGHADIGTTQIYTHLTRKKIREIYDHTHPRA

Sequences:

>Translated_295_residues
MHELVDQFLYYLVVERGLAENTLASYNSDLQQFLLYLEGAGVKSPRDVTRGLLVAYLVKMQQDGRSPATISQHLAALKSF
YHFLLRERLVESDPTADLESPRQSKKLPQVLTVAEVEKLLNQPRTDTPAGLRDKAMLELLYATGLRVSELVSLNVDQVNL
EGEFVRCLGKGSKERVVPMGQVACFYVRTYIENGRGKLIKRATEPALFVNHHGRRLSRQGCWKILKGYVRAANLKKDITP
HTLRHSFATHLLENGADLRSVQELLGHADIGTTQIYTHLTRKKIREIYDHTHPRA
>Mature_295_residues
MHELVDQFLYYLVVERGLAENTLASYNSDLQQFLLYLEGAGVKSPRDVTRGLLVAYLVKMQQDGRSPATISQHLAALKSF
YHFLLRERLVESDPTADLESPRQSKKLPQVLTVAEVEKLLNQPRTDTPAGLRDKAMLELLYATGLRVSELVSLNVDQVNL
EGEFVRCLGKGSKERVVPMGQVACFYVRTYIENGRGKLIKRATEPALFVNHHGRRLSRQGCWKILKGYVRAANLKKDITP
HTLRHSFATHLLENGADLRSVQELLGHADIGTTQIYTHLTRKKIREIYDHTHPRA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=292, Percent_Identity=43.1506849315069, Blast_Score=245, Evalue=3e-66,
Organism=Escherichia coli, GI1790244, Length=295, Percent_Identity=35.9322033898305, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI1790768, Length=172, Percent_Identity=33.1395348837209, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790767, Length=200, Percent_Identity=27.5, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33453; Mature: 33453

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHELVDQFLYYLVVERGLAENTLASYNSDLQQFLLYLEGAGVKSPRDVTRGLLVAYLVKM
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
QQDGRSPATISQHLAALKSFYHFLLRERLVESDPTADLESPRQSKKLPQVLTVAEVEKLL
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
NQPRTDTPAGLRDKAMLELLYATGLRVSELVSLNVDQVNLEGEFVRCLGKGSKERVVPMG
CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHH
QVACFYVRTYIENGRGKLIKRATEPALFVNHHGRRLSRQGCWKILKGYVRAANLKKDITP
HHHHHHHHHHHHCCCHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH
HTLRHSFATHLLENGADLRSVQELLGHADIGTTQIYTHLTRKKIREIYDHTHPRA
HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MHELVDQFLYYLVVERGLAENTLASYNSDLQQFLLYLEGAGVKSPRDVTRGLLVAYLVKM
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
QQDGRSPATISQHLAALKSFYHFLLRERLVESDPTADLESPRQSKKLPQVLTVAEVEKLL
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
NQPRTDTPAGLRDKAMLELLYATGLRVSELVSLNVDQVNLEGEFVRCLGKGSKERVVPMG
CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHH
QVACFYVRTYIENGRGKLIKRATEPALFVNHHGRRLSRQGCWKILKGYVRAANLKKDITP
HHHHHHHHHHHHCCCHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH
HTLRHSFATHLLENGADLRSVQELLGHADIGTTQIYTHLTRKKIREIYDHTHPRA
HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]