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The map label for this gene is yjiM [C]

Identifier: 83590265

GI number: 83590265

Start: 1461811

End: 1463121

Strand: Reverse

Name: yjiM [C]

Synonym: Moth_1418

Alternate gene names: 83590265

Gene position: 1463121-1461811 (Counterclockwise)

Preceding gene: 83590266

Following gene: 83590264

Centisome position: 55.66

GC content: 60.34

Gene sequence:

>1311_bases
GTGCATCAAAAACATTTAAAGGAGTTGATCCCCTTGAGCGACACTTACCGGGAAATGTGGCGCGAGCTTAATATGGACCT
GGAGAAACACGACGTTTTTCTGGGGACCCTGCCGGTGGCCTTTGGTGAAGTTTTCTTGCGGCAGGAAAACCGGCCGGCTG
GGATGGCTTATTTCGACAATGCCCTGGCCGAGGCCCACGGCGGCCGGATCCAGGAAATCTTGGCGGGGAAAAAGGCCGGA
AGGATGGTTGCCGGCACCTTCTGCGTCTTTGCCCCGGAAGAACTTATTTTCGCCGTGGACGGCATCAGCATCGGCCTATG
CGGCGGGGCCCAGTTTACCGTTCCCACCGGCGAGCAGGTACTGCCCCGCAACCTGTGCCCGCTGATTAAATCGGCTATGG
GCTTTAAACTGGATCGCATCTGCCCCTATTTCCAGGCCGTCGACTTTCTCATCGGCGAGACTACTTGCGACGGCAAGAAG
AAGACCTGGGAAATCCTCAACGAATACGTGCCGACTTACGTTATGGAGCTGCCCCAGAAAAAAGGAACGGCCGATCTGAC
CCTCTGGGAGGGGGAGATTCACCGCCTCAAGGAAGAGATCGAGCACCGCTCCGGCCGGGAAATCACCGCGGACCGGCTGG
CATCGGGGATTAAAATGGCCAACGCCCGCCGGGACGCCCTGGCGCGCCTCTACCGGGCCCGCTGGGCCGACCCCGTTCCC
ATCAGCGGTAAGGACGCCCTGCTCATCTCCCAGCTTGCTTTCTTTGATGACCCGGAACGCTTTACGGCACAGGTAAACAG
CCTTTGCGACGAGCTGGAGGATCGCATTGCCAGGGGCGAAGGCGTCGCCAGGAAAGGGGCACCGCGCATCCTGGTTACCG
GGACGCCCATGGCCCTGCCTTACTGGAAATTACACCACCTGGTAGAGACAAGCGGGGCGGTAATCGTCGGCGAGGAGACC
TGCACCGGCACCAGGTATTTTGCCGGCCGGGTGGCGGAAGACGGCCGGACGGTAGAGGAGCAGGTGAAAGATTTGGCCCG
GCGGCTGACGGCCATTAACTGCGCCTGCTTTACACCCAACAAGGAACGGGTGGAGGATATCCTGCGCCTGGTAAGGGATG
CCAGAGCCGATGGGGTGATCTATTTCTCCCTCCAGTTCTGCCAGCCCTTTGGCGTCGAGGGCAGGCTGGTGGAAAGGGCC
CTCCAGGAGGCAGGGGTGCCGGTGCTGCGCCTGGAAAGTGACTACAGCGAGGAAGACGTAGCCCAGCTCAAGACGCGGAT
CGAGGCCTTCCTGGAAATGATCGCTTCCTAG

Upstream 100 bases:

>100_bases
GGCGCGTCGCGAATTGCTTTTGTGTGGTTTACGTGGGGGGTTACCCTAACGACTGTTAATTATTATTCAGTTAGAGAAGT
TAGAGAGGAAATAAGCTGCA

Downstream 100 bases:

>100_bases
CCGCGACAACGCCCTGGCGGCGCTGCCGGGCTATCGCCGGCGTGAAGGATAACGCCGGGAACAAAGGTATAGGATGGTTG
AACGGGGTGCAGGGTATTGT

Product: 2-hydroxyglutaryl-CoA dehydratase, D-component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MHQKHLKELIPLSDTYREMWRELNMDLEKHDVFLGTLPVAFGEVFLRQENRPAGMAYFDNALAEAHGGRIQEILAGKKAG
RMVAGTFCVFAPEELIFAVDGISIGLCGGAQFTVPTGEQVLPRNLCPLIKSAMGFKLDRICPYFQAVDFLIGETTCDGKK
KTWEILNEYVPTYVMELPQKKGTADLTLWEGEIHRLKEEIEHRSGREITADRLASGIKMANARRDALARLYRARWADPVP
ISGKDALLISQLAFFDDPERFTAQVNSLCDELEDRIARGEGVARKGAPRILVTGTPMALPYWKLHHLVETSGAVIVGEET
CTGTRYFAGRVAEDGRTVEEQVKDLARRLTAINCACFTPNKERVEDILRLVRDARADGVIYFSLQFCQPFGVEGRLVERA
LQEAGVPVLRLESDYSEEDVAQLKTRIEAFLEMIAS

Sequences:

>Translated_436_residues
MHQKHLKELIPLSDTYREMWRELNMDLEKHDVFLGTLPVAFGEVFLRQENRPAGMAYFDNALAEAHGGRIQEILAGKKAG
RMVAGTFCVFAPEELIFAVDGISIGLCGGAQFTVPTGEQVLPRNLCPLIKSAMGFKLDRICPYFQAVDFLIGETTCDGKK
KTWEILNEYVPTYVMELPQKKGTADLTLWEGEIHRLKEEIEHRSGREITADRLASGIKMANARRDALARLYRARWADPVP
ISGKDALLISQLAFFDDPERFTAQVNSLCDELEDRIARGEGVARKGAPRILVTGTPMALPYWKLHHLVETSGAVIVGEET
CTGTRYFAGRVAEDGRTVEEQVKDLARRLTAINCACFTPNKERVEDILRLVRDARADGVIYFSLQFCQPFGVEGRLVERA
LQEAGVPVLRLESDYSEEDVAQLKTRIEAFLEMIAS
>Mature_436_residues
MHQKHLKELIPLSDTYREMWRELNMDLEKHDVFLGTLPVAFGEVFLRQENRPAGMAYFDNALAEAHGGRIQEILAGKKAG
RMVAGTFCVFAPEELIFAVDGISIGLCGGAQFTVPTGEQVLPRNLCPLIKSAMGFKLDRICPYFQAVDFLIGETTCDGKK
KTWEILNEYVPTYVMELPQKKGTADLTLWEGEIHRLKEEIEHRSGREITADRLASGIKMANARRDALARLYRARWADPVP
ISGKDALLISQLAFFDDPERFTAQVNSLCDELEDRIARGEGVARKGAPRILVTGTPMALPYWKLHHLVETSGAVIVGEET
CTGTRYFAGRVAEDGRTVEEQVKDLARRLTAINCACFTPNKERVEDILRLVRDARADGVIYFSLQFCQPFGVEGRLVERA
LQEAGVPVLRLESDYSEEDVAQLKTRIEAFLEMIAS

Specific function: Unknown

COG id: COG1775

COG function: function code E; Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjiM [H]

Homologues:

Organism=Escherichia coli, GI87082427, Length=386, Percent_Identity=37.5647668393782, Blast_Score=251, Evalue=7e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010327 [H]

Pfam domain/function: PF06050 HGD-D [H]

EC number: NA

Molecular weight: Translated: 48854; Mature: 48854

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHQKHLKELIPLSDTYREMWRELNMDLEKHDVFLGTLPVAFGEVFLRQENRPAGMAYFDN
CCHHHHHHHCCCCHHHHHHHHHHCCCHHHHCEEEEHHHHHHHHHHHHCCCCCCCHHHHHH
ALAEAHGGRIQEILAGKKAGRMVAGTFCVFAPEELIFAVDGISIGLCGGAQFTVPTGEQV
HHHHHCCCHHHHHHHCCCCCCEEEEEEEEECCHHHEEEECCCEEEEECCCEEECCCCCHH
LPRNLCPLIKSAMGFKLDRICPYFQAVDFLIGETTCDGKKKTWEILNEYVPTYVMELPQK
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
KGTADLTLWEGEIHRLKEEIEHRSGREITADRLASGIKMANARRDALARLYRARWADPVP
CCCCEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ISGKDALLISQLAFFDDPERFTAQVNSLCDELEDRIARGEGVARKGAPRILVTGTPMALP
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCH
YWKLHHLVETSGAVIVGEETCTGTRYFAGRVAEDGRTVEEQVKDLARRLTAINCACFTPN
HHHHHHHHHCCCCEEECCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHEEEEECCC
KERVEDILRLVRDARADGVIYFSLQFCQPFGVEGRLVERALQEAGVPVLRLESDYSEEDV
HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHH
AQLKTRIEAFLEMIAS
HHHHHHHHHHHHHHCC
>Mature Secondary Structure
MHQKHLKELIPLSDTYREMWRELNMDLEKHDVFLGTLPVAFGEVFLRQENRPAGMAYFDN
CCHHHHHHHCCCCHHHHHHHHHHCCCHHHHCEEEEHHHHHHHHHHHHCCCCCCCHHHHHH
ALAEAHGGRIQEILAGKKAGRMVAGTFCVFAPEELIFAVDGISIGLCGGAQFTVPTGEQV
HHHHHCCCHHHHHHHCCCCCCEEEEEEEEECCHHHEEEECCCEEEEECCCEEECCCCCHH
LPRNLCPLIKSAMGFKLDRICPYFQAVDFLIGETTCDGKKKTWEILNEYVPTYVMELPQK
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
KGTADLTLWEGEIHRLKEEIEHRSGREITADRLASGIKMANARRDALARLYRARWADPVP
CCCCEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ISGKDALLISQLAFFDDPERFTAQVNSLCDELEDRIARGEGVARKGAPRILVTGTPMALP
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCH
YWKLHHLVETSGAVIVGEETCTGTRYFAGRVAEDGRTVEEQVKDLARRLTAINCACFTPN
HHHHHHHHHCCCCEEECCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHEEEEECCC
KERVEDILRLVRDARADGVIYFSLQFCQPFGVEGRLVERALQEAGVPVLRLESDYSEEDV
HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHH
AQLKTRIEAFLEMIAS
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]