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The map label for this gene is ytfH [H]

Identifier: 83593858

GI number: 83593858

Start: 2938191

End: 2938598

Strand: Direct

Name: ytfH [H]

Synonym: Rru_A2523

Alternate gene names: 83593858

Gene position: 2938191-2938598 (Clockwise)

Preceding gene: 83593856

Following gene: 83593862

Centisome position: 67.5

GC content: 64.22

Gene sequence:

>408_bases
ATGAACGCGCTCGTAGCCGCCCTTGCCCAGCAGGCCGATCCCTATGTCGCCCAATGCCCGACCCGACAGGTTCTTGATCG
CATCGCCGATAAATGGACGGTGCTGATCCTTGGCTTGCTGGTGGAGCGGCCCTATCGCTTCAACGAGATGCGCCGGGCCA
TCGACGGCATTTCCCAAAAGATGCTGTCGCAAACCCTGCGCCGGCTGGAACGCGACGGGCTGGTTCTGCGCACGGTGATC
CCGACGACGCCGGTCAGCGTCGATTACGCCATCACGCCGCTTGGCCACACCCTGGCCGCCGCCCTTGATCCGCTGTTTGC
CTGGATCACCGCCAATTTCGCCCAGATCACCGTCGCCCAAAGCCGTTTTGACGCCACCACCGCCGCCCTGACGGCAAGGC
GGCCATGA

Upstream 100 bases:

>100_bases
TTCACAAATCCCGCAAGAAGGCACTTTCCCCCGCGCAGGTCACCGCAGGGAAACCGCAAGGGGCGTCCTCGAAGGTCCCT
TGCAAAGGAAAATCGCCGCG

Downstream 100 bases:

>100_bases
AAAAGGACCGGACGGCGCTCCGTTGGGAACGCCCTCCGGCCCTTACCGTCAGGTGCGTCAAGCCGCGAAGCTGGAGCCTT
CGATGCCGTAATAGAAACCG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MNALVAALAQQADPYVAQCPTRQVLDRIADKWTVLILGLLVERPYRFNEMRRAIDGISQKMLSQTLRRLERDGLVLRTVI
PTTPVSVDYAITPLGHTLAAALDPLFAWITANFAQITVAQSRFDATTAALTARRP

Sequences:

>Translated_135_residues
MNALVAALAQQADPYVAQCPTRQVLDRIADKWTVLILGLLVERPYRFNEMRRAIDGISQKMLSQTLRRLERDGLVLRTVI
PTTPVSVDYAITPLGHTLAAALDPLFAWITANFAQITVAQSRFDATTAALTARRP
>Mature_135_residues
MNALVAALAQQADPYVAQCPTRQVLDRIADKWTVLILGLLVERPYRFNEMRRAIDGISQKMLSQTLRRLERDGLVLRTVI
PTTPVSVDYAITPLGHTLAAALDPLFAWITANFAQITVAQSRFDATTAALTARRP

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=107, Percent_Identity=39.2523364485981, Blast_Score=99, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 14975; Mature: 14975

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALVAALAQQADPYVAQCPTRQVLDRIADKWTVLILGLLVERPYRFNEMRRAIDGISQK
CHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
MLSQTLRRLERDGLVLRTVIPTTPVSVDYAITPLGHTLAAALDPLFAWITANFAQITVAQ
HHHHHHHHHHHCCEEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHH
SRFDATTAALTARRP
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MNALVAALAQQADPYVAQCPTRQVLDRIADKWTVLILGLLVERPYRFNEMRRAIDGISQK
CHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
MLSQTLRRLERDGLVLRTVIPTTPVSVDYAITPLGHTLAAALDPLFAWITANFAQITVAQ
HHHHHHHHHHHCCEEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHH
SRFDATTAALTARRP
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]