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The map label for this gene is ycdK [C]

Identifier: 82703381

GI number: 82703381

Start: 2573626

End: 2574015

Strand: Reverse

Name: ycdK [C]

Synonym: Nmul_A2263

Alternate gene names: 82703381

Gene position: 2574015-2573626 (Counterclockwise)

Preceding gene: 82703382

Following gene: 82703380

Centisome position: 80.84

GC content: 54.62

Gene sequence:

>390_bases
ATGACACGCAGATTGATCAGTTCAGGCTCCACCTTCGAACAGGAGATCGGTTACTCCAGGGCTGTGGTTGAGGGTGACTG
GGTCTTCGTCTCAGGCACGACAGGCTTTGACTACAGCAAAATGACAATTTCGGACGATCTTCTCGAGCAGACTGAACAAT
GTTTCAGAAATATCGGTGCTGCTCTGGATGAGGCCGGGGCAAGCATGAGAGATATTGTGCGGGTCACCTATATATTGCCT
GAGGCTGCCAACTTCCCCAAGTGCTGGCCCGTATTCCGGAAATATCTCGGGGATGTAAGGCCAGCGGCAATGATGCTGGC
CGCCGGACTGTCCGATCCGCGTATGCGCATCGAGATACAGGTAACCGCAAGGCGCGGCTCAGGAGCGTGA

Upstream 100 bases:

>100_bases
ACAAGAATCAGTGTTTCTCTCACTGAGGAAGACGACCAGCTGTATCCGGAAAAGCGGTGGAGGTTTGTCCGCCTGCCGAC
CATAAAAACAGGAAGCTCAG

Downstream 100 bases:

>100_bases
GATATTTGAACGATCAAGGGAGAGCCTGCCGCTGCTGGCGGAGAGGATGATTGGGACTTGGAATTCTGCGCTAATAATAA
ATGAGGGGGTAATTGATGGC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MTRRLISSGSTFEQEIGYSRAVVEGDWVFVSGTTGFDYSKMTISDDLLEQTEQCFRNIGAALDEAGASMRDIVRVTYILP
EAANFPKCWPVFRKYLGDVRPAAMMLAAGLSDPRMRIEIQVTARRGSGA

Sequences:

>Translated_129_residues
MTRRLISSGSTFEQEIGYSRAVVEGDWVFVSGTTGFDYSKMTISDDLLEQTEQCFRNIGAALDEAGASMRDIVRVTYILP
EAANFPKCWPVFRKYLGDVRPAAMMLAAGLSDPRMRIEIQVTARRGSGA
>Mature_128_residues
TRRLISSGSTFEQEIGYSRAVVEGDWVFVSGTTGFDYSKMTISDDLLEQTEQCFRNIGAALDEAGASMRDIVRVTYILPE
AANFPKCWPVFRKYLGDVRPAAMMLAAGLSDPRMRIEIQVTARRGSGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14292; Mature: 14161

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRRLISSGSTFEQEIGYSRAVVEGDWVFVSGTTGFDYSKMTISDDLLEQTEQCFRNIGA
CCCCCCCCCCCHHHHCCCCEEEEECCEEEEECCCCCCCCEEEECHHHHHHHHHHHHHHHH
ALDEAGASMRDIVRVTYILPEAANFPKCWPVFRKYLGDVRPAAMMLAAGLSDPRMRIEIQ
HHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEE
VTARRGSGA
EEECCCCCC
>Mature Secondary Structure 
TRRLISSGSTFEQEIGYSRAVVEGDWVFVSGTTGFDYSKMTISDDLLEQTEQCFRNIGA
CCCCCCCCCCHHHHCCCCEEEEECCEEEEECCCCCCCCEEEECHHHHHHHHHHHHHHHH
ALDEAGASMRDIVRVTYILPEAANFPKCWPVFRKYLGDVRPAAMMLAAGLSDPRMRIEIQ
HHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEE
VTARRGSGA
EEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]