Click here to switch to the map view.

The map label for this gene is 82703353

Identifier: 82703353

GI number: 82703353

Start: 2538242

End: 2538856

Strand: Reverse

Name: 82703353

Synonym: Nmul_A2235

Alternate gene names: NA

Gene position: 2538856-2538242 (Counterclockwise)

Preceding gene: 82703354

Following gene: 82703352

Centisome position: 79.73

GC content: 53.66

Gene sequence:

>615_bases
ATGAAAAACATCAGCAAAATCCGCTCGGGAATATACCGGAAATACTTCAGCGCCATGCTGGCAATCTTGCTTCTGGCAGC
GAGTGCCGGAAGCGAGGCGACTACAGTTCTCCTGCGCCGCCCGATACCCTTGCTTCCCGAGGCTGCCGTCCGGTTGAATC
AGGTCCATGCGGGCAAAGATCCCGGGAGGTGGCAATTGATCGTTTTCGGGTTTGCCCACTGCAAGGATGTCTGTCCGGCG
TCGCTCGCCAATCTCTCCATGCTGGTCAAAGCTGGCGCCGCCGAACGGATCAGGCTCAGTGGACTCTTTGTAACAATAGA
TCCGGACCGGGACACCGACGCAACGCTGTCACAGTACATCAAGGCCTTCGGAACCGACCTTGGTTATTTGCGGCTCGAGG
GTGGGGAACTGGAGCGCTTCAAGGCCGCTTTCAGTGTGGAAACCGCCTTCTATACGAAAAATGCCGGGAACATGCAGAAT
TATCAGGTGGATCATAGCACTACTGCGTTTCTGATCGATCCCGCCGGAAATATCAGGGTGATATTCGATGCATTGACGGA
CGCCACCGATATAGAAGATTTATTTCGCAAGAACAGGACATTGTTTGAATCATGA

Upstream 100 bases:

>100_bases
TATTTCGTATTCCGGCCCATCTTCTCCTTCGGGGATCTTCCCGGAAATTGAACAGGGTGGACCCTGTTCGGAAGCCAACC
AAGAATCCATTGACTTGACT

Downstream 100 bases:

>100_bases
GTCGCTCAAATGTACTGCTCCCACTGCTGATGGTCTTCTCTCTCACTGCATCCGCCATGCAGATCGATGCCGATCCCCGT
ACGATCGTATCTTTCATGGA

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MKNISKIRSGIYRKYFSAMLAILLLAASAGSEATTVLLRRPIPLLPEAAVRLNQVHAGKDPGRWQLIVFGFAHCKDVCPA
SLANLSMLVKAGAAERIRLSGLFVTIDPDRDTDATLSQYIKAFGTDLGYLRLEGGELERFKAAFSVETAFYTKNAGNMQN
YQVDHSTTAFLIDPAGNIRVIFDALTDATDIEDLFRKNRTLFES

Sequences:

>Translated_204_residues
MKNISKIRSGIYRKYFSAMLAILLLAASAGSEATTVLLRRPIPLLPEAAVRLNQVHAGKDPGRWQLIVFGFAHCKDVCPA
SLANLSMLVKAGAAERIRLSGLFVTIDPDRDTDATLSQYIKAFGTDLGYLRLEGGELERFKAAFSVETAFYTKNAGNMQN
YQVDHSTTAFLIDPAGNIRVIFDALTDATDIEDLFRKNRTLFES
>Mature_204_residues
MKNISKIRSGIYRKYFSAMLAILLLAASAGSEATTVLLRRPIPLLPEAAVRLNQVHAGKDPGRWQLIVFGFAHCKDVCPA
SLANLSMLVKAGAAERIRLSGLFVTIDPDRDTDATLSQYIKAFGTDLGYLRLEGGELERFKAAFSVETAFYTKNAGNMQN
YQVDHSTTAFLIDPAGNIRVIFDALTDATDIEDLFRKNRTLFES

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=145, Percent_Identity=31.0344827586207, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI281182722, Length=145, Percent_Identity=31.0344827586207, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI281182716, Length=145, Percent_Identity=31.0344827586207, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI153791313, Length=145, Percent_Identity=31.0344827586207, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4759068, Length=119, Percent_Identity=34.453781512605, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17531419, Length=135, Percent_Identity=25.1851851851852, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6319498, Length=122, Percent_Identity=30.327868852459, Blast_Score=70, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6319511, Length=119, Percent_Identity=35.2941176470588, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI19920710, Length=118, Percent_Identity=30.5084745762712, Blast_Score=74, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22508; Mature: 22508

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNISKIRSGIYRKYFSAMLAILLLAASAGSEATTVLLRRPIPLLPEAAVRLNQVHAGKD
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCC
PGRWQLIVFGFAHCKDVCPASLANLSMLVKAGAAERIRLSGLFVTIDPDRDTDATLSQYI
CCCEEEEEEEHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCHHHHHHHH
KAFGTDLGYLRLEGGELERFKAAFSVETAFYTKNAGNMQNYQVDHSTTAFLIDPAGNIRV
HHHCCCCCEEEECCCCHHHHHHHHHHEEHEEECCCCCCCCEEECCCCEEEEEECCCCEEE
IFDALTDATDIEDLFRKNRTLFES
EEECCCCCCCHHHHHHCCCCCCCC
>Mature Secondary Structure
MKNISKIRSGIYRKYFSAMLAILLLAASAGSEATTVLLRRPIPLLPEAAVRLNQVHAGKD
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCC
PGRWQLIVFGFAHCKDVCPASLANLSMLVKAGAAERIRLSGLFVTIDPDRDTDATLSQYI
CCCEEEEEEEHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCHHHHHHHH
KAFGTDLGYLRLEGGELERFKAAFSVETAFYTKNAGNMQNYQVDHSTTAFLIDPAGNIRV
HHHCCCCCEEEECCCCHHHHHHHHHHEEHEEECCCCCCCCEEECCCCEEEEEECCCCEEE
IFDALTDATDIEDLFRKNRTLFES
EEECCCCCCCHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]