| Definition | Nitrosospira multiformis ATCC 25196 chromosome, complete genome. |
|---|---|
| Accession | NC_007614 |
| Length | 3,184,243 |
Click here to switch to the map view.
The map label for this gene is uvrA [H]
Identifier: 82703347
GI number: 82703347
Start: 2530367
End: 2533201
Strand: Direct
Name: uvrA [H]
Synonym: Nmul_A2229
Alternate gene names: 82703347
Gene position: 2530367-2533201 (Clockwise)
Preceding gene: 82703333
Following gene: 82703348
Centisome position: 79.47
GC content: 55.73
Gene sequence:
>2835_bases ATGGAACTCATCAAGATCCGCGGTGCGCGCACGCACAACCTCAAAAACATCAACCTCGACTTGCCGCGCAACAAGCTTGT CGTCATTACGGGCCTGTCCGGCTCGGGCAAGTCTTCGCTGGCGTTCGACACGCTCTATGCGGAAGGCCAACGGCGTTATG TGGAATCGCTCTCAGCGTACGCCCGCCAGTTCCTGCAATTGATGGAAAAACCGGATGTCGATCTGATTGAAGGATTATCG CCCGCCATAGCCATAGAGCAGAAGGCGACTTCCCATAACCCGCGTTCGACTGTCGGCACTGTCACTGAAATACATGATTA CCTGCGCCTGCTTTTCGCACGGGTAGGAGATCCGCAGTGCCCCGATCATGGCATCACGCTGACTGTGCAGAGCGTTTCCC AGATGGTCGATCATGTGCTGCGACTGCCGCCGGATACCCGGCTGATGATACTTGCTCCACTGGTAGTGGGGCGCAAGGGC GAGCAGGTGGAGTTGATCGATGAACTGCGCGCGCAGGGCTTCATCCGGCTGCGGATCGACGGGAAAGTATACGAAATCGA CGCCCTGCCCAAGCTGCAAAAAAACCAGAAGCATACGATCGAGGTGGTAATCGACAGGCTCAAGGTTTCACCGGATTCGA AGCAGCGGTTGGCGGAATCATTCGAAACCGCCCTGCGCCACGCCGAGGGGCGCGCACTGGCGGTAGAGATGGATTCCGGG GCAGAGCATCTTTTTTCAGCCAGGTTCAGTTGCCCGATATGCAGCTATTCGCTGCCCGAACTCGAACCCCGTCTGTTTTC GTTCAACAACCCCATGGGCGCCTGCCCCAAATGCGATGGCCTGGGCAGAATCACCTTCTTCGATCCCAAACGGATCGTCG CGTTTCCGCATCTGTCACTGGCGGCCGGCGCCATCAAGGGATGGGACAGGCGCAACCAGTTTTATCATCAATTACTGGCG AGCCTGGCCAGTCATTACGATTTTGATCTGGAAATACCTTTCGAGCAATTGAACAGCCATATTCAGGATCTCATCCTGAA TGGATCCGGCAATGAAAAAATCACGTTTTCGTATCTGAACGAAAACGGATCGAGAAATTATCGCAAGCATACGTTCGAGG GAATCCTTCCCAACCTGGAACGGCGCTACAAGGAAACCGATTCAGTTACCGTACGCGAGGAACTGGCGAAATACCTGAAT TCCCAGCTCTGCCCTGAATGTGCCGGAACCCGCTTGCGGCGGGAAGCTCGCCATGTGCATGTAGGCGGCATGGCAATATA TGAAATCAACGCTTTGCCGCTGAAAGAAGCAAAGGTTTTTTTCGACCAGGTGACGCTGACCGGGCATAAGCTTGCCATTG CAGAGAAGATCATCAAGGAAATCTCAAGCCGTATATCATTTCTCAACAATGTCGGACTGGACTACCTGTCGCTGGATCGC TCCGCCGATACCTTGTCCGGAGGGGAATCCCAGCGCATCCGGCTTGCCAGCCAGATCGGATCAGGTCTCACCGGTGTGAT GTATGTGCTCGATGAGCCTTCCATCGGCCTGCACCAGCGGGACAACAGCCGCCTGCTGAAAACCCTCAAGAATCTGCGCG ATCTCGGCAACAGCGTGATCGTGGTGGAACACGATCAGGATGCAATACTGACCGCCGATCACGTGATAGACATGGGTCCG GGAGCCGGTGAGCATGGTGGAGCCATTATCGCTCAGGGTACGCCGGAAGCTATCCAGCGCGACGCCGGTTCCCTTACCGG AAAATACCTTTCGGGCGAATTGACCATAAGCACGCCCGAAAAACGCACCGAACCGAAAAATGACCGCTGGCTGCGGATTG AAGGCGCATCCGGAAACAACCTGAAAAACGTCACCCTGAACCTGCCCGTGGGATTGTTCGTTTGCGTTACCGGTGTATCC GGCTCGGGTAAATCCACTCTCATCAACGAAACGCTCTATCAAGCCGCTGCCCGGCATCTTTATGGCAGCGCAACAGAACC CGCTCCCTATCAGAATCTGGAAGGACTGGCGTTTTTCGACAAAGTGATCAGCGTGGACCAAAGCCCCATCGGACGCACGC CACGCTCGAATCCAGCCACTTATACCGGCTTGTTCACTCCGATCCGGGAGTTATTTGCGGGTGTGCCGCAGGCGCGGGAA CGCGGCTATGGACCGGGGCGGTTTTCGTTCAATGTGAAGGGGGGGCGTTGCGAAGCCTGCCAGGGTGACGGCATGATCAA GGTGGAAATGCACTTTCTCCCCGATATCTATGTATCGTGCGATGTCTGCCACGGCAAGCGCTACAACCGCGAAACGCTGG AGATTCAATACAAGGGAAAAAACATTCATGAAATCCTGCAGATGACGGTAGAGCAGGCGCATGAATTTTTCAGTCCCGTA CCCGTGGTGGCGCGCAAGCTCCAGACCTTGCTGGATGTCGGCCTGGGTTACATCAGCCTGGGCCAATCGGCAACGACGCT TTCAGGCGGCGAAGCGCAACGGGTGAAACTGTCGCTGGAGCTCTCCAAACGGGATACCGGACGTACGCTCTACATTCTGG ATGAACCCACCACCGGGCTTCATTTCCAGGATATCGACCTCCTGCTCAAAGTGTTGCATCGATTGCGCGACCATGGCAAT ACAGTGGTCGTGATCGAACACAACCTGGATGTGATCAAGACTGCGGACTGGATTATCGATCTCGGCCCCGAAGGCGGCGA AGGGGGCGGTGAAATCATCGCACAGGGTCCGCCGGAGGAAATAGCAGCGAATGAAAGAAGCTTTACCGGGCATCACCTCA GGGGCATGCTGGAGAATCTTCACGCGACCGCCTGA
Upstream 100 bases:
>100_bases GAAAACGCGGAAACTTGAGTATATTAACAGGTTTGGCCGGTTCTCAGGTAGCCTTGCCTCGGTGGACGAGCAGGCGCCGG ACCGTCAGCGAAAGGAGTCA
Downstream 100 bases:
>100_bases ATGCATTGAGAGATCGAGGCGCGTGATGAATGCTCGGGCACTCCTGCTCAACAGCTTCGAGGCCGCGCTCGCCGCAGCCG ATCCGTTGCGTGTCGTATCC
Product: excinuclease ABC subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 944; Mature: 944
Protein sequence:
>944_residues MELIKIRGARTHNLKNINLDLPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLS PAIAIEQKATSHNPRSTVGTVTEIHDYLRLLFARVGDPQCPDHGITLTVQSVSQMVDHVLRLPPDTRLMILAPLVVGRKG EQVELIDELRAQGFIRLRIDGKVYEIDALPKLQKNQKHTIEVVIDRLKVSPDSKQRLAESFETALRHAEGRALAVEMDSG AEHLFSARFSCPICSYSLPELEPRLFSFNNPMGACPKCDGLGRITFFDPKRIVAFPHLSLAAGAIKGWDRRNQFYHQLLA SLASHYDFDLEIPFEQLNSHIQDLILNGSGNEKITFSYLNENGSRNYRKHTFEGILPNLERRYKETDSVTVREELAKYLN SQLCPECAGTRLRREARHVHVGGMAIYEINALPLKEAKVFFDQVTLTGHKLAIAEKIIKEISSRISFLNNVGLDYLSLDR SADTLSGGESQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNSRLLKTLKNLRDLGNSVIVVEHDQDAILTADHVIDMGP GAGEHGGAIIAQGTPEAIQRDAGSLTGKYLSGELTISTPEKRTEPKNDRWLRIEGASGNNLKNVTLNLPVGLFVCVTGVS GSGKSTLINETLYQAAARHLYGSATEPAPYQNLEGLAFFDKVISVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPQARE RGYGPGRFSFNVKGGRCEACQGDGMIKVEMHFLPDIYVSCDVCHGKRYNRETLEIQYKGKNIHEILQMTVEQAHEFFSPV PVVARKLQTLLDVGLGYISLGQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFQDIDLLLKVLHRLRDHGN TVVVIEHNLDVIKTADWIIDLGPEGGEGGGEIIAQGPPEEIAANERSFTGHHLRGMLENLHATA
Sequences:
>Translated_944_residues MELIKIRGARTHNLKNINLDLPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLS PAIAIEQKATSHNPRSTVGTVTEIHDYLRLLFARVGDPQCPDHGITLTVQSVSQMVDHVLRLPPDTRLMILAPLVVGRKG EQVELIDELRAQGFIRLRIDGKVYEIDALPKLQKNQKHTIEVVIDRLKVSPDSKQRLAESFETALRHAEGRALAVEMDSG AEHLFSARFSCPICSYSLPELEPRLFSFNNPMGACPKCDGLGRITFFDPKRIVAFPHLSLAAGAIKGWDRRNQFYHQLLA SLASHYDFDLEIPFEQLNSHIQDLILNGSGNEKITFSYLNENGSRNYRKHTFEGILPNLERRYKETDSVTVREELAKYLN SQLCPECAGTRLRREARHVHVGGMAIYEINALPLKEAKVFFDQVTLTGHKLAIAEKIIKEISSRISFLNNVGLDYLSLDR SADTLSGGESQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNSRLLKTLKNLRDLGNSVIVVEHDQDAILTADHVIDMGP GAGEHGGAIIAQGTPEAIQRDAGSLTGKYLSGELTISTPEKRTEPKNDRWLRIEGASGNNLKNVTLNLPVGLFVCVTGVS GSGKSTLINETLYQAAARHLYGSATEPAPYQNLEGLAFFDKVISVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPQARE RGYGPGRFSFNVKGGRCEACQGDGMIKVEMHFLPDIYVSCDVCHGKRYNRETLEIQYKGKNIHEILQMTVEQAHEFFSPV PVVARKLQTLLDVGLGYISLGQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFQDIDLLLKVLHRLRDHGN TVVVIEHNLDVIKTADWIIDLGPEGGEGGGEIIAQGPPEEIAANERSFTGHHLRGMLENLHATA >Mature_944_residues MELIKIRGARTHNLKNINLDLPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLS PAIAIEQKATSHNPRSTVGTVTEIHDYLRLLFARVGDPQCPDHGITLTVQSVSQMVDHVLRLPPDTRLMILAPLVVGRKG EQVELIDELRAQGFIRLRIDGKVYEIDALPKLQKNQKHTIEVVIDRLKVSPDSKQRLAESFETALRHAEGRALAVEMDSG AEHLFSARFSCPICSYSLPELEPRLFSFNNPMGACPKCDGLGRITFFDPKRIVAFPHLSLAAGAIKGWDRRNQFYHQLLA SLASHYDFDLEIPFEQLNSHIQDLILNGSGNEKITFSYLNENGSRNYRKHTFEGILPNLERRYKETDSVTVREELAKYLN SQLCPECAGTRLRREARHVHVGGMAIYEINALPLKEAKVFFDQVTLTGHKLAIAEKIIKEISSRISFLNNVGLDYLSLDR SADTLSGGESQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNSRLLKTLKNLRDLGNSVIVVEHDQDAILTADHVIDMGP GAGEHGGAIIAQGTPEAIQRDAGSLTGKYLSGELTISTPEKRTEPKNDRWLRIEGASGNNLKNVTLNLPVGLFVCVTGVS GSGKSTLINETLYQAAARHLYGSATEPAPYQNLEGLAFFDKVISVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPQARE RGYGPGRFSFNVKGGRCEACQGDGMIKVEMHFLPDIYVSCDVCHGKRYNRETLEIQYKGKNIHEILQMTVEQAHEFFSPV PVVARKLQTLLDVGLGYISLGQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFQDIDLLLKVLHRLRDHGN TVVVIEHNLDVIKTADWIIDLGPEGGEGGGEIIAQGPPEEIAANERSFTGHHLRGMLENLHATA
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=940, Percent_Identity=68.0851063829787, Blast_Score=1306, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 104451; Mature: 104451
Theoretical pI: Translated: 6.90; Mature: 6.90
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELIKIRGARTHNLKNINLDLPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHH ARQFLQLMEKPDVDLIEGLSPAIAIEQKATSHNPRSTVGTVTEIHDYLRLLFARVGDPQC HHHHHHHHHCCCCHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC PDHGITLTVQSVSQMVDHVLRLPPDTRLMILAPLVVGRKGEQVELIDELRAQGFIRLRID CCCCEEEEHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCCEEHHHHHHHHCCEEEEEEC GKVYEIDALPKLQKNQKHTIEVVIDRLKVSPDSKQRLAESFETALRHAEGRALAVEMDSG CEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC AEHLFSARFSCPICSYSLPELEPRLFSFNNPMGACPKCDGLGRITFFDPKRIVAFPHLSL HHHHHHHCCCCCCCCCCCCCCCCHHEECCCCCCCCCCCCCCCEEEEECCCEEEECCCHHH AAGAIKGWDRRNQFYHQLLASLASHYDFDLEIPFEQLNSHIQDLILNGSGNEKITFSYLN HHHHHCCCHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHEEECCCCCCEEEEEEEC ENGSRNYRKHTFEGILPNLERRYKETDSVTVREELAKYLNSQLCPECAGTRLRREARHVH CCCCCCHHHHHHHHCCCHHHHHHHCCCCEEHHHHHHHHHHHHCCHHHHHHHHHHHHCEEE VGGMAIYEINALPLKEAKVFFDQVTLTGHKLAIAEKIIKEISSRISFLNNVGLDYLSLDR ECCEEEEEECCCCHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC SADTLSGGESQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNSRLLKTLKNLRDLGNSVI CCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEE VVEHDQDAILTADHVIDMGPGAGEHGGAIIAQGTPEAIQRDAGSLTGKYLSGELTISTPE EEECCCCCEEEECCEEECCCCCCCCCCEEEECCCHHHHHHCCCCCCCEEEECEEEEECCH KRTEPKNDRWLRIEGASGNNLKNVTLNLPVGLFVCVTGVSGSGKSTLINETLYQAAARHL HHCCCCCCCEEEEECCCCCCEEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH YGSATEPAPYQNLEGLAFFDKVISVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPQARE CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCHHHH RGYGPGRFSFNVKGGRCEACQGDGMIKVEMHFLPDIYVSCDVCHGKRYNRETLEIQYKGK CCCCCCEEEEEECCCEECCCCCCCEEEEEEEECCCEEEEEEEECCCCCCCCEEEEEECCC NIHEILQMTVEQAHEFFSPVPVVARKLQTLLDVGLGYISLGQSATTLSGGEAQRVKLSLE CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEEEEE LSKRDTGRTLYILDEPTTGLHFQDIDLLLKVLHRLRDHGNTVVVIEHNLDVIKTADWIID ECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCEEEE LGPEGGEGGGEIIAQGPPEEIAANERSFTGHHLRGMLENLHATA ECCCCCCCCCEEEECCCCHHHCCCCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MELIKIRGARTHNLKNINLDLPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHH ARQFLQLMEKPDVDLIEGLSPAIAIEQKATSHNPRSTVGTVTEIHDYLRLLFARVGDPQC HHHHHHHHHCCCCHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC PDHGITLTVQSVSQMVDHVLRLPPDTRLMILAPLVVGRKGEQVELIDELRAQGFIRLRID CCCCEEEEHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCCEEHHHHHHHHCCEEEEEEC GKVYEIDALPKLQKNQKHTIEVVIDRLKVSPDSKQRLAESFETALRHAEGRALAVEMDSG CEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC AEHLFSARFSCPICSYSLPELEPRLFSFNNPMGACPKCDGLGRITFFDPKRIVAFPHLSL HHHHHHHCCCCCCCCCCCCCCCCHHEECCCCCCCCCCCCCCCEEEEECCCEEEECCCHHH AAGAIKGWDRRNQFYHQLLASLASHYDFDLEIPFEQLNSHIQDLILNGSGNEKITFSYLN HHHHHCCCHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHEEECCCCCCEEEEEEEC ENGSRNYRKHTFEGILPNLERRYKETDSVTVREELAKYLNSQLCPECAGTRLRREARHVH CCCCCCHHHHHHHHCCCHHHHHHHCCCCEEHHHHHHHHHHHHCCHHHHHHHHHHHHCEEE VGGMAIYEINALPLKEAKVFFDQVTLTGHKLAIAEKIIKEISSRISFLNNVGLDYLSLDR ECCEEEEEECCCCHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC SADTLSGGESQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNSRLLKTLKNLRDLGNSVI CCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEE VVEHDQDAILTADHVIDMGPGAGEHGGAIIAQGTPEAIQRDAGSLTGKYLSGELTISTPE EEECCCCCEEEECCEEECCCCCCCCCCEEEECCCHHHHHHCCCCCCCEEEECEEEEECCH KRTEPKNDRWLRIEGASGNNLKNVTLNLPVGLFVCVTGVSGSGKSTLINETLYQAAARHL HHCCCCCCCEEEEECCCCCCEEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH YGSATEPAPYQNLEGLAFFDKVISVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPQARE CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCHHHH RGYGPGRFSFNVKGGRCEACQGDGMIKVEMHFLPDIYVSCDVCHGKRYNRETLEIQYKGK CCCCCCEEEEEECCCEECCCCCCCEEEEEEEECCCEEEEEEEECCCCCCCCEEEEEECCC NIHEILQMTVEQAHEFFSPVPVVARKLQTLLDVGLGYISLGQSATTLSGGEAQRVKLSLE CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEEEEE LSKRDTGRTLYILDEPTTGLHFQDIDLLLKVLHRLRDHGNTVVVIEHNLDVIKTADWIID ECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCEEEE LGPEGGEGGGEIIAQGPPEEIAANERSFTGHHLRGMLENLHATA ECCCCCCCCCEEEECCCCHHHCCCCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9197406 [H]