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The map label for this gene is ygiT [H]

Identifier: 82703328

GI number: 82703328

Start: 2511982

End: 2512455

Strand: Direct

Name: ygiT [H]

Synonym: Nmul_A2210

Alternate gene names: 82703328

Gene position: 2511982-2512455 (Clockwise)

Preceding gene: 82703327

Following gene: 82703329

Centisome position: 78.89

GC content: 54.43

Gene sequence:

>474_bases
ATGAGATGTTCACTGTGCGGGAAGGGCGAGGTGGTAGCGGGTACCCGCGATGTGCCCTTTACCTATAAGGGCCAAAAAAC
CTTTATTAAAAATATTCGGGGGGAGTACTGCAACCGCTGCGGCGAGGGTTACTATGGCCCGGAGCACGATGGCGATATTC
TCATGGCCGGATACCGCGAGTTCAGAGAAAAAGTCGATACTGTGCTGGCCGAGCAGGCCACATTCGTGGAGCAGGTGCGG
AAGAAACTGGGGCTCGACCAGCGTGAAGCAGGGGAGATTTTTGGCGGCGGAGTGAATGCCTTTTCGCGTTATGAGACTGG
AAAAGTCAGAACACCGGTCTCTGTCATGCAGCTGTTCACGCTACTCGACCGGCACCCTGAGCTACTTGAGGAAATCAGGC
AGAATAGATATCGGACCAGGGGTACACAGGAGCTTCGTGAGGAAGTATCCGCGCAGAAGGAACTGACGGATTGA

Upstream 100 bases:

>100_bases
CAAGACGTGTATCACGGCGACGGGCCAACGAAAAAAGTGGTTTACCTGAAATTCATTGTCACGAACGACGTATTGATACT
TTCCTTTAAGGAGAAATGAG

Downstream 100 bases:

>100_bases
GCGAGAAAAACATGGAGTGCGTCATATGTTGGAAGGGCGAACTTGTACGCGATACGCGTGATGTGTCTTTTACCTACAAG
TGTCAAAAGACCTTCATTAA

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MRCSLCGKGEVVAGTRDVPFTYKGQKTFIKNIRGEYCNRCGEGYYGPEHDGDILMAGYREFREKVDTVLAEQATFVEQVR
KKLGLDQREAGEIFGGGVNAFSRYETGKVRTPVSVMQLFTLLDRHPELLEEIRQNRYRTRGTQELREEVSAQKELTD

Sequences:

>Translated_157_residues
MRCSLCGKGEVVAGTRDVPFTYKGQKTFIKNIRGEYCNRCGEGYYGPEHDGDILMAGYREFREKVDTVLAEQATFVEQVR
KKLGLDQREAGEIFGGGVNAFSRYETGKVRTPVSVMQLFTLLDRHPELLEEIRQNRYRTRGTQELREEVSAQKELTD
>Mature_157_residues
MRCSLCGKGEVVAGTRDVPFTYKGQKTFIKNIRGEYCNRCGEGYYGPEHDGDILMAGYREFREKVDTVLAEQATFVEQVR
KKLGLDQREAGEIFGGGVNAFSRYETGKVRTPVSVMQLFTLLDRHPELLEEIRQNRYRTRGTQELREEVSAQKELTD

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789398, Length=135, Percent_Identity=49.6296296296296, Blast_Score=134, Evalue=2e-33,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR022452
- InterPro:   IPR022453 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17965; Mature: 17965

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCSLCGKGEVVAGTRDVPFTYKGQKTFIKNIRGEYCNRCGEGYYGPEHDGDILMAGYRE
CCCCCCCCCCEEECCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
FREKVDTVLAEQATFVEQVRKKLGLDQREAGEIFGGGVNAFSRYETGKVRTPVSVMQLFT
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHH
LLDRHPELLEEIRQNRYRTRGTQELREEVSAQKELTD
HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRCSLCGKGEVVAGTRDVPFTYKGQKTFIKNIRGEYCNRCGEGYYGPEHDGDILMAGYRE
CCCCCCCCCCEEECCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
FREKVDTVLAEQATFVEQVRKKLGLDQREAGEIFGGGVNAFSRYETGKVRTPVSVMQLFT
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHH
LLDRHPELLEEIRQNRYRTRGTQELREEVSAQKELTD
HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]