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The map label for this gene is intB [H]

Identifier: 82703302

GI number: 82703302

Start: 2479299

End: 2480510

Strand: Reverse

Name: intB [H]

Synonym: Nmul_A2184

Alternate gene names: 82703302

Gene position: 2480510-2479299 (Counterclockwise)

Preceding gene: 82703303

Following gene: 82703301

Centisome position: 77.9

GC content: 53.88

Gene sequence:

>1212_bases
ATGGCACTTACCGACACCGCTATTCGCAATACCAAGTCTGCTGACAAACCTCTCAAGCTAACAGATGAGCGCGGGCTATA
CCTGCTGCTCAAACCCAATGGCTCCCGCTGGTGGCGATTTGATTACCGCTATGGCGGCAAACGCAAAACCCTCTCCATGG
GTGTTTATCCCGACGTGAGCTTGAAAGACGCCCGTAATCGCCGTGACGAAGCTCGCAAGTTGCTTGCTTCCGATGTCGAT
CCCGGCGAAAACCGTAAAGCGGTCAAAGCTGCTAAGCTGGAAAAGACTACAAACAGTTTCGAAGTGATCACCAGGGAATG
GTATGCGAAGTTTTCCCCGACCTGGAATGAAAGCCATGGTGAGCGAATTATTCGCCGGTTCGAGCGCGATATCTTTCCCT
GGATTGGTAGCAAGCCCATTTCCGAGATAGCAGCACCTGAACTGCTGGCAACAGTGCGGCGCATCGAAAGCAGGGGCGCA
GTGGAAACCGCGCATAGGGCATTGGGTAACTGTGGACAAGTTTTTCGCTATGCCATCGCAACCGCACGTGCTACCCGAGA
TATTTCCGCTGATTTGAGAGGCGCCCTTCCCCCGGTGAAGGGAGAACATTTTGCCGCCATTACCGAACCTAAACAGGTAG
GCGCATTGCTGCGGGCAATCGATGGCTATACAGGTTCTCACGTTGTACGTTGTGCATTGCGCCTTGCTCCACTGGTATTT
GTGCGCCCAGGCGAGCTGCGCAAAGCCGAATGGAAGGATATAGACCTGGATGGCGGGGAATGGCGCTATACCGTCACCAA
GACCAATACCCCGCACATTGTTCCCCTCTCAACACAAGCCGTGGAAATCCTCAAGGAACTGCAAGCTTTAACAGGCAGAA
GCCGCTTTGTTTTCCCCGGTGCGCGTACCAATGGCCGGCCCATGAGTGATAATGCAATCCTTGCTGCCCTGCGACGCATG
GGCATAGACAAGGAAGAAATGAGTGGCCATGGTTTTCGCGCCATGGCGCGAACCATTCTTGATGAAGTGCTAGGCGTTCG
TCCTGACTTTATCGAACACCAGTTAGCTCATTCGGTAAGAGACCCTAATGGCCGCGCCTATAATCGAACCGCTCATCTAC
CCGAGCGTCGCAAGATGATGCAGCAATGGGCGGATTACCTGGACAAACTCAAAGCTGGTGCCGAAATCATCCCCTTGCAT
GGCGTGGCCTAG

Upstream 100 bases:

>100_bases
TTTTGTTGTCCAAACAAATCCAAACTCATCTATTGAAATCCGACGGTAACTGACGGTAAACTTGACGGTAATAGAGTTAC
CGCCAACTGGAGTTACCGTC

Downstream 100 bases:

>100_bases
AGAAGTAATGGGCTCTCGGGAAAACCATGAGTGAAGATAACGCTTGGCCTTGGGGACTTCGCAAGCCAAATTGGGATAAC
TGGAAATCGGTTAAACAGGC

Product: Phage integrase

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MALTDTAIRNTKSADKPLKLTDERGLYLLLKPNGSRWWRFDYRYGGKRKTLSMGVYPDVSLKDARNRRDEARKLLASDVD
PGENRKAVKAAKLEKTTNSFEVITREWYAKFSPTWNESHGERIIRRFERDIFPWIGSKPISEIAAPELLATVRRIESRGA
VETAHRALGNCGQVFRYAIATARATRDISADLRGALPPVKGEHFAAITEPKQVGALLRAIDGYTGSHVVRCALRLAPLVF
VRPGELRKAEWKDIDLDGGEWRYTVTKTNTPHIVPLSTQAVEILKELQALTGRSRFVFPGARTNGRPMSDNAILAALRRM
GIDKEEMSGHGFRAMARTILDEVLGVRPDFIEHQLAHSVRDPNGRAYNRTAHLPERRKMMQQWADYLDKLKAGAEIIPLH
GVA

Sequences:

>Translated_403_residues
MALTDTAIRNTKSADKPLKLTDERGLYLLLKPNGSRWWRFDYRYGGKRKTLSMGVYPDVSLKDARNRRDEARKLLASDVD
PGENRKAVKAAKLEKTTNSFEVITREWYAKFSPTWNESHGERIIRRFERDIFPWIGSKPISEIAAPELLATVRRIESRGA
VETAHRALGNCGQVFRYAIATARATRDISADLRGALPPVKGEHFAAITEPKQVGALLRAIDGYTGSHVVRCALRLAPLVF
VRPGELRKAEWKDIDLDGGEWRYTVTKTNTPHIVPLSTQAVEILKELQALTGRSRFVFPGARTNGRPMSDNAILAALRRM
GIDKEEMSGHGFRAMARTILDEVLGVRPDFIEHQLAHSVRDPNGRAYNRTAHLPERRKMMQQWADYLDKLKAGAEIIPLH
GVA
>Mature_402_residues
ALTDTAIRNTKSADKPLKLTDERGLYLLLKPNGSRWWRFDYRYGGKRKTLSMGVYPDVSLKDARNRRDEARKLLASDVDP
GENRKAVKAAKLEKTTNSFEVITREWYAKFSPTWNESHGERIIRRFERDIFPWIGSKPISEIAAPELLATVRRIESRGAV
ETAHRALGNCGQVFRYAIATARATRDISADLRGALPPVKGEHFAAITEPKQVGALLRAIDGYTGSHVVRCALRLAPLVFV
RPGELRKAEWKDIDLDGGEWRYTVTKTNTPHIVPLSTQAVEILKELQALTGRSRFVFPGARTNGRPMSDNAILAALRRMG
IDKEEMSGHGFRAMARTILDEVLGVRPDFIEHQLAHSVRDPNGRAYNRTAHLPERRKMMQQWADYLDKLKAGAEIIPLHG
VA

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=395, Percent_Identity=37.9746835443038, Blast_Score=238, Evalue=4e-64,
Organism=Escherichia coli, GI1788690, Length=390, Percent_Identity=36.4102564102564, Blast_Score=234, Evalue=6e-63,
Organism=Escherichia coli, GI1788974, Length=399, Percent_Identity=36.0902255639098, Blast_Score=234, Evalue=7e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45425; Mature: 45293

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALTDTAIRNTKSADKPLKLTDERGLYLLLKPNGSRWWRFDYRYGGKRKTLSMGVYPDVS
CCCCCHHHHCCCCCCCCCEEECCCCEEEEEECCCCCEEEEEEEECCCCEEEEECCCCCCC
LKDARNRRDEARKLLASDVDPGENRKAVKAAKLEKTTNSFEVITREWYAKFSPTWNESHG
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHH
ERIIRRFERDIFPWIGSKPISEIAAPELLATVRRIESRGAVETAHRALGNCGQVFRYAIA
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
TARATRDISADLRGALPPVKGEHFAAITEPKQVGALLRAIDGYTGSHVVRCALRLAPLVF
HHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHCEEE
VRPGELRKAEWKDIDLDGGEWRYTVTKTNTPHIVPLSTQAVEILKELQALTGRSRFVFPG
ECCCCCCCCCCCEECCCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHHHHCCCEEEECC
ARTNGRPMSDNAILAALRRMGIDKEEMSGHGFRAMARTILDEVLGVRPDFIEHQLAHSVR
CCCCCCCCCCHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
DPNGRAYNRTAHLPERRKMMQQWADYLDKLKAGAEIIPLHGVA
CCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCC
>Mature Secondary Structure 
ALTDTAIRNTKSADKPLKLTDERGLYLLLKPNGSRWWRFDYRYGGKRKTLSMGVYPDVS
CCCCHHHHCCCCCCCCCEEECCCCEEEEEECCCCCEEEEEEEECCCCEEEEECCCCCCC
LKDARNRRDEARKLLASDVDPGENRKAVKAAKLEKTTNSFEVITREWYAKFSPTWNESHG
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHH
ERIIRRFERDIFPWIGSKPISEIAAPELLATVRRIESRGAVETAHRALGNCGQVFRYAIA
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
TARATRDISADLRGALPPVKGEHFAAITEPKQVGALLRAIDGYTGSHVVRCALRLAPLVF
HHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHCEEE
VRPGELRKAEWKDIDLDGGEWRYTVTKTNTPHIVPLSTQAVEILKELQALTGRSRFVFPG
ECCCCCCCCCCCEECCCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHHHHCCCEEEECC
ARTNGRPMSDNAILAALRRMGIDKEEMSGHGFRAMARTILDEVLGVRPDFIEHQLAHSVR
CCCCCCCCCCHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
DPNGRAYNRTAHLPERRKMMQQWADYLDKLKAGAEIIPLHGVA
CCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]