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The map label for this gene is yagA [C]

Identifier: 82703142

GI number: 82703142

Start: 2318130

End: 2318951

Strand: Reverse

Name: yagA [C]

Synonym: Nmul_A2021

Alternate gene names: 82703142

Gene position: 2318951-2318130 (Counterclockwise)

Preceding gene: 82703143

Following gene: 82703136

Centisome position: 72.83

GC content: 54.01

Gene sequence:

>822_bases
ATGGTAACCCCGGCAGCCAGACGCGAAGCGCTTGGAATTTTGACGGGCAAGGGGTTATCGCAGCGATCAGCGTGTCGAAT
TGTCGGGGTAAGCCGTCGTATTGGCAGTTATGAGGTCAAGCAGCCCGTTAAGGATCGTGCTGTTGCCACACGGATAATTG
AAGCATCAAGCCGCTATCCCCGTTTTGGGTATCGGCGCATTGCTGTCATGACTGATCAGAGTATGGGGCGTGTGTGGCGC
TTGTGGGGTAAGCTGGGACTAAGCTTGCCCAGGCGCAGGCCCAGGAAACGCCGCTGCGGGACGGATATACGCCTTCCTGG
AGCAACAAAACCAAACAGTGTCTGGACTTATGATTTCGTCCATGACCGGCTGGCCAATGGGCAGACGCTAAAGCTGCTTT
GCGTGCTGGATGAGCATACGCGTGAGTGCCTTGCAATCGAAGTCGGCAAATCGCTGCGTAACCAGGATGTCATCCTGACC
CTGTCACGGCTGATGCGTATCTATGGAAAGCCTGCCTTTATTCGCTCGGACAATGGCGCTGAATTTACTGCAACCGCAGT
AATGACATGGCTGCGAGACAATAACGTGGGGCCAGCCTTTATCAAGCCTGGCAGCCCTTGGCAGAATGGATTCGTGGAAA
GCTTCAACGGTAAATTGCGTGATGAATGCCTCAACCGCGAATGGTTCATCACACGGCAGGAAGCGAAAGTATTGATCGAG
AAATGGCGGCAGTTTTATAACAACGAGCGCCCGCATTCTGCGCTCGCCAACCGAACTCCAGCCCAGGCAGGCTTGCAAAG
GTTGCAAATCCAGAATGTTTGA

Upstream 100 bases:

>100_bases
GCCGGTTAAAGGATCTGGAGTCGGAGAATGCGAAGCTGAAGAAGATTGTTGCTGAGCAGATGCTGGCTATCGAGGGTTTG
AAGGAGATTGCCACAAAAAA

Downstream 100 bases:

>100_bases
ACCGGAAGACCCACTTCGAAACTGGCTACAAAAATCAATAGCAGGTCAGGGTAACTCTCAAAGCTGAAAACGAGAAGCTG
CTCGTTTACCTGGGCATTCC

Product: integrase catalytic subunit

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MVTPAARREALGILTGKGLSQRSACRIVGVSRRIGSYEVKQPVKDRAVATRIIEASSRYPRFGYRRIAVMTDQSMGRVWR
LWGKLGLSLPRRRPRKRRCGTDIRLPGATKPNSVWTYDFVHDRLANGQTLKLLCVLDEHTRECLAIEVGKSLRNQDVILT
LSRLMRIYGKPAFIRSDNGAEFTATAVMTWLRDNNVGPAFIKPGSPWQNGFVESFNGKLRDECLNREWFITRQEAKVLIE
KWRQFYNNERPHSALANRTPAQAGLQRLQIQNV

Sequences:

>Translated_273_residues
MVTPAARREALGILTGKGLSQRSACRIVGVSRRIGSYEVKQPVKDRAVATRIIEASSRYPRFGYRRIAVMTDQSMGRVWR
LWGKLGLSLPRRRPRKRRCGTDIRLPGATKPNSVWTYDFVHDRLANGQTLKLLCVLDEHTRECLAIEVGKSLRNQDVILT
LSRLMRIYGKPAFIRSDNGAEFTATAVMTWLRDNNVGPAFIKPGSPWQNGFVESFNGKLRDECLNREWFITRQEAKVLIE
KWRQFYNNERPHSALANRTPAQAGLQRLQIQNV
>Mature_273_residues
MVTPAARREALGILTGKGLSQRSACRIVGVSRRIGSYEVKQPVKDRAVATRIIEASSRYPRFGYRRIAVMTDQSMGRVWR
LWGKLGLSLPRRRPRKRRCGTDIRLPGATKPNSVWTYDFVHDRLANGQTLKLLCVLDEHTRECLAIEVGKSLRNQDVILT
LSRLMRIYGKPAFIRSDNGAEFTATAVMTWLRDNNVGPAFIKPGSPWQNGFVESFNGKLRDECLNREWFITRQEAKVLIE
KWRQFYNNERPHSALANRTPAQAGLQRLQIQNV

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=297, Percent_Identity=25.5892255892256, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 31222; Mature: 31222

Theoretical pI: Translated: 11.43; Mature: 11.43

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTPAARREALGILTGKGLSQRSACRIVGVSRRIGSYEVKQPVKDRAVATRIIEASSRYP
CCCCHHHHHHHHEEECCCCCCCCCEEEEEHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCC
RFGYRRIAVMTDQSMGRVWRLWGKLGLSLPRRRPRKRRCGTDIRLPGATKPNSVWTYDFV
CCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCEECCCCCCCCCEEEHHHH
HDRLANGQTLKLLCVLDEHTRECLAIEVGKSLRNQDVILTLSRLMRIYGKPAFIRSDNGA
HHHHCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEECCCCC
EFTATAVMTWLRDNNVGPAFIKPGSPWQNGFVESFNGKLRDECLNREWFITRQEAKVLIE
CHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHCCHHHHHHCCCCEEEEHHHHHHHHH
KWRQFYNNERPHSALANRTPAQAGLQRLQIQNV
HHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MVTPAARREALGILTGKGLSQRSACRIVGVSRRIGSYEVKQPVKDRAVATRIIEASSRYP
CCCCHHHHHHHHEEECCCCCCCCCEEEEEHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCC
RFGYRRIAVMTDQSMGRVWRLWGKLGLSLPRRRPRKRRCGTDIRLPGATKPNSVWTYDFV
CCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCEECCCCCCCCCEEEHHHH
HDRLANGQTLKLLCVLDEHTRECLAIEVGKSLRNQDVILTLSRLMRIYGKPAFIRSDNGA
HHHHCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEECCCCC
EFTATAVMTWLRDNNVGPAFIKPGSPWQNGFVESFNGKLRDECLNREWFITRQEAKVLIE
CHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHCCHHHHHHCCCCEEEEHHHHHHHHH
KWRQFYNNERPHSALANRTPAQAGLQRLQIQNV
HHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]