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The map label for this gene is srpC [H]

Identifier: 82702850

GI number: 82702850

Start: 1970666

End: 1972102

Strand: Reverse

Name: srpC [H]

Synonym: Nmul_A1726

Alternate gene names: 82702850

Gene position: 1972102-1970666 (Counterclockwise)

Preceding gene: 82702851

Following gene: 82702849

Centisome position: 61.93

GC content: 44.68

Gene sequence:

>1437_bases
ATGACAATGAAAAATAAAACATTTCGGCTTATGGCCTTAGTCGTGCTGGGGCTGCTGTTGCAGGGTTGTATTCCTAAAGT
AGCAATCAAAAAAGCAGATGTGCCTCTTCCTGCTACTTTTGAACCGGACGTTTTTGAAACGACCAGTACGGCGACTGTCA
TGCGGAAGGATTTTTTCGATGACCCTGCCTTATCAGATTTGCTAGACATCGCTGTTGCTAATAATAAAGAAATTAATATC
ATGCTGCAGCGCATCACCATTGCACAAAATGAAATCCAGGCGCGTAGAGGCCAATATTTGATGCCATTGGTAGGTATTCG
TGCTGGCGCAGGCGGAGACAAAGTCGGCGAGTTTACGCGCTTCGGCGCTATCGAAGAGGAACTGCCATTAGCCGGCAAAC
ACTTTCCTACGTTTCTTGGCGATTTTCGATTTGAGCTATTTTCAACTTGGGAAGTAGATATATGGAAAAGATTGAGGAAT
GCGAGACAAGTGGCTGTGCTGGAGTACATGGCATCTAAAGAAGGTCAAAATTTTTTAGTGACCAACCTGGTCGCTGACGT
TGCTCATTCGTACTATGAATTGCTTGCCCTGGACAACCACCTTGAGATTTTAGAGCAAAATATCAGGATTCAGGAAAATG
CGTTGGAGATGGTTAAACAACTTCTGCTGTATGCAAGAACAACTGCACTTGCGGTCAAACGTTATGAAGCAGAAGTGGCA
AAAAACAAAAGCAACATATACAAAATTAAACAGGATATTACGGTTGTTGAAAACCGGATCAACTTCCTGTTAGGGAGAAC
GCCGCAGCCTATCCAGCGTGCTTCCAGTGGTTTTATGGAGCAAAACCCCAAAGTACTCATGACAGGTATTCCGTCGCAAT
TGCTACAAAACAGGCCTGATATTAGGCAAGCGGAGCTTGAGCTATCGGCAGCGGAATTAAACATAAAGGTGGCCAGGGCA
AATTTCTTTCCCACCTTTAACATAAACGCGGGGGTAGGGTTTGAAGCTTTCGCGGTTAAGTACCTGTTCAATACCCCACA
ATCATTGGCGGCCGCTGTTGCCGGAGAGCTAGTAGCTCCAGTGATCAATAGGTACGCTATCAGAGCCGAATATAAAAACG
CCAGTGCCAGGCAAATTCAGGCAGCTTATGAGTATGAGCAAAGTATTATCAATGCTTATGTGGAAGTGGCGAATCAAATT
TCAAACATCGATAAGCTCAAAAAAAACTATCAACTCAAGACAAGCCAGGTGGAAGCGCTTGTCCAATCAATTGATGTCGC
TAGCCAGCTATTCAAATCTGCTCGTACGGACTACCTGGATGTGCTGTTGACACAAAGGGATACCCTGGAGGCCAAACAAG
ATCTAATTGAAACGCAACAAAAGCAATTTGACGCAATGGTGGATCTTTATAGATCACTTGGTGGCGGTTGGCAGTAG

Upstream 100 bases:

>100_bases
CCAGGACTTTATTATATTTTTGCGAAAATGGCAGAGGGTAAAAAATTAATTCAAGGTGAAGACCTTGATCCTCTAGCCGA
AACTTATCACTACGGCCCGG

Downstream 100 bases:

>100_bases
CAGGATGAGAGGAAGGAGCGGTTCAAAAAAAGGCTCTGTTGCAAAAAATAAGAAGAGAGGCGCCCCATTGTATTTTTCAG
GACAGATCCGTAGATGAAAC

Product: RND efflux system outer membrane lipoprotein NodT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 477

Protein sequence:

>478_residues
MTMKNKTFRLMALVVLGLLLQGCIPKVAIKKADVPLPATFEPDVFETTSTATVMRKDFFDDPALSDLLDIAVANNKEINI
MLQRITIAQNEIQARRGQYLMPLVGIRAGAGGDKVGEFTRFGAIEEELPLAGKHFPTFLGDFRFELFSTWEVDIWKRLRN
ARQVAVLEYMASKEGQNFLVTNLVADVAHSYYELLALDNHLEILEQNIRIQENALEMVKQLLLYARTTALAVKRYEAEVA
KNKSNIYKIKQDITVVENRINFLLGRTPQPIQRASSGFMEQNPKVLMTGIPSQLLQNRPDIRQAELELSAAELNIKVARA
NFFPTFNINAGVGFEAFAVKYLFNTPQSLAAAVAGELVAPVINRYAIRAEYKNASARQIQAAYEYEQSIINAYVEVANQI
SNIDKLKKNYQLKTSQVEALVQSIDVASQLFKSARTDYLDVLLTQRDTLEAKQDLIETQQKQFDAMVDLYRSLGGGWQ

Sequences:

>Translated_478_residues
MTMKNKTFRLMALVVLGLLLQGCIPKVAIKKADVPLPATFEPDVFETTSTATVMRKDFFDDPALSDLLDIAVANNKEINI
MLQRITIAQNEIQARRGQYLMPLVGIRAGAGGDKVGEFTRFGAIEEELPLAGKHFPTFLGDFRFELFSTWEVDIWKRLRN
ARQVAVLEYMASKEGQNFLVTNLVADVAHSYYELLALDNHLEILEQNIRIQENALEMVKQLLLYARTTALAVKRYEAEVA
KNKSNIYKIKQDITVVENRINFLLGRTPQPIQRASSGFMEQNPKVLMTGIPSQLLQNRPDIRQAELELSAAELNIKVARA
NFFPTFNINAGVGFEAFAVKYLFNTPQSLAAAVAGELVAPVINRYAIRAEYKNASARQIQAAYEYEQSIINAYVEVANQI
SNIDKLKKNYQLKTSQVEALVQSIDVASQLFKSARTDYLDVLLTQRDTLEAKQDLIETQQKQFDAMVDLYRSLGGGWQ
>Mature_477_residues
TMKNKTFRLMALVVLGLLLQGCIPKVAIKKADVPLPATFEPDVFETTSTATVMRKDFFDDPALSDLLDIAVANNKEINIM
LQRITIAQNEIQARRGQYLMPLVGIRAGAGGDKVGEFTRFGAIEEELPLAGKHFPTFLGDFRFELFSTWEVDIWKRLRNA
RQVAVLEYMASKEGQNFLVTNLVADVAHSYYELLALDNHLEILEQNIRIQENALEMVKQLLLYARTTALAVKRYEAEVAK
NKSNIYKIKQDITVVENRINFLLGRTPQPIQRASSGFMEQNPKVLMTGIPSQLLQNRPDIRQAELELSAAELNIKVARAN
FFPTFNINAGVGFEAFAVKYLFNTPQSLAAAVAGELVAPVINRYAIRAEYKNASARQIQAAYEYEQSIINAYVEVANQIS
NIDKLKKNYQLKTSQVEALVQSIDVASQLFKSARTDYLDVLLTQRDTLEAKQDLIETQQKQFDAMVDLYRSLGGGWQ

Specific function: The outer membrane component of an organic solvent efflux pump. Involved in export of a number of low log POW compounds including hexane (log POW 3.5), toluene (log POW 2.5) and dimethylphthalate (log POW 2.3). The solvent resistance phenotype has been po

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=469, Percent_Identity=26.0127931769723, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI2367348, Length=340, Percent_Identity=23.2352941176471, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 53858; Mature: 53727

Theoretical pI: Translated: 6.83; Mature: 6.83

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMKNKTFRLMALVVLGLLLQGCIPKVAIKKADVPLPATFEPDVFETTSTATVMRKDFFD
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
DPALSDLLDIAVANNKEINIMLQRITIAQNEIQARRGQYLMPLVGIRAGAGGDKVGEFTR
CHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHCCCEEEHHHHEECCCCCCHHHHHHH
FGAIEEELPLAGKHFPTFLGDFRFELFSTWEVDIWKRLRNARQVAVLEYMASKEGQNFLV
HCCCHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
TNLVADVAHSYYELLALDNHLEILEQNIRIQENALEMVKQLLLYARTTALAVKRYEAEVA
HHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNKSNIYKIKQDITVVENRINFLLGRTPQPIQRASSGFMEQNPKVLMTGIPSQLLQNRPD
HCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHCCCCEEEECCCHHHHCCCCC
IRQAELELSAAELNIKVARANFFPTFNINAGVGFEAFAVKYLFNTPQSLAAAVAGELVAP
CHHHHHHEEHHHEEEEEEEECCCEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
VINRYAIRAEYKNASARQIQAAYEYEQSIINAYVEVANQISNIDKLKKNYQLKTSQVEAL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
VQSIDVASQLFKSARTDYLDVLLTQRDTLEAKQDLIETQQKQFDAMVDLYRSLGGGWQ
HHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TMKNKTFRLMALVVLGLLLQGCIPKVAIKKADVPLPATFEPDVFETTSTATVMRKDFFD
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
DPALSDLLDIAVANNKEINIMLQRITIAQNEIQARRGQYLMPLVGIRAGAGGDKVGEFTR
CHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHCCCEEEHHHHEECCCCCCHHHHHHH
FGAIEEELPLAGKHFPTFLGDFRFELFSTWEVDIWKRLRNARQVAVLEYMASKEGQNFLV
HCCCHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
TNLVADVAHSYYELLALDNHLEILEQNIRIQENALEMVKQLLLYARTTALAVKRYEAEVA
HHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNKSNIYKIKQDITVVENRINFLLGRTPQPIQRASSGFMEQNPKVLMTGIPSQLLQNRPD
HCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHCCCCEEEECCCHHHHCCCCC
IRQAELELSAAELNIKVARANFFPTFNINAGVGFEAFAVKYLFNTPQSLAAAVAGELVAP
CHHHHHHEEHHHEEEEEEEECCCEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
VINRYAIRAEYKNASARQIQAAYEYEQSIINAYVEVANQISNIDKLKKNYQLKTSQVEAL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
VQSIDVASQLFKSARTDYLDVLLTQRDTLEAKQDLIETQQKQFDAMVDLYRSLGGGWQ
HHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9417051; 9852029 [H]