Click here to switch to the map view.

The map label for this gene is yifB [H]

Identifier: 82546121

GI number: 82546121

Start: 3796795

End: 3798207

Strand: Reverse

Name: yifB [H]

Synonym: SBO_3777

Alternate gene names: 82546121

Gene position: 3798207-3796795 (Counterclockwise)

Preceding gene: 82546128

Following gene: 82546119

Centisome position: 84.03

GC content: 51.45

Gene sequence:

>1413_bases
ATGCACATAATGGTGACTCAAGGAGGGCTTATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGGAGTAAATGCGCC
CCCGATCACTGTTGAGGTACATATCAGTAAAGGTCTACCCGGCTTAACGAAGGTGGGCTTACCAGAAACAACGGTAAAAG
AAGCTCGCGATCGCGTGCGCAGCGCCATTATCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTGGCT
CCAGCTGATCTGCCAAAAGAAGGGGGACGATATGATTTACCTATCGCCATTGCGTTGCTGGCGGCCTCAGAACAGCTTAC
AGCCAATAAGTTAGATGAATATGGATTAGTCGGAGAACTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCCGGCGCAATCT
CCAGTACAACTGAAGCTATTAAGTCGGGCAGAAAAATTATCGTCGCGAAAGATAACGAAGATGAAGTGGGGCTAATTAAC
GGTGAAGGATGCCTGATAGCCGATCATCTGCAAGCTGTCTGTGCGTTTCTGGAAGGTAAGCACGCTCTCGAACGCCCGAA
ACCAACTGATGCAGTATCCCGGGCGCTACAACATGATCTCAGTGATGTTATCGGTCAGGAACAAGGAAAGCGAGGACTGG
AAATTACCGCCGCTGGCGGGCACAACCTTTTACTGATTGGGCCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATT
AATGGCCTGTTGCCAGATTTAAGCAATGAAGAGGCACTGGAGAGTGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGT
ACAAAAACAATGGCGGCAGCGCCCGTTCCGCTCACCTCATCACAGTGCATCGTTAACTGCGATGGTAGGCGGTGGCGCAA
TTCCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGTGCTTTTTCTTGATGAGTTACCTGAATTTGAAAGGCGTACA
CTGGATGCCTTGCGAGAGCCGATTGAATCCGGGCAGATCCATCTTTCACGCACGCGAGCAAAAATAACCTATCCAGCCCG
TTTCCAGCTTGTCGCGGCGATGAATCCCAGCCCTACCGGACATTATCAGGGAAACCATAACCGCTGCACACCAGAGCAAA
CGCTGCGTTATCTCAACCGACTCTCTGGTCCCTTTCTCGACCGCTTCGATCTCTCACTGGAGATCCCATTACCGCCTCCC
GGTATTTTGAGTAAAACGGTAGTGCCGGGAGAAAGCAGCGCCACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCA
ATTTAAGCGGCAGAATAAACTGAACGCCTGGCTGGATAGTCCGGAAATACGCCAATTCTGCAAACTTGAGAGCGAAGATG
CGATGTGGCTGGAAGAAACGCTGATCCATCTGGGGTTATCGATTCGTGCCTAG

Upstream 100 bases:

>100_bases
GCATCATTCCACCGCCAGAACAACTCAACTTCACTTGCACAAATAAACAGGAATCAGCCACTAAAATTCACGAATTAGCG
GGCTACAGCAGCGATATCTT

Downstream 100 bases:

>100_bases
CAGCGGTTATTGAAAGTTGCACGAACCATTGCTGATATTGATCAGTCTGACATTATCACACGTCAACATTTGCAGGAGGC
AGTTAGCTATCGAGCGATTG

Product: 2-component regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MHIMVTQGGLMSLSIVHTRAALGVNAPPITVEVHISKGLPGLTKVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLA
PADLPKEGGRYDLPIAIALLAASEQLTANKLDEYGLVGELALTGALRGVPGAISSTTEAIKSGRKIIVAKDNEDEVGLIN
GEGCLIADHLQAVCAFLEGKHALERPKPTDAVSRALQHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRI
NGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRT
LDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPP
GILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEETLIHLGLSIRA

Sequences:

>Translated_470_residues
MHIMVTQGGLMSLSIVHTRAALGVNAPPITVEVHISKGLPGLTKVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLA
PADLPKEGGRYDLPIAIALLAASEQLTANKLDEYGLVGELALTGALRGVPGAISSTTEAIKSGRKIIVAKDNEDEVGLIN
GEGCLIADHLQAVCAFLEGKHALERPKPTDAVSRALQHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRI
NGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRT
LDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPP
GILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEETLIHLGLSIRA
>Mature_470_residues
MHIMVTQGGLMSLSIVHTRAALGVNAPPITVEVHISKGLPGLTKVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLA
PADLPKEGGRYDLPIAIALLAASEQLTANKLDEYGLVGELALTGALRGVPGAISSTTEAIKSGRKIIVAKDNEDEVGLIN
GEGCLIADHLQAVCAFLEGKHALERPKPTDAVSRALQHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRI
NGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRT
LDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPP
GILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEETLIHLGLSIRA

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=460, Percent_Identity=99.1304347826087, Blast_Score=924, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR020568 [H]

Pfam domain/function: PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 50807; Mature: 50807

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIMVTQGGLMSLSIVHTRAALGVNAPPITVEVHISKGLPGLTKVGLPETTVKEARDRVR
CEEEEECCCCEEEEEEHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
SAIINSGYEYPAKKITINLAPADLPKEGGRYDLPIAIALLAASEQLTANKLDEYGLVGEL
HHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCHHHH
ALTGALRGVPGAISSTTEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHLQAVCAFLEGK
HHHHHHCCCCCCHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCEEHHHHHHHHHHHHCC
HALERPKPTDAVSRALQHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRI
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHH
NGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEI
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCE
SLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTG
EEECCCEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECEEEEECCCEEEEEEECCCCCCC
HYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRV
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHH
MAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEETLIHLGLSIRA
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCEECC
>Mature Secondary Structure
MHIMVTQGGLMSLSIVHTRAALGVNAPPITVEVHISKGLPGLTKVGLPETTVKEARDRVR
CEEEEECCCCEEEEEEHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
SAIINSGYEYPAKKITINLAPADLPKEGGRYDLPIAIALLAASEQLTANKLDEYGLVGEL
HHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCHHHH
ALTGALRGVPGAISSTTEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHLQAVCAFLEGK
HHHHHHCCCCCCHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCEEHHHHHHHHHHHHCC
HALERPKPTDAVSRALQHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRI
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHH
NGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEI
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCE
SLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTG
EEECCCEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECEEEEECCCEEEEEEECCCCCCC
HYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRV
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHH
MAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEETLIHLGLSIRA
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1995430; 1379743; 9278503 [H]