| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is yicP [H]
Identifier: 82546061
GI number: 82546061
Start: 3720328
End: 3722094
Strand: Reverse
Name: yicP [H]
Synonym: SBO_3704
Alternate gene names: 82546061
Gene position: 3722094-3720328 (Counterclockwise)
Preceding gene: 82546062
Following gene: 82546053
Centisome position: 82.35
GC content: 54.78
Gene sequence:
>1767_bases ATGAATAATTCCATTAACCATAAATTTCATCACATTAGCCGGGCTGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGA CGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGA TTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACGCTGATGCTCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCA ACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACGCCGGTCACCTTTGAAACCGCTAC CCTGCCGCGCGGCCTGACGACCGTTATTTGCGACCCTCATGAAATCGTCAACGTGATGGGAGAAGCCGGATTCGCCTGGT TTGCCCGCTGTGCCGAACAGGCAAGGCAAAACCAGTACTTACAGGTCAGCTCTTGCGTACCCGCCCTGGAAGGCTGCGAT GTTAACGGTGCCAGTTTTACCCTTGAACAGATGCTCGCCTGGCGGGACCATCCGCAGGTTACCGGCCTTGCAGAAATGAT GGACTACCCTGGCGTAATTAGCGGGCAGAATGCGCTGCTCGATAAACTGGATGCATTTCGCCACCTGACGCTGGACGGTC ACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGCTG GAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCGCAATCTCAACGCGCT GGCACCGTTGATCAACGAATTTAACAGCCCGCAATGCATGCTCTGTACCGATGACCGTAACCCGTGGGAGATCGCCCATG AAGGACACATCGATGCCTTAATTCGCCGCCTGATCGAACAACACAATGTGCCGCTGCATGTGGCATATCGCGTCGCCAGC TGGTCGACGGCGCGCCACTTTGGTCTGAATCACCTCGACTTACTGGCACCCGGCAAGCAGGCCGATATCGTCCTGTTGAG CGATGCGCGTAAGGTCACGGTGCAGCAGGTACTGGTGAAAGGCGAGCCGATTGATGCGCAAACCTTACAGGCGGAAGAGT CGGCGAGACTGGCACAATCCGCTCCGCCATATGGCAACACCATTGCCCGCCAGCCAGTTTCCGCCAGCGACTTTGCCCTG CAATTTACGCCCGGAAAACGCTATCGGGTCATTGACGTCATCCATAACGAATTGATTACGCACTCCCACTCCAGCGTCTA CAGCGAAAATGGTTTTGATCGCGATGATGTGTGCTTTATTGCCGTACTTGAGCGTTACGGGCAACGGCTGGCTCCGGCTT GTGGTTTGCTTGGCGGCTTTGGACTGAATGAAGGTGCGCTGGCTGCGACGGTCAGCCATGACAGCCATAATATTGTGGTG ATCGGTCGCAGTGCCGAAGAGATGGCGCTGGCGGTCTATCAGGTGATTCAGGATGGCGGCGGGCTGTGCGTGGTACGTAA CGGCCAGGTCCAAAGTCATCTGCCGTTGCCCATTGCCGGCCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAA TTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGTTTCTTTCTCTG CCAGTGATCCCCGCGCTCAAACTAACCAGTCAGGGGCTATTTGATGGCGAGAAGTTTGTCTTCACTACGCTGGAAGTCAC GGAATAA
Upstream 100 bases:
>100_bases TCACATTTCAATTGCACATTAATAGATATTCTTTAATAATCTCGCGACGTTTCTTTATGATAAATAATAATCAAATTGAT AAAATCAAAATGAGAAAAAT
Downstream 100 bases:
>100_bases TAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCG GCGGATTTTGCGTTCTTCCA
Product: cryptic adenine deaminase
Products: NA
Alternate protein names: Adenase; Adenine aminase [H]
Number of amino acids: Translated: 588; Mature: 588
Protein sequence:
>588_residues MNNSINHKFHHISRAEYQELLAVSRGDAVADYIIDNVSILDLINGGEISGPIVIKGRYIAGVGAEYADAPALQRIDARGA TAVPGFIDAHLHIESSMMTPVTFETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCD VNGASFTLEQMLAWRDHPQVTGLAEMMDYPGVISGQNALLDKLDAFRHLTLDGHCPGLGGKELNAYITAGIENCHESYQL EEGRRKLQLGMSLMIREGSAARNLNALAPLINEFNSPQCMLCTDDRNPWEIAHEGHIDALIRRLIEQHNVPLHVAYRVAS WSTARHFGLNHLDLLAPGKQADIVLLSDARKVTVQQVLVKGEPIDAQTLQAEESARLAQSAPPYGNTIARQPVSASDFAL QFTPGKRYRVIDVIHNELITHSHSSVYSENGFDRDDVCFIAVLERYGQRLAPACGLLGGFGLNEGALAATVSHDSHNIVV IGRSAEEMALAVYQVIQDGGGLCVVRNGQVQSHLPLPIAGLMSTDTAQSLAEQIDALKAAARECGPLPDEPFIQMAFLSL PVIPALKLTSQGLFDGEKFVFTTLEVTE
Sequences:
>Translated_588_residues MNNSINHKFHHISRAEYQELLAVSRGDAVADYIIDNVSILDLINGGEISGPIVIKGRYIAGVGAEYADAPALQRIDARGA TAVPGFIDAHLHIESSMMTPVTFETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCD VNGASFTLEQMLAWRDHPQVTGLAEMMDYPGVISGQNALLDKLDAFRHLTLDGHCPGLGGKELNAYITAGIENCHESYQL EEGRRKLQLGMSLMIREGSAARNLNALAPLINEFNSPQCMLCTDDRNPWEIAHEGHIDALIRRLIEQHNVPLHVAYRVAS WSTARHFGLNHLDLLAPGKQADIVLLSDARKVTVQQVLVKGEPIDAQTLQAEESARLAQSAPPYGNTIARQPVSASDFAL QFTPGKRYRVIDVIHNELITHSHSSVYSENGFDRDDVCFIAVLERYGQRLAPACGLLGGFGLNEGALAATVSHDSHNIVV IGRSAEEMALAVYQVIQDGGGLCVVRNGQVQSHLPLPIAGLMSTDTAQSLAEQIDALKAAARECGPLPDEPFIQMAFLSL PVIPALKLTSQGLFDGEKFVFTTLEVTE >Mature_588_residues MNNSINHKFHHISRAEYQELLAVSRGDAVADYIIDNVSILDLINGGEISGPIVIKGRYIAGVGAEYADAPALQRIDARGA TAVPGFIDAHLHIESSMMTPVTFETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCD VNGASFTLEQMLAWRDHPQVTGLAEMMDYPGVISGQNALLDKLDAFRHLTLDGHCPGLGGKELNAYITAGIENCHESYQL EEGRRKLQLGMSLMIREGSAARNLNALAPLINEFNSPQCMLCTDDRNPWEIAHEGHIDALIRRLIEQHNVPLHVAYRVAS WSTARHFGLNHLDLLAPGKQADIVLLSDARKVTVQQVLVKGEPIDAQTLQAEESARLAQSAPPYGNTIARQPVSASDFAL QFTPGKRYRVIDVIHNELITHSHSSVYSENGFDRDDVCFIAVLERYGQRLAPACGLLGGFGLNEGALAATVSHDSHNIVV IGRSAEEMALAVYQVIQDGGGLCVVRNGQVQSHLPLPIAGLMSTDTAQSLAEQIDALKAAARECGPLPDEPFIQMAFLSL PVIPALKLTSQGLFDGEKFVFTTLEVTE
Specific function: Unknown
COG id: COG1001
COG function: function code F; Adenine deaminase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the adenine deaminase family [H]
Homologues:
Organism=Escherichia coli, GI1790098, Length=588, Percent_Identity=99.1496598639456, Blast_Score=1201, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006679 - InterPro: IPR006680 - InterPro: IPR011059 [H]
Pfam domain/function: PF01979 Amidohydro_1 [H]
EC number: =3.5.4.2 [H]
Molecular weight: Translated: 63861; Mature: 63861
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNSINHKFHHISRAEYQELLAVSRGDAVADYIIDNVSILDLINGGEISGPIVIKGRYIA CCCCCCCHHHHCCHHHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCCCCCEEEEEEEEE GVGAEYADAPALQRIDARGATAVPGFIDAHLHIESSMMTPVTFETATLPRGLTTVICDPH ECCCCCCCCHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCEEEECCCCCCCCEEEEECHH EIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCDVNGASFTLEQMLAWRDHPQV HHHHHHHCCCHHHHHHHHHHHHCCCCEEEHHCCCHHCCCCCCCCHHHHHHHHHHCCCCCH TGLAEMMDYPGVISGQNALLDKLDAFRHLTLDGHCPGLGGKELNAYITAGIENCHESYQL HHHHHHHCCCCEECCCHHHHHHHHHHHEEEECCCCCCCCCCCEEEEEEECHHHHHHHHHH EEGRRKLQLGMSLMIREGSAARNLNALAPLINEFNSPQCMLCTDDRNPWEIAHEGHIDAL HHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEECCCCHHHH IRRLIEQHNVPLHVAYRVASWSTARHFGLNHLDLLAPGKQADIVLLSDARKVTVQQVLVK HHHHHHHCCCCEEEEEEEECCCHHHHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHC GEPIDAQTLQAEESARLAQSAPPYGNTIARQPVSASDFALQFTPGKRYRVIDVIHNELIT CCCCCHHHHCCHHHHHHHHCCCCCCCCHHCCCCCCCCEEEEECCCCCEEEHHHHHHHHHH HSHSSVYSENGFDRDDVCFIAVLERYGQRLAPACGLLGGFGLNEGALAATVSHDSHNIVV CCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEE IGRSAEEMALAVYQVIQDGGGLCVVRNGQVQSHLPLPIAGLMSTDTAQSLAEQIDALKAA EECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHH ARECGPLPDEPFIQMAFLSLPVIPALKLTSQGLFDGEKFVFTTLEVTE HHHCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEEEEEEECC >Mature Secondary Structure MNNSINHKFHHISRAEYQELLAVSRGDAVADYIIDNVSILDLINGGEISGPIVIKGRYIA CCCCCCCHHHHCCHHHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCCCCCEEEEEEEEE GVGAEYADAPALQRIDARGATAVPGFIDAHLHIESSMMTPVTFETATLPRGLTTVICDPH ECCCCCCCCHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCEEEECCCCCCCCEEEEECHH EIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCDVNGASFTLEQMLAWRDHPQV HHHHHHHCCCHHHHHHHHHHHHCCCCEEEHHCCCHHCCCCCCCCHHHHHHHHHHCCCCCH TGLAEMMDYPGVISGQNALLDKLDAFRHLTLDGHCPGLGGKELNAYITAGIENCHESYQL HHHHHHHCCCCEECCCHHHHHHHHHHHEEEECCCCCCCCCCCEEEEEEECHHHHHHHHHH EEGRRKLQLGMSLMIREGSAARNLNALAPLINEFNSPQCMLCTDDRNPWEIAHEGHIDAL HHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEECCCCHHHH IRRLIEQHNVPLHVAYRVASWSTARHFGLNHLDLLAPGKQADIVLLSDARKVTVQQVLVK HHHHHHHCCCCEEEEEEEECCCHHHHCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHC GEPIDAQTLQAEESARLAQSAPPYGNTIARQPVSASDFALQFTPGKRYRVIDVIHNELIT CCCCCHHHHCCHHHHHHHHCCCCCCCCHHCCCCCCCCEEEEECCCCCEEEHHHHHHHHHH HSHSSVYSENGFDRDDVCFIAVLERYGQRLAPACGLLGGFGLNEGALAATVSHDSHNIVV CCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEE IGRSAEEMALAVYQVIQDGGGLCVVRNGQVQSHLPLPIAGLMSTDTAQSLAEQIDALKAA EECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHH ARECGPLPDEPFIQMAFLSLPVIPALKLTSQGLFDGEKFVFTTLEVTE HHHCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA