Definition | Shigella boydii Sb227, complete genome. |
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Accession | NC_007613 |
Length | 4,519,823 |
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The map label for this gene is bax
Identifier: 82545941
GI number: 82545941
Start: 3585366
End: 3586190
Strand: Reverse
Name: bax
Synonym: SBO_3578
Alternate gene names: 82545941
Gene position: 3586190-3585366 (Counterclockwise)
Preceding gene: 82545944
Following gene: 82545936
Centisome position: 79.34
GC content: 47.52
Gene sequence:
>825_bases ATGATTTTGACTCCCATACGACGATATGGGGCGATGATTCTTATGTTACTCACTCTGGTGTTTTCGAGTGAGGTGTTAGC GAAGACGCACACAACAACAGCGAGTCAAAAGTCCCACTTAACTAAAGCTAGTAATAAACAGGTAAGCAGTAAACAAGAGT ATTCTCGCAATAGTGCAAAGAGTAGTTCACTTCCTGATTTGCGAAAATACCCTTCCGGAACACCAAGGAAAAAGGCGTTT CTCCGGACCGTAATGCCTTACATTACCAGCCAAAATGCAGCCATTACTGCAGAACGTAACTGGCTGATTTCAAAACAGTA TCAGGGCCAATGGTCACCTGCTGAGCGTGCGCGTCTGAAAGACATCGCCAAACGCTACAAGGTGAAGTGGTCTGGTAATA CGCGAAAAATCCCGTGGAATACCTTGCTTGAACGCGTAGACATTATCCCTACCAGTATGGTGGCGACGATGGCTGCAGCA GAAAGCGGTTGGGGAACGTCGAAGCTGGCGCGCAACAATAACAATCTGTTCGGCATGAAATGCATGAAAGGACGTTGTAC CAATGCGCCGGGTAAAGTGAAAGGGTACTCACAGTTTAGTTCTGTCAAAGAATCGGTGAGCGCCTATGTCACTAACCTGA ATACGCACCCGGCTTACTCTTCGTTCCGTAAATCGCGTGCGCAGCTGCGTAAAGCGGATCAGGAAGTGACTGCCACAGCG ATGATTCACAAGCTGAAGGGCTACTCGACCAAAGGGAAGAGTTATAATAACTACCTGTTCGCAATGTACCAGGATAACCA ACGGTTAATCGCGGCGCATATGTAA
Upstream 100 bases:
>100_bases GGTGCTCTTGACAGCTATTTTTGATATGATTTGAGATTCAACTCTCAAATTTGTGAAAAATATAAGGTGTTGGAATGATT AAATCCGACCAGGAGACCTG
Downstream 100 bases:
>100_bases TTGCATTTCCTTGAGCCTTATCTGATTTGTCGGTCGGATAAGGCTTTTGCTCGCATCAGGTGGCTGTGCTGAGTTCCCTG ATGTGACGCCGACAATTCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MILTPIRRYGAMILMLLTLVFSSEVLAKTHTTTASQKSHLTKASNKQVSSKQEYSRNSAKSSSLPDLRKYPSGTPRKKAF LRTVMPYITSQNAAITAERNWLISKQYQGQWSPAERARLKDIAKRYKVKWSGNTRKIPWNTLLERVDIIPTSMVATMAAA ESGWGTSKLARNNNNLFGMKCMKGRCTNAPGKVKGYSQFSSVKESVSAYVTNLNTHPAYSSFRKSRAQLRKADQEVTATA MIHKLKGYSTKGKSYNNYLFAMYQDNQRLIAAHM
Sequences:
>Translated_274_residues MILTPIRRYGAMILMLLTLVFSSEVLAKTHTTTASQKSHLTKASNKQVSSKQEYSRNSAKSSSLPDLRKYPSGTPRKKAF LRTVMPYITSQNAAITAERNWLISKQYQGQWSPAERARLKDIAKRYKVKWSGNTRKIPWNTLLERVDIIPTSMVATMAAA ESGWGTSKLARNNNNLFGMKCMKGRCTNAPGKVKGYSQFSSVKESVSAYVTNLNTHPAYSSFRKSRAQLRKADQEVTATA MIHKLKGYSTKGKSYNNYLFAMYQDNQRLIAAHM >Mature_274_residues MILTPIRRYGAMILMLLTLVFSSEVLAKTHTTTASQKSHLTKASNKQVSSKQEYSRNSAKSSSLPDLRKYPSGTPRKKAF LRTVMPYITSQNAAITAERNWLISKQYQGQWSPAERARLKDIAKRYKVKWSGNTRKIPWNTLLERVDIIPTSMVATMAAA ESGWGTSKLARNNNNLFGMKCMKGRCTNAPGKVKGYSQFSSVKESVSAYVTNLNTHPAYSSFRKSRAQLRKADQEVTATA MIHKLKGYSTKGKSYNNYLFAMYQDNQRLIAAHM
Specific function: Unknown
COG id: COG2992
COG function: function code R; Uncharacterized FlgJ-related protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI48994948, Length=274, Percent_Identity=100, Blast_Score=569, Evalue=1e-164,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): BAX_ECOLI (P27297)
Other databases:
- EMBL: U00039 - EMBL: U00096 - EMBL: AP009048 - EMBL: X58994 - PIR: S47791 - RefSeq: AP_004222.1 - RefSeq: YP_026230.1 - ProteinModelPortal: P27297 - SMR: P27297 - STRING: P27297 - EnsemblBacteria: EBESCT00000003380 - EnsemblBacteria: EBESCT00000014997 - GeneID: 948089 - GenomeReviews: AP009048_GR - GenomeReviews: U00096_GR - KEGG: ecj:JW5653 - KEGG: eco:b3570 - EchoBASE: EB1335 - EcoGene: EG11360 - eggNOG: COG2992 - GeneTree: EBGT00050000010219 - HOGENOM: HBG391621 - OMA: QAANETG - ProtClustDB: PRK10356 - BioCyc: EcoCyc:EG11360-MONOMER - Genevestigator: P27297 - InterPro: IPR002901
Pfam domain/function: PF01832 Glucosaminidase
EC number: NA
Molecular weight: Translated: 30868; Mature: 30868
Theoretical pI: Translated: 11.02; Mature: 11.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILTPIRRYGAMILMLLTLVFSSEVLAKTHTTTASQKSHLTKASNKQVSSKQEYSRNSAK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCC SSSLPDLRKYPSGTPRKKAFLRTVMPYITSQNAAITAERNWLISKQYQGQWSPAERARLK CCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCCCCCHHHHHHHH DIAKRYKVKWSGNTRKIPWNTLLERVDIIPTSMVATMAAAESGWGTSKLARNNNNLFGMK HHHHHHEEEECCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEE CMKGRCTNAPGKVKGYSQFSSVKESVSAYVTNLNTHPAYSSFRKSRAQLRKADQEVTATA ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH MIHKLKGYSTKGKSYNNYLFAMYQDNQRLIAAHM HHHHHHCCCCCCCCCCCEEEEEEECCCEEEEECC >Mature Secondary Structure MILTPIRRYGAMILMLLTLVFSSEVLAKTHTTTASQKSHLTKASNKQVSSKQEYSRNSAK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCC SSSLPDLRKYPSGTPRKKAFLRTVMPYITSQNAAITAERNWLISKQYQGQWSPAERARLK CCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCCCCCHHHHHHHH DIAKRYKVKWSGNTRKIPWNTLLERVDIIPTSMVATMAAAESGWGTSKLARNNNNLFGMK HHHHHHEEEECCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEE CMKGRCTNAPGKVKGYSQFSSVKESVSAYVTNLNTHPAYSSFRKSRAQLRKADQEVTATA ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH MIHKLKGYSTKGKSYNNYLFAMYQDNQRLIAAHM HHHHHHCCCCCCCCCCCEEEEEEECCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503; 1544897