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The map label for this gene is lpfA [H]

Identifier: 82545909

GI number: 82545909

Start: 3556159

End: 3556701

Strand: Reverse

Name: lpfA [H]

Synonym: SBO_3546

Alternate gene names: 82545909

Gene position: 3556701-3556159 (Counterclockwise)

Preceding gene: 82545910

Following gene: 161984834

Centisome position: 78.69

GC content: 48.99

Gene sequence:

>543_bases
ATGAAGCGAACAATACTTGCGTTATGCCTGCTGCCTCTTTCCTTTTCGTCATTCGCGGCAACCACGGATTTAGGGCCGAA
AGGAACATTGAAATTCACCCTTAAAATCAGCCAGGGTGCTTGCGAACTGGTGAAAGACAGCGTTGAGGTTGACATGGGCA
CCGCGGTTCTCAAAAAGCCGGTAAGAATCGGAACGGAAATTAATCCCACTCCTTTTTCCATCGGCCTGAAAAACTGTAGC
GAAGTGGTCAGAGCCTACGTGACTATGGACGGTACACCCAATGCAGACGACTCAAATCTTTTTGCGCTGGATGCGGGTGG
CGCTACAGGCGTTGGGCTGAAAATCAAAACCGCTGCTGGAGTACAACAGTTCCCGGAAAATACAACGCCGATACCGGTTG
AGTTTGCAATTAACGGTGATGGCGCACATCAACTGAACTATATCGCCAGCTACGTGCCTATTCGCGCCGATGCAACTATT
GGTCGCGCAGATGCAACGGTCGACTTTACTGTACAGTACAGTACGAATAATTTCACATCTTAA

Upstream 100 bases:

>100_bases
GGCAGCATTACCCTTATCCCGTTAGCACTACCGGAAAATTACCCGCTGCCGGGGATTATAGCGGTATTGCTACCATACAT
GTCGAACTGGAGTAACAGTC

Downstream 100 bases:

>100_bases
GGGCCAGTTAACTGGCCCTTTTTACTGCTTTTTGTAACGCTAAAGTCTCTTTTCAAACTTGCATTTTTGTAAATTTGTGC
TTCATGCACACTCTTTCCCC

Product: major fimbrial subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MKRTILALCLLPLSFSSFAATTDLGPKGTLKFTLKISQGACELVKDSVEVDMGTAVLKKPVRIGTEINPTPFSIGLKNCS
EVVRAYVTMDGTPNADDSNLFALDAGGATGVGLKIKTAAGVQQFPENTTPIPVEFAINGDGAHQLNYIASYVPIRADATI
GRADATVDFTVQYSTNNFTS

Sequences:

>Translated_180_residues
MKRTILALCLLPLSFSSFAATTDLGPKGTLKFTLKISQGACELVKDSVEVDMGTAVLKKPVRIGTEINPTPFSIGLKNCS
EVVRAYVTMDGTPNADDSNLFALDAGGATGVGLKIKTAAGVQQFPENTTPIPVEFAINGDGAHQLNYIASYVPIRADATI
GRADATVDFTVQYSTNNFTS
>Mature_180_residues
MKRTILALCLLPLSFSSFAATTDLGPKGTLKFTLKISQGACELVKDSVEVDMGTAVLKKPVRIGTEINPTPFSIGLKNCS
EVVRAYVTMDGTPNADDSNLFALDAGGATGVGLKIKTAAGVQQFPENTTPIPVEFAINGDGAHQLNYIASYVPIRADATI
GRADATVDFTVQYSTNNFTS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18993; Mature: 18993

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTILALCLLPLSFSSFAATTDLGPKGTLKFTLKISQGACELVKDSVEVDMGTAVLKKP
CCHHHEEHHHHHCCCCHHEEECCCCCCCEEEEEEEECCCHHHHHHHHHCCCCCHHHHHCC
VRIGTEINPTPFSIGLKNCSEVVRAYVTMDGTPNADDSNLFALDAGGATGVGLKIKTAAG
HHCCCCCCCCCEEECHHHHHHHHHEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEECCC
VQQFPENTTPIPVEFAINGDGAHQLNYIASYVPIRADATIGRADATVDFTVQYSTNNFTS
HHHCCCCCCCCEEEEEECCCCCHHHHHHHHCCEEECCCCCCCCCCEEEEEEEECCCCCCC
>Mature Secondary Structure
MKRTILALCLLPLSFSSFAATTDLGPKGTLKFTLKISQGACELVKDSVEVDMGTAVLKKP
CCHHHEEHHHHHCCCCHHEEECCCCCCCEEEEEEEECCCHHHHHHHHHCCCCCHHHHHCC
VRIGTEINPTPFSIGLKNCSEVVRAYVTMDGTPNADDSNLFALDAGGATGVGLKIKTAAG
HHCCCCCCCCCEEECHHHHHHHHHEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEECCC
VQQFPENTTPIPVEFAINGDGAHQLNYIASYVPIRADATIGRADATVDFTVQYSTNNFTS
HHHCCCCCCCCEEEEEECCCCCHHHHHHHHCCEEECCCCCCCCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]