Definition | Shigella boydii Sb227, complete genome. |
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Accession | NC_007613 |
Length | 4,519,823 |
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The map label for this gene is cysW
Identifier: 82544883
GI number: 82544883
Start: 2439153
End: 2440028
Strand: Reverse
Name: cysW
Synonym: SBO_2448
Alternate gene names: 82544883
Gene position: 2440028-2439153 (Counterclockwise)
Preceding gene: 82544884
Following gene: 82544882
Centisome position: 53.99
GC content: 55.94
Gene sequence:
>876_bases ATGGCGGAAGTTACCCAATTGAAGCGTTATGACGCGCGCCCGATTAACTGGGGCAAATGGTTTCTGATTGGCATCGGGAT GCTGGTATCGGCGTTCATCCTGCTGGTGCCGATGATTTATATCTTCGTACAGGCGTTCAGCAAAGGGCTGATGCCGGTTT TACAGAATCTGGCCGATCCGGACATGCTGCACGCCATTTGGCTGACGGTGATGATTGCGCTGATTGCCGTACCGGTGAAC CTGGTGTTCGGCATTCTGCTGGCGTGGCTGGTAACGCGCTTTAACTTCCCCGGACGCCAGTTACTGCTGACGCTACTGGA CATTCCGTTTGCCGTATCGCCGGTAGTTGCCGGTCTGGTGTATCTGCTGTTCTACGGCTCTAACGGTCCGCTGGGCGGCT GGCTGGATGAACATAATTTGCAGATTATGTTCTCCTGGCCGGGAATGGTGCTGGTCACCATCTTTGTGACCTGTCCTTTT GTGGTGCGCGAGCTGGTGCCGGTGATGTTAAGCCAGGGCAGCCAGGAAGACGAAGCGGCGATTTTGCTTGGCGCGTCTGG CTGGCAGATGTTCCGTCGCGTCACATTGCCGAACATTCGCTGGGCGCTGCTGTATGGTGTGGTGCTAACCAACGCCCGCG CGATTGGCGAGTTTGGTGCGGTGTCGGTGGTTTCCGGCTCGATTCGCGGCGAAACACTTTCGCTGCCGTTACAGATTGAA TTGCTGGAGCAGGACTACAACACCGTCGGCTCCTTTACCGCCGCCGCGCTGTTGACGCTGATGGCGATTATCACCCTGTT TTTAAAGAGTATGTTGCAGTGGCGTCTGGAGAATCAGGAAAAACGCGCGCAGCAGGAGGAGCATCATGAGCATTGA
Upstream 100 bases:
>100_bases CGAGCGCGATTGCTTCGGTGATCCTCGCGGCATCCCTGCTGCTGCTGTTCTCAATTAACACTCTGCAAAGTCGCTTTGGT CGGCGTGTGGTAGGTCATTA
Downstream 100 bases:
>100_bases GATTGCCAATATTAAGAAGTCGTTTGGTCGCACCCAGGTGCTGAACGATATCTCACTGGATATTCCTTCTGGTCAGATGG TCGCGCTGCTGGGGCCGTCC
Product: sulfate/thiosulfate transporter permease subunit
Products: ADP; phosphate; S2O32- [Cytoplasm]; SO42- [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MAEVTQLKRYDARPINWGKWFLIGIGMLVSAFILLVPMIYIFVQAFSKGLMPVLQNLADPDMLHAIWLTVMIALIAVPVN LVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQIMFSWPGMVLVTIFVTCPF VVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIE LLEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRLENQEKRAQQEEHHEH
Sequences:
>Translated_291_residues MAEVTQLKRYDARPINWGKWFLIGIGMLVSAFILLVPMIYIFVQAFSKGLMPVLQNLADPDMLHAIWLTVMIALIAVPVN LVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQIMFSWPGMVLVTIFVTCPF VVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIE LLEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRLENQEKRAQQEEHHEH >Mature_290_residues AEVTQLKRYDARPINWGKWFLIGIGMLVSAFILLVPMIYIFVQAFSKGLMPVLQNLADPDMLHAIWLTVMIALIAVPVNL VFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQIMFSWPGMVLVTIFVTCPFV VRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIEL LEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRLENQEKRAQQEEHHEH
Specific function: Part of the ABC transporter complex CysAWTP (TC 3.A.1.6.1) involved in sulfate/thiosulfate import. Probably responsible for the translocation of the substrate across the membrane
COG id: COG4208
COG function: function code P; ABC-type sulfate transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain
Homologues:
Organism=Escherichia coli, GI87082099, Length=291, Percent_Identity=100, Blast_Score=584, Evalue=1e-168, Organism=Escherichia coli, GI1788764, Length=192, Percent_Identity=40.625, Blast_Score=149, Evalue=2e-37, Organism=Escherichia coli, GI1786980, Length=232, Percent_Identity=34.4827586206897, Blast_Score=95, Evalue=5e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): CYSW_ECOL6 (P0AEB1)
Other databases:
- EMBL: AE014075 - RefSeq: NP_754839.1 - ProteinModelPortal: P0AEB1 - SMR: P0AEB1 - EnsemblBacteria: EBESCT00000041609 - GeneID: 1038593 - GenomeReviews: AE014075_GR - KEGG: ecc:c2957 - GeneTree: EBGT00050000008926 - HOGENOM: HBG685300 - OMA: LQIELLY - ProtClustDB: PRK11602 - InterPro: IPR000515 - InterPro: IPR011866 - InterPro: IPR005667 - TIGRFAMs: TIGR00969 - TIGRFAMs: TIGR02140
Pfam domain/function: PF00528 BPD_transp_1
EC number: NA
Molecular weight: Translated: 32538; Mature: 32407
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0x1ae61de4)-; HASH(0x1adeb7f4)-; HASH(0x17da9e54)-; HASH(0x1adfa2b0)-; HASH(0x1a8f6c50)-; HASH(0x1aa3d9ac)-;
Cys/Met content:
0.3 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEVTQLKRYDARPINWGKWFLIGIGMLVSAFILLVPMIYIFVQAFSKGLMPVLQNLADP CCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH DMLHAIWLTVMIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHH YLLFYGSNGPLGGWLDEHNLQIMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAA HHHHCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE ILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIE EEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEECCEEHH LLEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRLENQEKRAQQEEHHEH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCH >Mature Secondary Structure AEVTQLKRYDARPINWGKWFLIGIGMLVSAFILLVPMIYIFVQAFSKGLMPVLQNLADP CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH DMLHAIWLTVMIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHH YLLFYGSNGPLGGWLDEHNLQIMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAA HHHHCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE ILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIE EEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEECCEEHH LLEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRLENQEKRAQQEEHHEH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCH
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; S2O32- [Periplasm]; H2O; SO42- [Periplasm]; ATP [C]
Specific reaction: ATP + S2O32- [Periplasm] + H2O = ADP + phosphate + S2O32- [Cytoplasm] SO42- [Periplasm] + H2O + ATP = SO42- [Cytoplasm] + phosphate + ADP [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12471157