Definition | Shigella boydii Sb227, complete genome. |
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Accession | NC_007613 |
Length | 4,519,823 |
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The map label for this gene is ybdZ [H]
Identifier: 82543031
GI number: 82543031
Start: 462420
End: 462638
Strand: Direct
Name: ybdZ [H]
Synonym: SBO_0446
Alternate gene names: 82543031
Gene position: 462420-462638 (Clockwise)
Preceding gene: 82543030
Following gene: 82543032
Centisome position: 10.23
GC content: 55.71
Gene sequence:
>219_bases ATGGCATTCAGTAATCCCTTCGATGATCCACAGGGAGCGTTTTACATTTTGCGCAATGCGCAGGGGCAATTCAGTCTGTG GCCGCAACAATGCGCCTTACCGGCAGGCTGGGACATTGTGTGTCAGCCGCAGTCACAAGAGTCCTGCCAGCAGTGGCTTG AAGCCCACTGGCGTACTCTGACACCGGCGAATTTCACCCAGTTGCAGGAGGCGCAATGA
Upstream 100 bases:
>100_bases GCCAGGTTGACGGCGGACATGATGCGCTTTGTTGGCGCGGTGGCTTGATGCAGGGGCTAATCGACCTCTGGCAACCACTT TTCCATGACAGGAGTTGAAT
Downstream 100 bases:
>100_bases GCCAGCATTTACCTTTGGTCGCCGCACAGCCCGGCATCTGGATGGCAGAAAAACTGTCGGATTTACCCTCCGCCTGGAGC GTAGCGCATTACGTTGAGTT
Product: cytoplasmic protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 72; Mature: 71
Protein sequence:
>72_residues MAFSNPFDDPQGAFYILRNAQGQFSLWPQQCALPAGWDIVCQPQSQESCQQWLEAHWRTLTPANFTQLQEAQ
Sequences:
>Translated_72_residues MAFSNPFDDPQGAFYILRNAQGQFSLWPQQCALPAGWDIVCQPQSQESCQQWLEAHWRTLTPANFTQLQEAQ >Mature_71_residues AFSNPFDDPQGAFYILRNAQGQFSLWPQQCALPAGWDIVCQPQSQESCQQWLEAHWRTLTPANFTQLQEAQ
Specific function: Could be involved in enterobactin synthesis [H]
COG id: COG3251
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To M.tuberculosis mbtH [H]
Homologues:
Organism=Escherichia coli, GI87081760, Length=72, Percent_Identity=95.8333333333333, Blast_Score=143, Evalue=2e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015166 - InterPro: IPR005153 [H]
Pfam domain/function: PF03621 MbtH [H]
EC number: NA
Molecular weight: Translated: 8271; Mature: 8140
Theoretical pI: Translated: 4.07; Mature: 4.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 4.2 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFSNPFDDPQGAFYILRNAQGQFSLWPQQCALPAGWDIVCQPQSQESCQQWLEAHWRTL CCCCCCCCCCCCEEEEEECCCCCCEECHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCC TPANFTQLQEAQ CCCCCCCCCCCC >Mature Secondary Structure AFSNPFDDPQGAFYILRNAQGQFSLWPQQCALPAGWDIVCQPQSQESCQQWLEAHWRTL CCCCCCCCCCCEEEEEECCCCCCEECHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCC TPANFTQLQEAQ CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2974033; 1826089; 9278503 [H]