Click here to switch to the map view.

The map label for this gene is yggW [C]

Identifier: 78779792

GI number: 78779792

Start: 1324406

End: 1325629

Strand: Reverse

Name: yggW [C]

Synonym: PMT9312_1408

Alternate gene names: 78779792

Gene position: 1325629-1324406 (Counterclockwise)

Preceding gene: 78779800

Following gene: 78779791

Centisome position: 77.56

GC content: 32.43

Gene sequence:

>1224_bases
ATGAATAAGTTTCCAAGAAGTGCTTATGTGCACATTCCTTTTTGCCATAGAAGGTGCTTTTACTGTGATTTTGCAGTTAT
TCCACTAGGAAATAAAGTTGAAACTTTACATGGTTATGGAAGTAAAACTGTTAAAGAATATTTGCACTATTTATCCAAAG
AAATATTGTCAATTAAGCATAAATCACCTCTTTCGACAATTTATGTTGGTGGCGGCACACCATCAATCTTGGATCCCCAA
CAAATTAAAGAGTTAATTGATCTTTTTAAAGAAAATTATGGAGTTGACTATGGTGCTGAAATTACTATGGAGGTTGATCC
AGCTAGTTTTAATGAAGATGATCTTTATGGATTCATAAATGCTGGGATAAGTAGATTTAGTCTCGGAGTGCAAAGTTTTA
ATAATCAGATCCTTCAAAATTCTGGCAGGAGGCATTTGAGAGAAGATGCTGAAAAATCTTGTTTATGGTTGAAGAGAGTA
TTTGATAATGGGCTAATAAAAAGCTGGAGCTTAGATTTAATTCAAAACTTGCCACTAAGTGGATTTAAAGAATGGCAAGA
TGACTTAAATAAAGCAATAACGTTTTTACCACCTCATATTTCCATTTACGATTTAAATATTGAAAATGGAACTGTTTTTA
AAAAATTAGTTAATTTAGGAAAATTAGAAGTTCCAAGTGATGAAGAGGCTTTTAGAAATAGTGAAGTAACACATGTAATT
TTAAAAAACTCAGGGTACTCAAGATATGAAATCTCAAACTATTGTCTTCCGAGGCATCAATCGAGACATAATAGAGTTTA
TTGGAGTGGTTCAGGCTGGTGGAGTTTTGGTCAAGGTTCCACTAGTTCACCTTGGGGGGAAAAGTTAACTAGACCAAGAG
TTAGTAAAGAATATAAAGAATGGGTAATTAGGCAATACGAACTTAATTTAGATTCATCCCTCACTAATAAGGATTTTGTC
TATAAAGAACTTGATGAGAAAATAATGTTGGGAATGAGACTTAAAGAGGGTATAGATATCTATGAGGTGTTTAAAGAACA
AAACTGGGAAAATAAAAAATTTGAAAGTAACTTGAGTAAATTACTTGAAGAATGGGAAAGATTTCTTGAAAGTGGACTAT
TAGTTAGAAAGGGGAATAGATTCTTTTTAAGTGAACCTAAAGGGATGGAGCTAAGCAATCAAATTCTTATTTCCATGTTT
AAGTGGTGGGATGAGATTAATTAA

Upstream 100 bases:

>100_bases
ATATCTATAATCTACTAGGATTTATTAATTGAGTAAATAAGGATTTTATTTTTTTCGATCCTTAATACTTTTTTTTGGAG
CTTAAAAATGTATTTAGATT

Downstream 100 bases:

>100_bases
GACTAATCATACCCTCTTTGTCATAGCTAAAACCATTGCCATCACTAGTTCTAAGAGAATTCTAGATAATAAAATAAATT
CCTTCGAAAACTTCTTTGAC

Product: putative oxygen-independent coproporphyrinogen III oxidase

Products: Protoporphyrinogen IX; CO2; H2O

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MNKFPRSAYVHIPFCHRRCFYCDFAVIPLGNKVETLHGYGSKTVKEYLHYLSKEILSIKHKSPLSTIYVGGGTPSILDPQ
QIKELIDLFKENYGVDYGAEITMEVDPASFNEDDLYGFINAGISRFSLGVQSFNNQILQNSGRRHLREDAEKSCLWLKRV
FDNGLIKSWSLDLIQNLPLSGFKEWQDDLNKAITFLPPHISIYDLNIENGTVFKKLVNLGKLEVPSDEEAFRNSEVTHVI
LKNSGYSRYEISNYCLPRHQSRHNRVYWSGSGWWSFGQGSTSSPWGEKLTRPRVSKEYKEWVIRQYELNLDSSLTNKDFV
YKELDEKIMLGMRLKEGIDIYEVFKEQNWENKKFESNLSKLLEEWERFLESGLLVRKGNRFFLSEPKGMELSNQILISMF
KWWDEIN

Sequences:

>Translated_407_residues
MNKFPRSAYVHIPFCHRRCFYCDFAVIPLGNKVETLHGYGSKTVKEYLHYLSKEILSIKHKSPLSTIYVGGGTPSILDPQ
QIKELIDLFKENYGVDYGAEITMEVDPASFNEDDLYGFINAGISRFSLGVQSFNNQILQNSGRRHLREDAEKSCLWLKRV
FDNGLIKSWSLDLIQNLPLSGFKEWQDDLNKAITFLPPHISIYDLNIENGTVFKKLVNLGKLEVPSDEEAFRNSEVTHVI
LKNSGYSRYEISNYCLPRHQSRHNRVYWSGSGWWSFGQGSTSSPWGEKLTRPRVSKEYKEWVIRQYELNLDSSLTNKDFV
YKELDEKIMLGMRLKEGIDIYEVFKEQNWENKKFESNLSKLLEEWERFLESGLLVRKGNRFFLSEPKGMELSNQILISMF
KWWDEIN
>Mature_407_residues
MNKFPRSAYVHIPFCHRRCFYCDFAVIPLGNKVETLHGYGSKTVKEYLHYLSKEILSIKHKSPLSTIYVGGGTPSILDPQ
QIKELIDLFKENYGVDYGAEITMEVDPASFNEDDLYGFINAGISRFSLGVQSFNNQILQNSGRRHLREDAEKSCLWLKRV
FDNGLIKSWSLDLIQNLPLSGFKEWQDDLNKAITFLPPHISIYDLNIENGTVFKKLVNLGKLEVPSDEEAFRNSEVTHVI
LKNSGYSRYEISNYCLPRHQSRHNRVYWSGSGWWSFGQGSTSSPWGEKLTRPRVSKEYKEWVIRQYELNLDSSLTNKDFV
YKELDEKIMLGMRLKEGIDIYEVFKEQNWENKKFESNLSKLLEEWERFLESGLLVRKGNRFFLSEPKGMELSNQILISMF
KWWDEIN

Specific function: Unknown

COG id: COG0635

COG function: function code H; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anaerobic coproporphyrinogen-III oxidase family [H]

Homologues:

Organism=Homo sapiens, GI8922911, Length=273, Percent_Identity=28.2051282051282, Blast_Score=134, Evalue=2e-31,
Organism=Escherichia coli, GI1789325, Length=323, Percent_Identity=32.5077399380805, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI87082341, Length=259, Percent_Identity=29.7297297297297, Blast_Score=108, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR004559
- InterPro:   IPR010723
- InterPro:   IPR007197 [H]

Pfam domain/function: PF06969 HemN_C; PF04055 Radical_SAM [H]

EC number: 1.3.3.3

Molecular weight: Translated: 47542; Mature: 47542

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKFPRSAYVHIPFCHRRCFYCDFAVIPLGNKVETLHGYGSKTVKEYLHYLSKEILSIKH
CCCCCCCCEEEEEHHHCEEEEEEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHC
KSPLSTIYVGGGTPSILDPQQIKELIDLFKENYGVDYGAEITMEVDPASFNEDDLYGFIN
CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHH
AGISRFSLGVQSFNNQILQNSGRRHLREDAEKSCLWLKRVFDNGLIKSWSLDLIQNLPLS
HCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
GFKEWQDDLNKAITFLPPHISIYDLNIENGTVFKKLVNLGKLEVPSDEEAFRNSEVTHVI
CHHHHHHHHHHHEEECCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCHHHHCCCCEEEEE
LKNSGYSRYEISNYCLPRHQSRHNRVYWSGSGWWSFGQGSTSSPWGEKLTRPRVSKEYKE
EECCCCCEEECCCCCCCCCCCCCCEEEECCCCCEECCCCCCCCCCHHHHCCCHHHHHHHH
WVIRQYELNLDSSLTNKDFVYKELDEKIMLGMRLKEGIDIYEVFKEQNWENKKFESNLSK
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHH
LLEEWERFLESGLLVRKGNRFFLSEPKGMELSNQILISMFKWWDEIN
HHHHHHHHHHCCCEEECCCEEEECCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNKFPRSAYVHIPFCHRRCFYCDFAVIPLGNKVETLHGYGSKTVKEYLHYLSKEILSIKH
CCCCCCCCEEEEEHHHCEEEEEEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHC
KSPLSTIYVGGGTPSILDPQQIKELIDLFKENYGVDYGAEITMEVDPASFNEDDLYGFIN
CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHH
AGISRFSLGVQSFNNQILQNSGRRHLREDAEKSCLWLKRVFDNGLIKSWSLDLIQNLPLS
HCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
GFKEWQDDLNKAITFLPPHISIYDLNIENGTVFKKLVNLGKLEVPSDEEAFRNSEVTHVI
CHHHHHHHHHHHEEECCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCHHHHCCCCEEEEE
LKNSGYSRYEISNYCLPRHQSRHNRVYWSGSGWWSFGQGSTSSPWGEKLTRPRVSKEYKE
EECCCCCEEECCCCCCCCCCCCCCEEEECCCCCEECCCCCCCCCCHHHHCCCHHHHHHHH
WVIRQYELNLDSSLTNKDFVYKELDEKIMLGMRLKEGIDIYEVFKEQNWENKKFESNLSK
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHH
LLEEWERFLESGLLVRKGNRFFLSEPKGMELSNQILISMFKWWDEIN
HHHHHHHHHHCCCEEECCCEEEECCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Coproporphyrinogen III; O2; H+

Specific reaction: coproporphyrinogen-III + O2 + 2 H+ = protoporphyrinogen-IX + 2 CO2 + 2 H2O

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]