Click here to switch to the map view.

The map label for this gene is 78779759

Identifier: 78779759

GI number: 78779759

Start: 1288756

End: 1290003

Strand: Reverse

Name: 78779759

Synonym: PMT9312_1375

Alternate gene names: NA

Gene position: 1290003-1288756 (Counterclockwise)

Preceding gene: 78779760

Following gene: 78779758

Centisome position: 75.47

GC content: 29.17

Gene sequence:

>1248_bases
TTGCTACTCCAAAACAATTTTAAGAATATAGGTTTAAGGGTTATCTCTTTTAAGAGTAAATCGACTTTAGGGTTTTTTAT
ATATTTTTTATTCTCAGTTTTTATATTTGATGCATCTAAAGCAGAAATTAATTTTCCAAAAACAAAAAATAATCAAATAG
AAATTGAGTACTTAGATTCAAGAAATGAATTAGAGGATTATATTATTGATACTGGCGATTCAATTTATTTAGAATTCTAT
CCTGCTAAAGAATTAAATGGAATTTTTCCTGTTAGTAAAGAGGGAGAATTATATTTACCTAGGCTAAATGAAACTTTTGT
AAGAGGATTGACTACTTCCGAGTTGAAAAAATTATTAGAAAAAAGATACTCTGAATTTCTTATTGAGCCAGATATAAAAG
TAAGAATCGCAGTTTTCAAGAGTATTAGAGTATTAGTTAAAGGTGAGTTAAGAAATCCCGGTTTTTATAAATTCCCTTCT
TATCGCTCATCTTCATTTATAAAGATCGATAAAAATAATAATTCTGATCTTGATTTATTGATAGACAATAATGAGCAATT
GAGAATAGGTCAAATTTCACAATTAAATAATCAATCTTCTAATAATATAATGGTTAAAAGACCTAGTAAAAATCTTTTTT
CCATTTCTGATGTTATTAGAAATGCTGGTGGTATAACATCCTTAACTGATTTATCTCGAATTGAAATTATTAGAGATGTA
CCTCTTGGAAAAGGTGGAGGGAAAAAGAGAGCAATTGTTGATTTTAATGCCTTTGTAAACAAATCTGATCCTACAAACGA
TATACGTATATTTGATGGAGATACTTTGTTTTTCCCTAAGTTAAGTAAGAAGGATATAGATCAAATACCGAAATCCATTT
TATCGGGTATTTCTCCAAGGTTTATTAGCGTAAGTCTTTTTGGTAGAGTCGAAAGTCCTGGAGTTGTAAAAGTTCCACTT
GAAGCTGCATTATCAGATGCGATTGATCTTACTGGACCAATCAAACCTCTCTCTGGAAAAATTGTTCTTATAAGGTACGA
GCAAGATGGGACAGTAATAAAGAAAAATATTTCATATTCAGCAAGTGCTAAAAGAGGCTCTAAAAGGAATCCTTTTTTAA
AAGAAAATGATTTAATAGCTGTTAAAAATAGTATTTTAGGAAAAACAACCGCTTTTCTTAAAGAAGTTACAGCTCCATTT
GTGGGTATTTATTCAACTAAACAGACAATTGAAGGTTTCACAGATTAA

Upstream 100 bases:

>100_bases
AAAAAGATGATAAATTAAATAATTCTTCTCTAAATATCTCTAAAGATTAATTTTCTATTTTTCTAGATTAATAGTAAAAT
AATTAAAAAAAATATCAATT

Downstream 100 bases:

>100_bases
GAAATAGGTTATCTTTATAATTATGATATTTATTATTATCTTTATAAATTTTCTTTTTGTTGGAAAACATTGAGCTAATA
GTAATTATGTATTAATTATT

Product: polysaccharide export-related periplasmic protein

Products: NA

Alternate protein names: Polysaccharide Biosynthesis/Export Protein; Polysaccharide Export-Related Periplasmic Protein; Polysaccharide Export Periplasmic Protein; GumB Protein; Polysaccharide Export Outer Membrane Protein; Capsule Polysaccharide Export Protein; Polysaccharide Export Or Synthesis Protein

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MLLQNNFKNIGLRVISFKSKSTLGFFIYFLFSVFIFDASKAEINFPKTKNNQIEIEYLDSRNELEDYIIDTGDSIYLEFY
PAKELNGIFPVSKEGELYLPRLNETFVRGLTTSELKKLLEKRYSEFLIEPDIKVRIAVFKSIRVLVKGELRNPGFYKFPS
YRSSSFIKIDKNNNSDLDLLIDNNEQLRIGQISQLNNQSSNNIMVKRPSKNLFSISDVIRNAGGITSLTDLSRIEIIRDV
PLGKGGGKKRAIVDFNAFVNKSDPTNDIRIFDGDTLFFPKLSKKDIDQIPKSILSGISPRFISVSLFGRVESPGVVKVPL
EAALSDAIDLTGPIKPLSGKIVLIRYEQDGTVIKKNISYSASAKRGSKRNPFLKENDLIAVKNSILGKTTAFLKEVTAPF
VGIYSTKQTIEGFTD

Sequences:

>Translated_415_residues
MLLQNNFKNIGLRVISFKSKSTLGFFIYFLFSVFIFDASKAEINFPKTKNNQIEIEYLDSRNELEDYIIDTGDSIYLEFY
PAKELNGIFPVSKEGELYLPRLNETFVRGLTTSELKKLLEKRYSEFLIEPDIKVRIAVFKSIRVLVKGELRNPGFYKFPS
YRSSSFIKIDKNNNSDLDLLIDNNEQLRIGQISQLNNQSSNNIMVKRPSKNLFSISDVIRNAGGITSLTDLSRIEIIRDV
PLGKGGGKKRAIVDFNAFVNKSDPTNDIRIFDGDTLFFPKLSKKDIDQIPKSILSGISPRFISVSLFGRVESPGVVKVPL
EAALSDAIDLTGPIKPLSGKIVLIRYEQDGTVIKKNISYSASAKRGSKRNPFLKENDLIAVKNSILGKTTAFLKEVTAPF
VGIYSTKQTIEGFTD
>Mature_415_residues
MLLQNNFKNIGLRVISFKSKSTLGFFIYFLFSVFIFDASKAEINFPKTKNNQIEIEYLDSRNELEDYIIDTGDSIYLEFY
PAKELNGIFPVSKEGELYLPRLNETFVRGLTTSELKKLLEKRYSEFLIEPDIKVRIAVFKSIRVLVKGELRNPGFYKFPS
YRSSSFIKIDKNNNSDLDLLIDNNEQLRIGQISQLNNQSSNNIMVKRPSKNLFSISDVIRNAGGITSLTDLSRIEIIRDV
PLGKGGGKKRAIVDFNAFVNKSDPTNDIRIFDGDTLFFPKLSKKDIDQIPKSILSGISPRFISVSLFGRVESPGVVKVPL
EAALSDAIDLTGPIKPLSGKIVLIRYEQDGTVIKKNISYSASAKRGSKRNPFLKENDLIAVKNSILGKTTAFLKEVTAPF
VGIYSTKQTIEGFTD

Specific function: Unknown

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46690; Mature: 46690

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLQNNFKNIGLRVISFKSKSTLGFFIYFLFSVFIFDASKAEINFPKTKNNQIEIEYLDS
CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEECCC
RNELEDYIIDTGDSIYLEFYPAKELNGIFPVSKEGELYLPRLNETFVRGLTTSELKKLLE
CCCCHHHEECCCCEEEEEEECCHHCCCCCCCCCCCCEEECCCCHHHHHCCCHHHHHHHHH
KRYSEFLIEPDIKVRIAVFKSIRVLVKGELRNPGFYKFPSYRSSSFIKIDKNNNSDLDLL
HHHHHEEECCCCEEEEEEEHHEEEEEEECCCCCCCEECCCCCCCCEEEEECCCCCCEEEE
IDNNEQLRIGQISQLNNQSSNNIMVKRPSKNLFSISDVIRNAGGITSLTDLSRIEIIRDV
ECCCCEEEEECHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHEECC
PLGKGGGKKRAIVDFNAFVNKSDPTNDIRIFDGDTLFFPKLSKKDIDQIPKSILSGISPR
CCCCCCCCCEEEEEEHHEECCCCCCCCEEEEECCEEECCCCCHHHHHHHHHHHHHCCCCC
FISVSLFGRVESPGVVKVPLEAALSDAIDLTGPIKPLSGKIVLIRYEQDGTVIKKNISYS
EEEEEEEECCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEEECCCCC
ASAKRGSKRNPFLKENDLIAVKNSILGKTTAFLKEVTAPFVGIYSTKQTIEGFTD
CCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCC
>Mature Secondary Structure
MLLQNNFKNIGLRVISFKSKSTLGFFIYFLFSVFIFDASKAEINFPKTKNNQIEIEYLDS
CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEECCC
RNELEDYIIDTGDSIYLEFYPAKELNGIFPVSKEGELYLPRLNETFVRGLTTSELKKLLE
CCCCHHHEECCCCEEEEEEECCHHCCCCCCCCCCCCEEECCCCHHHHHCCCHHHHHHHHH
KRYSEFLIEPDIKVRIAVFKSIRVLVKGELRNPGFYKFPSYRSSSFIKIDKNNNSDLDLL
HHHHHEEECCCCEEEEEEEHHEEEEEEECCCCCCCEECCCCCCCCEEEEECCCCCCEEEE
IDNNEQLRIGQISQLNNQSSNNIMVKRPSKNLFSISDVIRNAGGITSLTDLSRIEIIRDV
ECCCCEEEEECHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHEECC
PLGKGGGKKRAIVDFNAFVNKSDPTNDIRIFDGDTLFFPKLSKKDIDQIPKSILSGISPR
CCCCCCCCCEEEEEEHHEECCCCCCCCEEEEECCEEECCCCCHHHHHHHHHHHHHCCCCC
FISVSLFGRVESPGVVKVPLEAALSDAIDLTGPIKPLSGKIVLIRYEQDGTVIKKNISYS
EEEEEEEECCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEEECCCCC
ASAKRGSKRNPFLKENDLIAVKNSILGKTTAFLKEVTAPFVGIYSTKQTIEGFTD
CCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA