| Definition | Prochlorococcus marinus str. MIT 9312, complete genome. |
|---|---|
| Accession | NC_007577 |
| Length | 1,709,204 |
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The map label for this gene is 78779581
Identifier: 78779581
GI number: 78779581
Start: 1118446
End: 1120614
Strand: Reverse
Name: 78779581
Synonym: PMT9312_1198
Alternate gene names: NA
Gene position: 1120614-1118446 (Counterclockwise)
Preceding gene: 78779582
Following gene: 78779580
Centisome position: 65.56
GC content: 33.61
Gene sequence:
>2169_bases TTGAAAAAAAATCATAAGAAGCAATTATTAAAAAATGGATTTGCAATTCCCCAGGTTCTTTTACTTGGGATTGGAATAAG CGTTGCATTAACGGGAATACTTTATACCACGATATTAAATTTAGCCGGGAGCAGATTTAATAGACAGGAATTAATGTCTA AATCATCTTCTGAATCTGGCATAACAAATATAAGAAACTTACTTAACGATAGTGGTGATAGCTTTTATCATTATTTTTGG TTAAGTGATAGCTGTTCAGCATCAGCGACTTCTTGTCCTTCAGGAATTAACGTTGGTAATGTTACGATTCCTAATCCACC TCTAGAATACTGGTCAGATGAGATCTGGTGTAATGGAGCAAGTAACTGTAATGGCAGACAAAAAGCTCCTATGTGTGCAA GTGGTTCATCTTCTTTGGACCCAAGTCCTATTGATTGGACTACTCATAAATCTATCTTTAATCAATTAATTGATAGTAAC GAGGATAAAGTAGGTGATGATTTGGTGAATGCAAAAAGAGAATTTTTACAATATTTTGATGTTAAATCAACTGAATATAC AGGGACGGAAAAATATGGCCTTAGCTCGATAGTAGTAGAAGGGATTGTGAAAAATAAAAAAAATGGACAAAAAACAGGTT TCAATAAATTAAGAGCAAATATACAAGTAAATAACGATACTCCATTGAGAGGGTTTGGGTTTTTATCTGCAGGAGAAAAT GAATTAGATGGGGATAATTCTTTATTCCTTGGAAATTTAAATATTATCTCCAGCGAAGGTGATCCAGAGGGGGCAATTAT CTGGAGAAGAAATATCATAAATGAGGATGATTGCGCAAAAATCATAGAACAAGCTAATGCTAGTAGTGCTTCTCTTCCCA GCTCAGGAAATGGAGGTTTATGGGTTCAACCACTTGGGTTGCCTAAACAACCAAGATTAAAAAACATTCATGATGTACAA GGAGTTCTTTTGTGTACCCCTTTAAATTTGCAGAAGCTTCCTACAAATTGTCAATTGCCCAACTCTAGTGGGGCTTCTAA CTACAGAATTACTTCAATATATGCATCAACTGCCAACTCAAGGTTTGAGGTAACAACTTCAGATTCAAAACCAATAACTC TTGAAATTTTGGGTGATATAGATGTAAGTAATAATGGAATATTTTGTCACTTTGAAGAGGGTAGTAATGTTTGTGGTTCA GGTAATCCAAAAAATCTAACTATCTTATTTAAACAAGAGACAAAGTTGTCTGGTAATAAAATTTTTTGCAGCAATGATAA TACTAAAGGGGGTGTACGACTAGGAGTAAATAAGGTTATTGACTTATCAAAGTCTAGTTTTGATAATGACAATTTACCTG GAAGCAGTATTTTTATAGATAACACAGGTTGGTCATCTTCTGAAAGGTTTGGAGCTTTTTTATTGGGACCTAAAACAACT TTCATTTCTACATGGGCAAAGAGCCCGTGGGTTCAATATACAGAATCAAATCTTAGTAATGAAAATGAAAGAGCACCAAT GATAGTCTCGCATAGAGGAACATACGGTTGGATTTTAGATTCGTCTGGAGGGAGAGATAATCGCTGGCATGACAAAATGA CAAATCTTATTCTTACTAAAGATGGCTATTTAATTCCTTATTTGAATTTTACTGAAGGTGGGAATTCCCTAGAAATTATT GGGATTGGGTATGATGAAGAATATCAAAATTATTCCCGTTCATCAGAACCTAAGACAGGTAAATTTTTAATTTATAACGT AGATAATAATAATTATTACCTCAGAAGTTTTAGAATTACAGATAATTTAAACCCTAGTAATAAGAGAAGTAGCTTAGGAT TTTTCCCATGGGCAGCAGCTGTAATGGAAGATGAATTGATTCTTTTAGATAGTGCTGCGAACTTAAATCAAGGTGAATCT AAGAATTTGCTTGATCAATATAATATTAAGTTAGAGCCTAGGAGTGATAACAGAACTAAAAGGTTTTCAGGCGCTGCGTG GGTGAAAAATTTATGTTTTGATAAAAATTCAAGCCAAACCTGGGAATTTGATAATCAATTTATTGATGGCATTAAATCTA GATATGGAAATGACTTTAACTATGGAGTTAAGTTTTATAGAGGCAGATCTATTATTCTTTGGGATACACTAAAAGATTTT GAAAGTTAA
Upstream 100 bases:
>100_bases GCGGTACAGGTTCTGATGGAGCGTAAGGCTAATTTCTTTTTTTTAGTTGATAAAGACATATAAACTTAATTAAGGATTTA TTCTTTCATAGTTTAGGTTT
Downstream 100 bases:
>100_bases TATGCAAAAAAGTGAGTATTTTTATTTAAAAAAAAATTACTCCTCAGGCTTTGGATTGGTTGACTCAATTGTAAGTATTT CATTATTGGGTATAGTTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 722; Mature: 722
Protein sequence:
>722_residues MKKNHKKQLLKNGFAIPQVLLLGIGISVALTGILYTTILNLAGSRFNRQELMSKSSSESGITNIRNLLNDSGDSFYHYFW LSDSCSASATSCPSGINVGNVTIPNPPLEYWSDEIWCNGASNCNGRQKAPMCASGSSSLDPSPIDWTTHKSIFNQLIDSN EDKVGDDLVNAKREFLQYFDVKSTEYTGTEKYGLSSIVVEGIVKNKKNGQKTGFNKLRANIQVNNDTPLRGFGFLSAGEN ELDGDNSLFLGNLNIISSEGDPEGAIIWRRNIINEDDCAKIIEQANASSASLPSSGNGGLWVQPLGLPKQPRLKNIHDVQ GVLLCTPLNLQKLPTNCQLPNSSGASNYRITSIYASTANSRFEVTTSDSKPITLEILGDIDVSNNGIFCHFEEGSNVCGS GNPKNLTILFKQETKLSGNKIFCSNDNTKGGVRLGVNKVIDLSKSSFDNDNLPGSSIFIDNTGWSSSERFGAFLLGPKTT FISTWAKSPWVQYTESNLSNENERAPMIVSHRGTYGWILDSSGGRDNRWHDKMTNLILTKDGYLIPYLNFTEGGNSLEII GIGYDEEYQNYSRSSEPKTGKFLIYNVDNNNYYLRSFRITDNLNPSNKRSSLGFFPWAAAVMEDELILLDSAANLNQGES KNLLDQYNIKLEPRSDNRTKRFSGAAWVKNLCFDKNSSQTWEFDNQFIDGIKSRYGNDFNYGVKFYRGRSIILWDTLKDF ES
Sequences:
>Translated_722_residues MKKNHKKQLLKNGFAIPQVLLLGIGISVALTGILYTTILNLAGSRFNRQELMSKSSSESGITNIRNLLNDSGDSFYHYFW LSDSCSASATSCPSGINVGNVTIPNPPLEYWSDEIWCNGASNCNGRQKAPMCASGSSSLDPSPIDWTTHKSIFNQLIDSN EDKVGDDLVNAKREFLQYFDVKSTEYTGTEKYGLSSIVVEGIVKNKKNGQKTGFNKLRANIQVNNDTPLRGFGFLSAGEN ELDGDNSLFLGNLNIISSEGDPEGAIIWRRNIINEDDCAKIIEQANASSASLPSSGNGGLWVQPLGLPKQPRLKNIHDVQ GVLLCTPLNLQKLPTNCQLPNSSGASNYRITSIYASTANSRFEVTTSDSKPITLEILGDIDVSNNGIFCHFEEGSNVCGS GNPKNLTILFKQETKLSGNKIFCSNDNTKGGVRLGVNKVIDLSKSSFDNDNLPGSSIFIDNTGWSSSERFGAFLLGPKTT FISTWAKSPWVQYTESNLSNENERAPMIVSHRGTYGWILDSSGGRDNRWHDKMTNLILTKDGYLIPYLNFTEGGNSLEII GIGYDEEYQNYSRSSEPKTGKFLIYNVDNNNYYLRSFRITDNLNPSNKRSSLGFFPWAAAVMEDELILLDSAANLNQGES KNLLDQYNIKLEPRSDNRTKRFSGAAWVKNLCFDKNSSQTWEFDNQFIDGIKSRYGNDFNYGVKFYRGRSIILWDTLKDF ES >Mature_722_residues MKKNHKKQLLKNGFAIPQVLLLGIGISVALTGILYTTILNLAGSRFNRQELMSKSSSESGITNIRNLLNDSGDSFYHYFW LSDSCSASATSCPSGINVGNVTIPNPPLEYWSDEIWCNGASNCNGRQKAPMCASGSSSLDPSPIDWTTHKSIFNQLIDSN EDKVGDDLVNAKREFLQYFDVKSTEYTGTEKYGLSSIVVEGIVKNKKNGQKTGFNKLRANIQVNNDTPLRGFGFLSAGEN ELDGDNSLFLGNLNIISSEGDPEGAIIWRRNIINEDDCAKIIEQANASSASLPSSGNGGLWVQPLGLPKQPRLKNIHDVQ GVLLCTPLNLQKLPTNCQLPNSSGASNYRITSIYASTANSRFEVTTSDSKPITLEILGDIDVSNNGIFCHFEEGSNVCGS GNPKNLTILFKQETKLSGNKIFCSNDNTKGGVRLGVNKVIDLSKSSFDNDNLPGSSIFIDNTGWSSSERFGAFLLGPKTT FISTWAKSPWVQYTESNLSNENERAPMIVSHRGTYGWILDSSGGRDNRWHDKMTNLILTKDGYLIPYLNFTEGGNSLEII GIGYDEEYQNYSRSSEPKTGKFLIYNVDNNNYYLRSFRITDNLNPSNKRSSLGFFPWAAAVMEDELILLDSAANLNQGES KNLLDQYNIKLEPRSDNRTKRFSGAAWVKNLCFDKNSSQTWEFDNQFIDGIKSRYGNDFNYGVKFYRGRSIILWDTLKDF ES
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 80119; Mature: 80119
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKNHKKQLLKNGFAIPQVLLLGIGISVALTGILYTTILNLAGSRFNRQELMSKSSSESG CCCCHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCH ITNIRNLLNDSGDSFYHYFWLSDSCSASATSCPSGINVGNVTIPNPPLEYWSDEIWCNGA HHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCHHHCCCEEEECCC SNCNGRQKAPMCASGSSSLDPSPIDWTTHKSIFNQLIDSNEDKVGDDLVNAKREFLQYFD CCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC VKSTEYTGTEKYGLSSIVVEGIVKNKKNGQKTGFNKLRANIQVNNDTPLRGFGFLSAGEN CCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCC ELDGDNSLFLGNLNIISSEGDPEGAIIWRRNIINEDDCAKIIEQANASSASLPSSGNGGL CCCCCCCEEEEEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCE WVQPLGLPKQPRLKNIHDVQGVLLCTPLNLQKLPTNCQLPNSSGASNYRITSIYASTANS EEEECCCCCCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCCEEEEEEEEECCCC RFEVTTSDSKPITLEILGDIDVSNNGIFCHFEEGSNVCGSGNPKNLTILFKQETKLSGNK EEEEEECCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCE IFCSNDNTKGGVRLGVNKVIDLSKSSFDNDNLPGSSIFIDNTGWSSSERFGAFLLGPKTT EEECCCCCCCCEEECCHHHEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCHH FISTWAKSPWVQYTESNLSNENERAPMIVSHRGTYGWILDSSGGRDNRWHDKMTNLILTK EEEHHCCCCCEEEHHCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCHHHHHCEEEEEC DGYLIPYLNFTEGGNSLEIIGIGYDEEYQNYSRSSEPKTGKFLIYNVDNNNYYLRSFRIT CCCEEEEEEECCCCCEEEEEEECCCHHHHHCCCCCCCCCCEEEEEEECCCCEEEEEEEEE DNLNPSNKRSSLGFFPWAAAVMEDELILLDSAANLNQGESKNLLDQYNIKLEPRSDNRTK CCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHCCEEEECCCCCCCH RFSGAAWVKNLCFDKNSSQTWEFDNQFIDGIKSRYGNDFNYGVKFYRGRSIILWDTLKDF HCCCHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEECHHHH ES CC >Mature Secondary Structure MKKNHKKQLLKNGFAIPQVLLLGIGISVALTGILYTTILNLAGSRFNRQELMSKSSSESG CCCCHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCH ITNIRNLLNDSGDSFYHYFWLSDSCSASATSCPSGINVGNVTIPNPPLEYWSDEIWCNGA HHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCHHHCCCEEEECCC SNCNGRQKAPMCASGSSSLDPSPIDWTTHKSIFNQLIDSNEDKVGDDLVNAKREFLQYFD CCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC VKSTEYTGTEKYGLSSIVVEGIVKNKKNGQKTGFNKLRANIQVNNDTPLRGFGFLSAGEN CCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCC ELDGDNSLFLGNLNIISSEGDPEGAIIWRRNIINEDDCAKIIEQANASSASLPSSGNGGL CCCCCCCEEEEEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCE WVQPLGLPKQPRLKNIHDVQGVLLCTPLNLQKLPTNCQLPNSSGASNYRITSIYASTANS EEEECCCCCCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCCEEEEEEEEECCCC RFEVTTSDSKPITLEILGDIDVSNNGIFCHFEEGSNVCGSGNPKNLTILFKQETKLSGNK EEEEEECCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCE IFCSNDNTKGGVRLGVNKVIDLSKSSFDNDNLPGSSIFIDNTGWSSSERFGAFLLGPKTT EEECCCCCCCCEEECCHHHEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCHH FISTWAKSPWVQYTESNLSNENERAPMIVSHRGTYGWILDSSGGRDNRWHDKMTNLILTK EEEHHCCCCCEEEHHCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCHHHHHCEEEEEC DGYLIPYLNFTEGGNSLEIIGIGYDEEYQNYSRSSEPKTGKFLIYNVDNNNYYLRSFRIT CCCEEEEEEECCCCCEEEEEEECCCHHHHHCCCCCCCCCCEEEEEEECCCCEEEEEEEEE DNLNPSNKRSSLGFFPWAAAVMEDELILLDSAANLNQGESKNLLDQYNIKLEPRSDNRTK CCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHCCEEEECCCCCCCH RFSGAAWVKNLCFDKNSSQTWEFDNQFIDGIKSRYGNDFNYGVKFYRGRSIILWDTLKDF HCCCHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEECHHHH ES CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA