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The map label for this gene is yodJ [H]

Identifier: 78779153

GI number: 78779153

Start: 716719

End: 717432

Strand: Direct

Name: yodJ [H]

Synonym: PMT9312_0769

Alternate gene names: 78779153

Gene position: 716719-717432 (Clockwise)

Preceding gene: 78779151

Following gene: 78779154

Centisome position: 41.93

GC content: 31.09

Gene sequence:

>714_bases
TTGGAACAAAAAAAGGATATAAATCAATTTGATATACCGCTTGCCAAAAGAACTTATTTAACTAATTCTAACTCAATATT
ATTAAAAAAAATATTAATATTTTCTCCATTTCTTTTAATTCTTTTATCTATCGCTGCATTACGATTGATTAGAAATATAG
AATTAGGACCTCTTAGCAATCTTAATTTTCAGGCTGAGAGAAATCACGACCATAGAATTTTGGGGCATCTACCCTATTCT
GAAATTCCTACGGAGAAACTAGTTTTAATTGAGCCCAATGTTGAAGTTCACATTGATATGCGTGATTCCTTATTAAAGAT
GAGAGAAGAAGCGAAAAAAGATGGGATATTTTTGGTCTTCTTAAGTGGTTTTAGATCAATAAATTTGCAAAACGATATCT
TTTATTCTTTAAAGTCTATTAGAAATCAAGAAGCGGCAGAAAGAGCTAGAGTTTCAGCACCTCCAGGTTATTCTGAACAT
AGCACTGGTTTCGCAATTGATATTGGTGATGCTACTCAAAGAGAAACAGACTTTGAGACAGAATTCGAAAATACTGACGC
CTTTAGATGGTTAAAAAAGAATGCAGCTAAGTTTCACTTTAGGTTATCATTTGACAAAAATAATAAATATATAGATTATG
AACCCTGGCATTGGAGATATGAAGGCTCAATTGAAGCTTTAAAAGTTTTTGAAATTTCTAATAGAGGATTATAA

Upstream 100 bases:

>100_bases
ATACTGTATATAAAAGCTACATCTTTTTTGCTTATAAAAGTGCATTTCTTAAAATAATAGTTAATATCGAAATATGTTTT
CCAAATTCACCCTCTAAATA

Downstream 100 bases:

>100_bases
ATCTAATTGATTCAAAAAATATTCAATATGATTATGTTTTTCAAAGTCTTAAAGAGAAAATTCTCATAATAAGCATTCTT
TGAGTTAGCCTTAATTAAGT

Product: putative carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MEQKKDINQFDIPLAKRTYLTNSNSILLKKILIFSPFLLILLSIAALRLIRNIELGPLSNLNFQAERNHDHRILGHLPYS
EIPTEKLVLIEPNVEVHIDMRDSLLKMREEAKKDGIFLVFLSGFRSINLQNDIFYSLKSIRNQEAAERARVSAPPGYSEH
STGFAIDIGDATQRETDFETEFENTDAFRWLKKNAAKFHFRLSFDKNNKYIDYEPWHWRYEGSIEALKVFEISNRGL

Sequences:

>Translated_237_residues
MEQKKDINQFDIPLAKRTYLTNSNSILLKKILIFSPFLLILLSIAALRLIRNIELGPLSNLNFQAERNHDHRILGHLPYS
EIPTEKLVLIEPNVEVHIDMRDSLLKMREEAKKDGIFLVFLSGFRSINLQNDIFYSLKSIRNQEAAERARVSAPPGYSEH
STGFAIDIGDATQRETDFETEFENTDAFRWLKKNAAKFHFRLSFDKNNKYIDYEPWHWRYEGSIEALKVFEISNRGL
>Mature_237_residues
MEQKKDINQFDIPLAKRTYLTNSNSILLKKILIFSPFLLILLSIAALRLIRNIELGPLSNLNFQAERNHDHRILGHLPYS
EIPTEKLVLIEPNVEVHIDMRDSLLKMREEAKKDGIFLVFLSGFRSINLQNDIFYSLKSIRNQEAAERARVSAPPGYSEH
STGFAIDIGDATQRETDFETEFENTDAFRWLKKNAAKFHFRLSFDKNNKYIDYEPWHWRYEGSIEALKVFEISNRGL

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 27646; Mature: 27646

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQKKDINQFDIPLAKRTYLTNSNSILLKKILIFSPFLLILLSIAALRLIRNIELGPLSN
CCCCCCCCHHCCCCHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
LNFQAERNHDHRILGHLPYSEIPTEKLVLIEPNVEVHIDMRDSLLKMREEAKKDGIFLVF
CCEEECCCCCCEEEECCCCCCCCCCEEEEECCCCEEEECCHHHHHHHHHHHHHCCEEEEE
LSGFRSINLQNDIFYSLKSIRNQEAAERARVSAPPGYSEHSTGFAIDIGDATQRETDFET
ECCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
EFENTDAFRWLKKNAAKFHFRLSFDKNNKYIDYEPWHWRYEGSIEALKVFEISNRGL
CCCCCHHHHHHHHCCEEEEEEEEECCCCCEECCCCCEEEECCCEEEEEEEEECCCCC
>Mature Secondary Structure
MEQKKDINQFDIPLAKRTYLTNSNSILLKKILIFSPFLLILLSIAALRLIRNIELGPLSN
CCCCCCCCHHCCCCHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
LNFQAERNHDHRILGHLPYSEIPTEKLVLIEPNVEVHIDMRDSLLKMREEAKKDGIFLVF
CCEEECCCCCCEEEECCCCCCCCCCEEEEECCCCEEEECCHHHHHHHHHHHHHCCEEEEE
LSGFRSINLQNDIFYSLKSIRNQEAAERARVSAPPGYSEHSTGFAIDIGDATQRETDFET
ECCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
EFENTDAFRWLKKNAAKFHFRLSFDKNNKYIDYEPWHWRYEGSIEALKVFEISNRGL
CCCCCHHHHHHHHCCEEEEEEEEECCCCCEECCCCCEEEECCCEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]