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The map label for this gene is xisC [H]

Identifier: 78778909

GI number: 78778909

Start: 489609

End: 490778

Strand: Reverse

Name: xisC [H]

Synonym: PMT9312_0524

Alternate gene names: 78778909

Gene position: 490778-489609 (Counterclockwise)

Preceding gene: 78778913

Following gene: 78778908

Centisome position: 28.71

GC content: 30.26

Gene sequence:

>1170_bases
ATGAACGTAATTCAGGAAATTAATAATGTCAATGATAAATTTGCTACTCAAGGAAGCAAGCTTAGAATTGAAAAAAGAGG
AGAGAAATTAAATATCAGAGGTTCACTACCTACTAAAGAAGATAAAAATAACTTTAAAATTCAAAGAATATCTCTTGGTA
TAAAGGCTGATATTTCTGGATTAGAGGAGGCTAAAAAAAAATTAAAATTAATCAATTTGCAACTAGAACTAAATCAATTT
GACTGGATTAATTGGATAAATAAACCTAATAAAAAGGAAATAAAAAATGATTTTGAATTTTCAAAAAGATTAAATCAATT
TGAGGAATTTTTCTTTAAAGAAAGAAAAAATGAATATTTAACCAGCACTAGAAAAACTACTTGGAGAAGTTCTTATAAGC
CCTATATGAAAAGAATTCTTTATATTTATGATATTGATAACAATGAAGATTTAGAAATTATATTTCAAAAAGCACTTGAA
AGTTACAAGGAAGGGAGTAGAAGTAGGAAACAATGCGCTACTTCCCTAAGTGTTTTAGCAAAGTTTTTGGACATTAAACT
CCCAGAAAATTGGAAATTAAATTCTAAAGGATATGGCCTAAATAAAGCAGGCTATAGAGATCTCCCCACAGACGAGTTGA
TAGAGAAACTTTGGGATAAGATACCAAACAACTCTTGGAAATTTGTTTTTGGTCTTATGGCTACATATGGATTAAGAAAT
CACGAAGTGTTTTTTTGTGACTTAAGTTCTTTAACAAATTTTGGAGACAAGATCATTAGAGTTTTACCTACGACGAAAAC
AGGGGAACATCAAATTTGGCCATTTCATCCTGAATGGGTAGAAAAGTTCGAATTAACAAAACTTGGTAAAAATCCAGAAC
TACTACCAAATATTAATAGAGACCTTAAAATCACAACCTTACAAAATATTGGAAAAAAAATTACAGACCAGTTTAAGCGA
TACTCTTTACAGATAAAACCTTATGATCTAAGGCATGCTTGGGCAGTAAGAACAATTTTTTATGATTTACCTGATACTGT
AGCTGCCAGAATGATGGGACATTCGGTAAGCTTACATACTCAAACTTATCACCACTGGATTACTAAAAGAGATCAACAAC
AGGCAGTCAATAATGCACTTTTAAGAGTTAAGAGAGCTAAAAGTCTTTAA

Upstream 100 bases:

>100_bases
CCTAAATTCATTAGCAAGACGCCTATTTTATTCATTTAAAATTTATGGTGATTGAAAATCAACATTAAAAACGTCATTAT
AAGGTCAATTATAGAAGTAA

Downstream 100 bases:

>100_bases
AGATTTATAATCACTTAATAAAATTAGAGTTATATGCAAGAGCAACCATTATCTTCCGAGAAAATATTCAACCTCGATAA
TCAAGCCAAAGAACTTGGAA

Product: phage integrase family protein

Products: NA

Alternate protein names: HupL element site-specific recombinase [H]

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MNVIQEINNVNDKFATQGSKLRIEKRGEKLNIRGSLPTKEDKNNFKIQRISLGIKADISGLEEAKKKLKLINLQLELNQF
DWINWINKPNKKEIKNDFEFSKRLNQFEEFFFKERKNEYLTSTRKTTWRSSYKPYMKRILYIYDIDNNEDLEIIFQKALE
SYKEGSRSRKQCATSLSVLAKFLDIKLPENWKLNSKGYGLNKAGYRDLPTDELIEKLWDKIPNNSWKFVFGLMATYGLRN
HEVFFCDLSSLTNFGDKIIRVLPTTKTGEHQIWPFHPEWVEKFELTKLGKNPELLPNINRDLKITTLQNIGKKITDQFKR
YSLQIKPYDLRHAWAVRTIFYDLPDTVAARMMGHSVSLHTQTYHHWITKRDQQQAVNNALLRVKRAKSL

Sequences:

>Translated_389_residues
MNVIQEINNVNDKFATQGSKLRIEKRGEKLNIRGSLPTKEDKNNFKIQRISLGIKADISGLEEAKKKLKLINLQLELNQF
DWINWINKPNKKEIKNDFEFSKRLNQFEEFFFKERKNEYLTSTRKTTWRSSYKPYMKRILYIYDIDNNEDLEIIFQKALE
SYKEGSRSRKQCATSLSVLAKFLDIKLPENWKLNSKGYGLNKAGYRDLPTDELIEKLWDKIPNNSWKFVFGLMATYGLRN
HEVFFCDLSSLTNFGDKIIRVLPTTKTGEHQIWPFHPEWVEKFELTKLGKNPELLPNINRDLKITTLQNIGKKITDQFKR
YSLQIKPYDLRHAWAVRTIFYDLPDTVAARMMGHSVSLHTQTYHHWITKRDQQQAVNNALLRVKRAKSL
>Mature_389_residues
MNVIQEINNVNDKFATQGSKLRIEKRGEKLNIRGSLPTKEDKNNFKIQRISLGIKADISGLEEAKKKLKLINLQLELNQF
DWINWINKPNKKEIKNDFEFSKRLNQFEEFFFKERKNEYLTSTRKTTWRSSYKPYMKRILYIYDIDNNEDLEIIFQKALE
SYKEGSRSRKQCATSLSVLAKFLDIKLPENWKLNSKGYGLNKAGYRDLPTDELIEKLWDKIPNNSWKFVFGLMATYGLRN
HEVFFCDLSSLTNFGDKIIRVLPTTKTGEHQIWPFHPEWVEKFELTKLGKNPELLPNINRDLKITTLQNIGKKITDQFKR
YSLQIKPYDLRHAWAVRTIFYDLPDTVAARMMGHSVSLHTQTYHHWITKRDQQQAVNNALLRVKRAKSL

Specific function: Essential for DNA excision. Site specific recombinase necessary for the excision of the 10.5 kb hupL element during heterocyst differentiation [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xisA/xisC recombinase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46001; Mature: 46001

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVIQEINNVNDKFATQGSKLRIEKRGEKLNIRGSLPTKEDKNNFKIQRISLGIKADISG
CCHHHHHHCCCHHHHCCCCEEEEEECCCEEEEECCCCCCCCCCCEEEEEEEECCHHCHHH
LEEAKKKLKLINLQLELNQFDWINWINKPNKKEIKNDFEFSKRLNQFEEFFFKERKNEYL
HHHHHHHHEEEEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSTRKTTWRSSYKPYMKRILYIYDIDNNEDLEIIFQKALESYKEGSRSRKQCATSLSVLA
HHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
KFLDIKLPENWKLNSKGYGLNKAGYRDLPTDELIEKLWDKIPNNSWKFVFGLMATYGLRN
HHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
HEVFFCDLSSLTNFGDKIIRVLPTTKTGEHQIWPFHPEWVEKFELTKLGKNPELLPNINR
CEEEEEEHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
DLKITTLQNIGKKITDQFKRYSLQIKPYDLRHAWAVRTIFYDLPDTVAARMMGHSVSLHT
CEEEEHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEH
QTYHHWITKRDQQQAVNNALLRVKRAKSL
HHHHHHHCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNVIQEINNVNDKFATQGSKLRIEKRGEKLNIRGSLPTKEDKNNFKIQRISLGIKADISG
CCHHHHHHCCCHHHHCCCCEEEEEECCCEEEEECCCCCCCCCCCEEEEEEEECCHHCHHH
LEEAKKKLKLINLQLELNQFDWINWINKPNKKEIKNDFEFSKRLNQFEEFFFKERKNEYL
HHHHHHHHEEEEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSTRKTTWRSSYKPYMKRILYIYDIDNNEDLEIIFQKALESYKEGSRSRKQCATSLSVLA
HHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
KFLDIKLPENWKLNSKGYGLNKAGYRDLPTDELIEKLWDKIPNNSWKFVFGLMATYGLRN
HHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
HEVFFCDLSSLTNFGDKIIRVLPTTKTGEHQIWPFHPEWVEKFELTKLGKNPELLPNINR
CEEEEEEHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
DLKITTLQNIGKKITDQFKRYSLQIKPYDLRHAWAVRTIFYDLPDTVAARMMGHSVSLHT
CEEEEHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEH
QTYHHWITKRDQQQAVNNALLRVKRAKSL
HHHHHHHCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7846053; 11759840 [H]