| Definition | Prochlorococcus marinus str. MIT 9312, complete genome. |
|---|---|
| Accession | NC_007577 |
| Length | 1,709,204 |
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The map label for this gene is spoVD [H]
Identifier: 78778903
GI number: 78778903
Start: 483485
End: 485236
Strand: Direct
Name: spoVD [H]
Synonym: PMT9312_0518
Alternate gene names: 78778903
Gene position: 483485-485236 (Clockwise)
Preceding gene: 78778902
Following gene: 78778904
Centisome position: 28.29
GC content: 32.99
Gene sequence:
>1752_bases ATGAGAAAATATAAAAAAATTGTTCAAATTATACCTCTTGATAAAAGGAGATTTAAATTACTCTATATTTTTAGCTTGCT AATGATATTTTGTTTGTTTGGTAGGTTAGTTAACTTGCAAGTCTTTAATGCCTCAGATTTGAAAAAGAAAGCGAGATTAA TACAATCTTCTACAACTAACGCCTTGAAAAAAAGGAGATCGATTGTTGACAGAAATAATAGACTCATTGCTTACGATAAA CCCCTTTATAAGCTGTGGGCTCATCCAAGATATTTTAATTTTCCTGGTGATTCTATTAAAGAAGTTCGTAGCATTGAAGA AGTTGCGAAAAAATTATCACCTATTTTGGATATTAAAGATAAAAAACTCTTGGAAAAATTTAATGACAAAAGCAGCGGCA TCATGCTTTTGGATAAAATTTCTGAAGAAAAAGCAGAAAAGATTAAAAACCTTCAAATAAGCGGACTTGATTTGTTTAAA TACTCTCAAAGATATTATCCACAAGGGGAACTTTATTCCAATCTTGTTGGTTTTGTTAATGATGAGAATAAAGGTTCAGC AGGTTTAGAGCTTCATTTGGATAATCAAATTAAAGTTTTTAATAAAAGTAATCTAATAAAAAGAGGAGGAGATGGCACCC CTCTGCCTGATAATTCAGCTCCAGGTGATTTTATTTATGATTACAAGAGTTTAGGTCTAACTATAGATTCAAAATTACAG AAAGCGTCATTAAATGCATTGTCAAAGCAAATAAGTAAATGGAAAGCAAAGAAGGGATTTGCCATGGTTATGGATGTTAA TAATGGTCAGATTCTTTCCTTGGTTGCAGTGCCTTCATATGATCCGAATAAATTTTGGCAGTATGATTCTGAACTCTTTA GAGGTTGGTATTCTCAAGATTTATTTGAGCCGGGTTCAACTTTTAAGCCTATTAATCTTGCCTTAGCGTTAGAAGAAAAA GTAATCCAAAAAGATGGTTTAGTTGAAGATAGCGGAAAGATTAATGTTGGAGGATGGACACTTTCTAATTGGGATAAAAA AGGTAATGGATACATTGATTATCCAAAAGTATTGCAGGTTTCAAGTAATGTTGGGATGGTAAAAATAATGCAAAATTTAG AGCCTAGAGTTTATTGGGATTGGCTGAAGAATTTAGGTATAAATAAAAATTTAGAGACTGACTTATATGAATCAACTGCA GGCCAATTAAAGAGAAAAGATTTATTCGTAAATCAATCAATAGAGCCTGCTGTGGCTTCTTTTGGGAAGGGTTTCTCAAT CTCGCCACTTAAATTGGCTCAACTTCATGCGGCTCTAGCTAATGGCGGTTTTGAAGTTACTCCCCATGTAACCTCAAATT TCAAAGAAAGAGTAAATCAAAACTCAAAAAAACAATTTTTTTCTCCTGAGGTCTCTAAAATTGTTCTTGAATGGATGGAG AGCGTGGTTGATAAAGGTAGTGGATCTGGAGTGAAAATTGAGGGTTATAGAATAGCTGGAAAAACAGGGACTTCTCAAAA AGCTTTAAATGGTGTGTATACAAGTAAAAAAGTTTGTAGTTTTGTCGCCACCTTACCAGTAAATGATCCGAAATATGTTG TCCTTGTTGTCGTTGATGAGCCATCAAAATTATATGCATATGGTTCAACTGTTGCAGTACCAGTTGCGAAAGAAATTATC GAGAGTTTAATAGTAATTGAAAAAATACCTCCTAAGGTTAAAGGTCATGGAATGATTGTTAAAAAACTCTAA
Upstream 100 bases:
>100_bases ATCTCAATATAATTAAAGATAAAAAAGAAAGTCTTTTCAAGAAAAATTTTAGAAGCTTAATTGAAGGTTTAAGAGATAGC AAATATCAAAGGGGATATTG
Downstream 100 bases:
>100_bases AATTTTCTCATTTATATAAATATTTAGTTCATTATTTGATGATTTCATTAGGAATTAAAGCTAGTTTATATATACGTATG ATTATCTAGATATGAAATCA
Product: putative peptidoglycan synthetase (pbp transpeptidase domain)
Products: NA
Alternate protein names: Sporulation-specific penicillin-binding protein [H]
Number of amino acids: Translated: 583; Mature: 583
Protein sequence:
>583_residues MRKYKKIVQIIPLDKRRFKLLYIFSLLMIFCLFGRLVNLQVFNASDLKKKARLIQSSTTNALKKRRSIVDRNNRLIAYDK PLYKLWAHPRYFNFPGDSIKEVRSIEEVAKKLSPILDIKDKKLLEKFNDKSSGIMLLDKISEEKAEKIKNLQISGLDLFK YSQRYYPQGELYSNLVGFVNDENKGSAGLELHLDNQIKVFNKSNLIKRGGDGTPLPDNSAPGDFIYDYKSLGLTIDSKLQ KASLNALSKQISKWKAKKGFAMVMDVNNGQILSLVAVPSYDPNKFWQYDSELFRGWYSQDLFEPGSTFKPINLALALEEK VIQKDGLVEDSGKINVGGWTLSNWDKKGNGYIDYPKVLQVSSNVGMVKIMQNLEPRVYWDWLKNLGINKNLETDLYESTA GQLKRKDLFVNQSIEPAVASFGKGFSISPLKLAQLHAALANGGFEVTPHVTSNFKERVNQNSKKQFFSPEVSKIVLEWME SVVDKGSGSGVKIEGYRIAGKTGTSQKALNGVYTSKKVCSFVATLPVNDPKYVVLVVVDEPSKLYAYGSTVAVPVAKEII ESLIVIEKIPPKVKGHGMIVKKL
Sequences:
>Translated_583_residues MRKYKKIVQIIPLDKRRFKLLYIFSLLMIFCLFGRLVNLQVFNASDLKKKARLIQSSTTNALKKRRSIVDRNNRLIAYDK PLYKLWAHPRYFNFPGDSIKEVRSIEEVAKKLSPILDIKDKKLLEKFNDKSSGIMLLDKISEEKAEKIKNLQISGLDLFK YSQRYYPQGELYSNLVGFVNDENKGSAGLELHLDNQIKVFNKSNLIKRGGDGTPLPDNSAPGDFIYDYKSLGLTIDSKLQ KASLNALSKQISKWKAKKGFAMVMDVNNGQILSLVAVPSYDPNKFWQYDSELFRGWYSQDLFEPGSTFKPINLALALEEK VIQKDGLVEDSGKINVGGWTLSNWDKKGNGYIDYPKVLQVSSNVGMVKIMQNLEPRVYWDWLKNLGINKNLETDLYESTA GQLKRKDLFVNQSIEPAVASFGKGFSISPLKLAQLHAALANGGFEVTPHVTSNFKERVNQNSKKQFFSPEVSKIVLEWME SVVDKGSGSGVKIEGYRIAGKTGTSQKALNGVYTSKKVCSFVATLPVNDPKYVVLVVVDEPSKLYAYGSTVAVPVAKEII ESLIVIEKIPPKVKGHGMIVKKL >Mature_583_residues MRKYKKIVQIIPLDKRRFKLLYIFSLLMIFCLFGRLVNLQVFNASDLKKKARLIQSSTTNALKKRRSIVDRNNRLIAYDK PLYKLWAHPRYFNFPGDSIKEVRSIEEVAKKLSPILDIKDKKLLEKFNDKSSGIMLLDKISEEKAEKIKNLQISGLDLFK YSQRYYPQGELYSNLVGFVNDENKGSAGLELHLDNQIKVFNKSNLIKRGGDGTPLPDNSAPGDFIYDYKSLGLTIDSKLQ KASLNALSKQISKWKAKKGFAMVMDVNNGQILSLVAVPSYDPNKFWQYDSELFRGWYSQDLFEPGSTFKPINLALALEEK VIQKDGLVEDSGKINVGGWTLSNWDKKGNGYIDYPKVLQVSSNVGMVKIMQNLEPRVYWDWLKNLGINKNLETDLYESTA GQLKRKDLFVNQSIEPAVASFGKGFSISPLKLAQLHAALANGGFEVTPHVTSNFKERVNQNSKKQFFSPEVSKIVLEWME SVVDKGSGSGVKIEGYRIAGKTGTSQKALNGVYTSKKVCSFVATLPVNDPKYVVLVVVDEPSKLYAYGSTVAVPVAKEII ESLIVIEKIPPKVKGHGMIVKKL
Specific function: Penicillin-binding protein with an unknown catalytic activity. May have a specialized role in the morphogenesis of spore cortex, which is a modified form of peptidoglycan. Pore cortex formation is determined primarily by the mother cell [H]
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PASTA domain [H]
Homologues:
Organism=Escherichia coli, GI1786272, Length=567, Percent_Identity=29.4532627865961, Blast_Score=217, Evalue=2e-57, Organism=Escherichia coli, GI1786854, Length=603, Percent_Identity=21.2271973466003, Blast_Score=104, Evalue=1e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR005543 - InterPro: IPR005311 - InterPro: IPR001460 - InterPro: IPR011927 [H]
Pfam domain/function: PF03793 PASTA; PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 65637; Mature: 65637
Theoretical pI: Translated: 10.15; Mature: 10.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKYKKIVQIIPLDKRRFKLLYIFSLLMIFCLFGRLVNLQVFNASDLKKKARLIQSSTTN CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHH ALKKRRSIVDRNNRLIAYDKPLYKLWAHPRYFNFPGDSIKEVRSIEEVAKKLSPILDIKD HHHHHHHHHCCCCEEEEECCHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCH KKLLEKFNDKSSGIMLLDKISEEKAEKIKNLQISGLDLFKYSQRYYPQGELYSNLVGFVN HHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCEECCCHHHHHHHHCCCCHHHHHHHHHCCC DENKGSAGLELHLDNQIKVFNKSNLIKRGGDGTPLPDNSAPGDFIYDYKSLGLTIDSKLQ CCCCCCCCEEEEECCEEEEECCCCHHHCCCCCCCCCCCCCCCCEEEEHHHCCEEEHHHHH KASLNALSKQISKWKAKKGFAMVMDVNNGQILSLVAVPSYDPNKFWQYDSELFRGWYSQD HHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHH LFEPGSTFKPINLALALEEKVIQKDGLVEDSGKINVGGWTLSNWDKKGNGYIDYPKVLQV HCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCEEEECCEEECCCCCCCCCCCCCCHHEEE SSNVGMVKIMQNLEPRVYWDWLKNLGINKNLETDLYESTAGQLKRKDLFVNQSIEPAVAS CCCCCHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCHHHHH FGKGFSISPLKLAQLHAALANGGFEVTPHVTSNFKERVNQNSKKQFFSPEVSKIVLEWME CCCCCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHH SVVDKGSGSGVKIEGYRIAGKTGTSQKALNGVYTSKKVCSFVATLPVNDPKYVVLVVVDE HHHCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC PSKLYAYGSTVAVPVAKEIIESLIVIEKIPPKVKGHGMIVKKL CCEEEEECCEEEHHHHHHHHHHHHHHHCCCCCCCCCCEEEECC >Mature Secondary Structure MRKYKKIVQIIPLDKRRFKLLYIFSLLMIFCLFGRLVNLQVFNASDLKKKARLIQSSTTN CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHH ALKKRRSIVDRNNRLIAYDKPLYKLWAHPRYFNFPGDSIKEVRSIEEVAKKLSPILDIKD HHHHHHHHHCCCCEEEEECCHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCH KKLLEKFNDKSSGIMLLDKISEEKAEKIKNLQISGLDLFKYSQRYYPQGELYSNLVGFVN HHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCEECCCHHHHHHHHCCCCHHHHHHHHHCCC DENKGSAGLELHLDNQIKVFNKSNLIKRGGDGTPLPDNSAPGDFIYDYKSLGLTIDSKLQ CCCCCCCCEEEEECCEEEEECCCCHHHCCCCCCCCCCCCCCCCEEEEHHHCCEEEHHHHH KASLNALSKQISKWKAKKGFAMVMDVNNGQILSLVAVPSYDPNKFWQYDSELFRGWYSQD HHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHH LFEPGSTFKPINLALALEEKVIQKDGLVEDSGKINVGGWTLSNWDKKGNGYIDYPKVLQV HCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCEEEECCEEECCCCCCCCCCCCCCHHEEE SSNVGMVKIMQNLEPRVYWDWLKNLGINKNLETDLYESTAGQLKRKDLFVNQSIEPAVAS CCCCCHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCHHHHH FGKGFSISPLKLAQLHAALANGGFEVTPHVTSNFKERVNQNSKKQFFSPEVSKIVLEWME CCCCCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHH SVVDKGSGSGVKIEGYRIAGKTGTSQKALNGVYTSKKVCSFVATLPVNDPKYVVLVVVDE HHHCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC PSKLYAYGSTVAVPVAKEIIESLIVIEKIPPKVKGHGMIVKKL CCEEEEECCEEEHHHHHHHHHHHHHHHCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8289242; 9384377; 8244929; 8436954 [H]