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The map label for this gene is 78778863

Identifier: 78778863

GI number: 78778863

Start: 448151

End: 448870

Strand: Reverse

Name: 78778863

Synonym: PMT9312_0478

Alternate gene names: NA

Gene position: 448870-448151 (Counterclockwise)

Preceding gene: 78778869

Following gene: 78778861

Centisome position: 26.26

GC content: 28.61

Gene sequence:

>720_bases
ATGATAAATTCAATGAAAAACGAAAAAACTGTTGGGATTACTGGAGCCTCCGGCGCACTAGGGAAAGAACTAACGAAGTT
GTTTCGTCAGAAAGGATATAAAGTAATTGGATTTACTCATAGTAAAACTGATTCTGAAGTAAATCTTGAATCCCCTAATA
AATGGATTAAATGGGAATGCGGGAAAGAATCGGCACTAAAAAAGCATTTAAAGAAGATAGATATTTTAATTTTGAACCAC
GGCATTTATAATTTAAGTCGAGAAAACAGCAATTATGAAAATTCAATAGAAATAAATGCATTAAGCAATTTCAAATTTTT
AAATTTGTTTGAAGATATTGCCCGAAAAAATGAGTCATTAATAAAAAAAGAGATTTGGATAAACACATCTGAAGCAGAAA
TATTGCCAGCGCTTAATCCTTCATATGAGATAAGTAAATCCCTTATTGGTCAATTAGTTTCATTCAAAAAAAATCTTCTG
GACAAAGATACTAAGAAAAAATTAATTATTAAGAAAATCATCTTAGGGCCTTTTAAGTCAGAACTAAATCCTATCGGGAT
TATGAGTGCCAAATTTGTGTCTAAAAAAATTTATGACTTAGCTAATTCAAAAATTTATTTAATAATAATTAGTCCAAACC
CTTTAACCTACATACTGTTCCCACTAAAAGAATTTTTTAATTTTTTGTATTGCCAAATTATCTATAAATACAAATCATAG

Upstream 100 bases:

>100_bases
TTTAGAACTAAACAAATATTTATTTATGAGTTTTAAGCAAATAAATATTTTTTAGGTAAATTTATTTTAGTGCTTTGATA
TTTTATCAAAATCAGACAAA

Downstream 100 bases:

>100_bases
TGCCTAGAAATCTCTATCTGTCAATATTTCAATTCCATCTTTTAAAACAACTATTGTATGCTCCCATTGCGCAGATAATT
TTCCATCTTTTGTTATGACT

Product: short chain dehydrogenase

Products: NA

Alternate protein names: Bifunctional Sterol Desaturase/Short Chain Dehydrogenase; Oxidoreductase Short Chain Dehydrogenase/Reductase Family; Short-Chain Dehydrogenase; Short-Chain Dehydrogenase/Reductase Family Protein; Fatty Acid Hydroxylase; Dehydrogenases With Different Specificities; NAD Dependent Epimerase/Dehydratase Family

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MINSMKNEKTVGITGASGALGKELTKLFRQKGYKVIGFTHSKTDSEVNLESPNKWIKWECGKESALKKHLKKIDILILNH
GIYNLSRENSNYENSIEINALSNFKFLNLFEDIARKNESLIKKEIWINTSEAEILPALNPSYEISKSLIGQLVSFKKNLL
DKDTKKKLIIKKIILGPFKSELNPIGIMSAKFVSKKIYDLANSKIYLIIISPNPLTYILFPLKEFFNFLYCQIIYKYKS

Sequences:

>Translated_239_residues
MINSMKNEKTVGITGASGALGKELTKLFRQKGYKVIGFTHSKTDSEVNLESPNKWIKWECGKESALKKHLKKIDILILNH
GIYNLSRENSNYENSIEINALSNFKFLNLFEDIARKNESLIKKEIWINTSEAEILPALNPSYEISKSLIGQLVSFKKNLL
DKDTKKKLIIKKIILGPFKSELNPIGIMSAKFVSKKIYDLANSKIYLIIISPNPLTYILFPLKEFFNFLYCQIIYKYKS
>Mature_239_residues
MINSMKNEKTVGITGASGALGKELTKLFRQKGYKVIGFTHSKTDSEVNLESPNKWIKWECGKESALKKHLKKIDILILNH
GIYNLSRENSNYENSIEINALSNFKFLNLFEDIARKNESLIKKEIWINTSEAEILPALNPSYEISKSLIGQLVSFKKNLL
DKDTKKKLIIKKIILGPFKSELNPIGIMSAKFVSKKIYDLANSKIYLIIISPNPLTYILFPLKEFFNFLYCQIIYKYKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27434; Mature: 27434

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINSMKNEKTVGITGASGALGKELTKLFRQKGYKVIGFTHSKTDSEVNLESPNKWIKWEC
CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCCCCEEEEEC
GKESALKKHLKKIDILILNHGIYNLSRENSNYENSIEINALSNFKFLNLFEDIARKNESL
CCHHHHHHHHHHHEEEEEECCEEEECCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
IKKEIWINTSEAEILPALNPSYEISKSLIGQLVSFKKNLLDKDTKKKLIIKKIILGPFKS
HHHHHEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHH
ELNPIGIMSAKFVSKKIYDLANSKIYLIIISPNPLTYILFPLKEFFNFLYCQIIYKYKS
CCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MINSMKNEKTVGITGASGALGKELTKLFRQKGYKVIGFTHSKTDSEVNLESPNKWIKWEC
CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCCCCEEEEEC
GKESALKKHLKKIDILILNHGIYNLSRENSNYENSIEINALSNFKFLNLFEDIARKNESL
CCHHHHHHHHHHHEEEEEECCEEEECCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
IKKEIWINTSEAEILPALNPSYEISKSLIGQLVSFKKNLLDKDTKKKLIIKKIILGPFKS
HHHHHEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHH
ELNPIGIMSAKFVSKKIYDLANSKIYLIIISPNPLTYILFPLKEFFNFLYCQIIYKYKS
CCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA