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The map label for this gene is csd [H]

Identifier: 78778795

GI number: 78778795

Start: 389459

End: 390634

Strand: Reverse

Name: csd [H]

Synonym: PMT9312_0410

Alternate gene names: 78778795

Gene position: 390634-389459 (Counterclockwise)

Preceding gene: 78778796

Following gene: 78778790

Centisome position: 22.85

GC content: 29.68

Gene sequence:

>1176_bases
ATGAAAAATAATCTAAGAGATCAAATACCAGCATTAAAAAATAAGTATTATTTCAACTATGGTGGTCAAGGACCATTACC
AAAATCTTCTCTAGAAGCAATGGTTAAAACTTGGGAAATTATCCAAGATTTAGGACCATTTACCAATGATATGTGGCCTT
TTATTTACAAAGAAATATTGACCACAAAAAGAATCATTGCACAAAAATTAGGTGTCAATTCAAAGAATGTAGCTTTAACC
GAGAATATCTCTTCCGGTATGATTTTGCCCTTTTGGGGAATAAAAGTAGAAGAGGGAGAGGAGTTGTTAATAAGTGACTG
TGAACATCCTGGAGTAGTAGCTGCAAGTCGAGAATTTTGCAGAAGAAATAAATTAATATTCAAAATTTTACCAATCCAAA
AAATTAAAAATCTAAATGACGAAAATATAATTCTAGAGATTTTAAAAAATCTAAATAGTCAGACTAAGATCCTAATTATT
TCACATATTTTATGGAACTTTGGATATAAAATTCCTTTAAAACAAATTTCTATCGAATTAAAAAATAATCGAGAAAACTC
TTATCTACTTGTTGATGGTGCTCAAACCTTTGGGCACATAAAAATCGAAGAAGAAGTTTTTTATTCTGATTTATATTCAA
TAACTTCTCACAAATGGGCATGTGGTCCAGAAGGACTTGGAGCCATTTATGTCTCAGATAGATTTATTCATGAAACAGAT
CCAACAATAATTGGTTGGAAGTCATTAAAAAAAGAACAAGGAATTTATGAGCCTTCAGATAATCTTTTTCATGATGATGC
ACGAAAGTTTGAAGTGGCCACCTCTTGTATTCCTTTACTTGCAGGGCTGCGCACTTCTTTAAATCTTTTGGATGAAGAAT
ACCCTGAAAAAGAAAAAAGCGAACATATTAAAAGGTTAAGTGAAAAACTTTGGGATGAATTAAATCAATTAAAAGAAATT
GAATTAATTTTAGACAAAAAATACTTAAATGGGATAGTTAGTTTTAATATCGAAAATCTTGAAAATAAATATGAATTTGT
AAAGAAACTTGGAGAAAAAAAAATTTGGATTAGAGTTTTAGAAGATCCAAAATGGTTTAGAGCATGTGTACATCAAATGA
CTACAGAAGCTGAGATTGATTTGCTTGCTAAAGAAGTAAAAAAAATATTGACTTAA

Upstream 100 bases:

>100_bases
TGAACCTTGGAAAGTAATTGAGGATATTGAATTTAGAACAGTAACTTTAGTAGGCAATATTTAAAAAATTCAAGAGTTTA
AAAATATAATTTAAATTCCT

Downstream 100 bases:

>100_bases
ATATCTATTGATATAAAGAAAAAATTTAGTTTACCAAGGTATATCCGAGCTGTCCCATGCAATAAATTTTCCAGAAGATG
CTGGAGTTTGATTTTTAATA

Product: putative L-cysteine/cystine lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MKNNLRDQIPALKNKYYFNYGGQGPLPKSSLEAMVKTWEIIQDLGPFTNDMWPFIYKEILTTKRIIAQKLGVNSKNVALT
ENISSGMILPFWGIKVEEGEELLISDCEHPGVVAASREFCRRNKLIFKILPIQKIKNLNDENIILEILKNLNSQTKILII
SHILWNFGYKIPLKQISIELKNNRENSYLLVDGAQTFGHIKIEEEVFYSDLYSITSHKWACGPEGLGAIYVSDRFIHETD
PTIIGWKSLKKEQGIYEPSDNLFHDDARKFEVATSCIPLLAGLRTSLNLLDEEYPEKEKSEHIKRLSEKLWDELNQLKEI
ELILDKKYLNGIVSFNIENLENKYEFVKKLGEKKIWIRVLEDPKWFRACVHQMTTEAEIDLLAKEVKKILT

Sequences:

>Translated_391_residues
MKNNLRDQIPALKNKYYFNYGGQGPLPKSSLEAMVKTWEIIQDLGPFTNDMWPFIYKEILTTKRIIAQKLGVNSKNVALT
ENISSGMILPFWGIKVEEGEELLISDCEHPGVVAASREFCRRNKLIFKILPIQKIKNLNDENIILEILKNLNSQTKILII
SHILWNFGYKIPLKQISIELKNNRENSYLLVDGAQTFGHIKIEEEVFYSDLYSITSHKWACGPEGLGAIYVSDRFIHETD
PTIIGWKSLKKEQGIYEPSDNLFHDDARKFEVATSCIPLLAGLRTSLNLLDEEYPEKEKSEHIKRLSEKLWDELNQLKEI
ELILDKKYLNGIVSFNIENLENKYEFVKKLGEKKIWIRVLEDPKWFRACVHQMTTEAEIDLLAKEVKKILT
>Mature_391_residues
MKNNLRDQIPALKNKYYFNYGGQGPLPKSSLEAMVKTWEIIQDLGPFTNDMWPFIYKEILTTKRIIAQKLGVNSKNVALT
ENISSGMILPFWGIKVEEGEELLISDCEHPGVVAASREFCRRNKLIFKILPIQKIKNLNDENIILEILKNLNSQTKILII
SHILWNFGYKIPLKQISIELKNNRENSYLLVDGAQTFGHIKIEEEVFYSDLYSITSHKWACGPEGLGAIYVSDRFIHETD
PTIIGWKSLKKEQGIYEPSDNLFHDDARKFEVATSCIPLLAGLRTSLNLLDEEYPEKEKSEHIKRLSEKLWDELNQLKEI
ELILDKKYLNGIVSFNIENLENKYEFVKKLGEKKIWIRVLEDPKWFRACVHQMTTEAEIDLLAKEVKKILT

Specific function: Cysteine Desulfurases Mobilize The Sulfur From L- Cysteine To Yield L-Alanine, An Essential Step In Sulfur Metabolism For Biosynthesis Of A Variety Of Sulfur-Containing Biomolecules. Component Of The Suf Operon, Which Is Activated And Required Under Speci

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787970, Length=324, Percent_Identity=23.4567901234568, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 45330; Mature: 45330

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNNLRDQIPALKNKYYFNYGGQGPLPKSSLEAMVKTWEIIQDLGPFTNDMWPFIYKEIL
CCCCHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
TTKRIIAQKLGVNSKNVALTENISSGMILPFWGIKVEEGEELLISDCEHPGVVAASREFC
HHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECEEECCCCHHHHCCCCCCCEEHHHHHHH
RRNKLIFKILPIQKIKNLNDENIILEILKNLNSQTKILIISHILWNFGYKIPLKQISIEL
HCCCEEEEEECHHHHCCCCCCHHHHHHHHCCCCCCEEEHHHHHHHHCCCCCCHHHEEEEE
KNNRENSYLLVDGAQTFGHIKIEEEVFYSDLYSITSHKWACGPEGLGAIYVSDRFIHETD
ECCCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEECCC
PTIIGWKSLKKEQGIYEPSDNLFHDDARKFEVATSCIPLLAGLRTSLNLLDEEYPEKEKS
CCEEEHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
EHIKRLSEKLWDELNQLKEIELILDKKYLNGIVSFNIENLENKYEFVKKLGEKKIWIRVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHCCCEEEEEEE
EDPKWFRACVHQMTTEAEIDLLAKEVKKILT
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKNNLRDQIPALKNKYYFNYGGQGPLPKSSLEAMVKTWEIIQDLGPFTNDMWPFIYKEIL
CCCCHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
TTKRIIAQKLGVNSKNVALTENISSGMILPFWGIKVEEGEELLISDCEHPGVVAASREFC
HHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECEEECCCCHHHHCCCCCCCEEHHHHHHH
RRNKLIFKILPIQKIKNLNDENIILEILKNLNSQTKILIISHILWNFGYKIPLKQISIEL
HCCCEEEEEECHHHHCCCCCCHHHHHHHHCCCCCCEEEHHHHHHHHCCCCCCHHHEEEEE
KNNRENSYLLVDGAQTFGHIKIEEEVFYSDLYSITSHKWACGPEGLGAIYVSDRFIHETD
ECCCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEECCC
PTIIGWKSLKKEQGIYEPSDNLFHDDARKFEVATSCIPLLAGLRTSLNLLDEEYPEKEKS
CCEEEHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
EHIKRLSEKLWDELNQLKEIELILDKKYLNGIVSFNIENLENKYEFVKKLGEKKIWIRVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHCCCEEEEEEE
EDPKWFRACVHQMTTEAEIDLLAKEVKKILT
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]