| Definition | Prochlorococcus marinus str. MIT 9312, complete genome. |
|---|---|
| Accession | NC_007577 |
| Length | 1,709,204 |
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The map label for this gene is selD [H]
Identifier: 78778689
GI number: 78778689
Start: 287941
End: 290112
Strand: Direct
Name: selD [H]
Synonym: PMT9312_0304
Alternate gene names: 78778689
Gene position: 287941-290112 (Clockwise)
Preceding gene: 78778687
Following gene: 78778692
Centisome position: 16.85
GC content: 29.93
Gene sequence:
>2172_bases ATGACTTTTAATCATCTGGTACTAATTGGAGGAGGACACTCAAATGTTTCTTTATTAAAGAAATGGTTAATGTTTCCGAA ATTAATGCCAGAAATTCCTGTTTCAATTATATCTAGAGATTCTCATTTGGTTTATTCGGCGATATTCCCATCGGTAATTT CAAAATCAATCACTATAGAAGAGAGTTTAATTGATATAAAATCTTTAGCAAAAAATGCAAAAGTATCTTTTATAGAAGAA GAAGTAAAGGATATTGATTTCAATTTAAAGAAAATTGTTTTAGGTAATAGACCTTCAGTTAATTATTCGAAGTTGGTTCT TAATTATGGAAGTCAAACAATAATTCCAAAAGAATTTGAATCACTAGTTAAAAATCGAAATGCTTTTTCAATTAAACCTT TTTTAAGGGCTTATGACTCAATACTAAAAGAGGACATTTTTGATTCAGTTAATGAACTTCCATTTGTAATTGTTGGGAGT GGCCTTGCTGCAATTGAAGTATCATATGCTTTGAGAAAAAGATGGGGAGATAGACCTTTAAAACTATTATGTGATTCAAG AAAAATTAATAATACAATTCTAAAAAGTTTACGGAATTCCAATATTGATTTAGTTGAAAAACTTAATTTTGATTATGGCA AGATTCTTTTATGTACTGGAAATACATCTCCTTTATGGGCAAACAAAAAATTATTAGATTCGGATTCTCATGGCAGAATA ATCACAAATCAGAATTTGCAGATAAAAAGTTTCTCTGGAATCTTTGCAGTCGGTGATTGTGCAGTTGTAGGTTCAGCAAA AAGACCAGCATCGGGAGTTTTTGCAGTAAAAGTTGTAAATACATTAGTCCAAAATCTAAAAAAAGATATAGAAGGGAGAT CATTAAAAAAGTGGTTTCCTCAAAAGATCGGATTGCAAATAGTAAATATATTTCCAAGCCATCATCCAAAGGCATTTGCT ATTTATCGCAATTTTGTTTTCGGCCCTTCTTTTCTTTTTTGGATTTTAAAGTATAAGATTGATCTCAACTTTATTAAAAA GTTCAGATCAAAAAGGCTAATTATGAAAAGTAGTGAAAAAAATATTTCATTGAATGATTGCAGAGGATGTGCAGCTAAAA TTCCTCAGTTTGTTTTGAATAAATCATTAATAAATTCTAATTTAAGTTCTTTTGCCTCATCACCTGAAGATTCAGTTGAG ATATATCAAAATGGTCAAGATATTATCTTGCAAAGTGTAGATGGATTTCCTGCTTTGGTAAGTGATCCATGGCTTAATGC AAAAATTACTACTTTGCATGCTTGCTCAGATTTGTGGGCATGCGGAGCAAAACTTGCATCCGCGCAGGCTTTAATTTCAT TACCAAAAGTTGAAAGGGAATTTCAGAGTTACCTCTTTTCTCAATCACTTCAAGGTATTAAATCAACAGTTGAGGATCAT GGAGGTGAATTACTTGGAGGCCATACTTTCGAGGCAAGAAGTTTAGTAAATAAACCTTATTCATTAGGAATAGATATTTC TTTAACAGTTCAAGGTATTTTAAAAAATGGAGCAAAACCATGGCTTAAATCTGGAATGAATATTGGAGATATTCTCATGA TGTCTAGACCCCTGGGCGTTGGGATTTACTTTGCCGGTCAAATGCAAAATATTAATATGCTAGGTAGTTCTTCTGAAATA ATTAATAATTTATTAAAGAGTCAGCAATATTTGATTGATGAAATTTATCTTTTTCAAAATCAATTTAAAGAATCATTAGT CAATGCTGCGACTGACATTACTGGATATGGATTTATTGGACATCTTAAAGAAATGGTTGAATCATCTAATTTATATAGGC AAAACAATCATCTTGAGCCACTAAAAGTTTTATTAGATTTATTTGCATTTAAAGCTTATCCTGGAGTATTTGATTTAATA AGAAAAGATGTTAAAAGTACTTTCTTTGAATCTAATAGAGAAATTTTTGACAAAATTTATAAATTAAATAAGCAAAAAAG AATAATTAATTTTTTAAACGAAAATTCATTAGATCATCAGACTTTTAACGAGAGAATATCATTACTATTAGATCCTCAAA CATGTGGACCCTTGTTGATAAGTTGCAATCCTAAATATGAAAATGTTCTAAAGGATAAATGGTACAAGGTTGGAGAAGTT TTAAAAATGTAA
Upstream 100 bases:
>100_bases GTACTCTATTTGATCCATTGAATAAAATCCACTTCCACCAATCACTCCTAATCTTGATTTTTCAATTGGTAATAAATGTT CTTTATTCATAGTGATGTAA
Downstream 100 bases:
>100_bases TTAATTTCTATTGAATTTGTCAATTTCTAAATATCTTAATCTTTTGATTTCCTTTCCCATCTCCTTCCCTGGATCCCATC CTTCTTTTTTTAATGTTTCT
Product: selenide, water dikinase
Products: NA
Alternate protein names: Selenium donor protein; Selenophosphate synthase [H]
Number of amino acids: Translated: 723; Mature: 722
Protein sequence:
>723_residues MTFNHLVLIGGGHSNVSLLKKWLMFPKLMPEIPVSIISRDSHLVYSAIFPSVISKSITIEESLIDIKSLAKNAKVSFIEE EVKDIDFNLKKIVLGNRPSVNYSKLVLNYGSQTIIPKEFESLVKNRNAFSIKPFLRAYDSILKEDIFDSVNELPFVIVGS GLAAIEVSYALRKRWGDRPLKLLCDSRKINNTILKSLRNSNIDLVEKLNFDYGKILLCTGNTSPLWANKKLLDSDSHGRI ITNQNLQIKSFSGIFAVGDCAVVGSAKRPASGVFAVKVVNTLVQNLKKDIEGRSLKKWFPQKIGLQIVNIFPSHHPKAFA IYRNFVFGPSFLFWILKYKIDLNFIKKFRSKRLIMKSSEKNISLNDCRGCAAKIPQFVLNKSLINSNLSSFASSPEDSVE IYQNGQDIILQSVDGFPALVSDPWLNAKITTLHACSDLWACGAKLASAQALISLPKVEREFQSYLFSQSLQGIKSTVEDH GGELLGGHTFEARSLVNKPYSLGIDISLTVQGILKNGAKPWLKSGMNIGDILMMSRPLGVGIYFAGQMQNINMLGSSSEI INNLLKSQQYLIDEIYLFQNQFKESLVNAATDITGYGFIGHLKEMVESSNLYRQNNHLEPLKVLLDLFAFKAYPGVFDLI RKDVKSTFFESNREIFDKIYKLNKQKRIINFLNENSLDHQTFNERISLLLDPQTCGPLLISCNPKYENVLKDKWYKVGEV LKM
Sequences:
>Translated_723_residues MTFNHLVLIGGGHSNVSLLKKWLMFPKLMPEIPVSIISRDSHLVYSAIFPSVISKSITIEESLIDIKSLAKNAKVSFIEE EVKDIDFNLKKIVLGNRPSVNYSKLVLNYGSQTIIPKEFESLVKNRNAFSIKPFLRAYDSILKEDIFDSVNELPFVIVGS GLAAIEVSYALRKRWGDRPLKLLCDSRKINNTILKSLRNSNIDLVEKLNFDYGKILLCTGNTSPLWANKKLLDSDSHGRI ITNQNLQIKSFSGIFAVGDCAVVGSAKRPASGVFAVKVVNTLVQNLKKDIEGRSLKKWFPQKIGLQIVNIFPSHHPKAFA IYRNFVFGPSFLFWILKYKIDLNFIKKFRSKRLIMKSSEKNISLNDCRGCAAKIPQFVLNKSLINSNLSSFASSPEDSVE IYQNGQDIILQSVDGFPALVSDPWLNAKITTLHACSDLWACGAKLASAQALISLPKVEREFQSYLFSQSLQGIKSTVEDH GGELLGGHTFEARSLVNKPYSLGIDISLTVQGILKNGAKPWLKSGMNIGDILMMSRPLGVGIYFAGQMQNINMLGSSSEI INNLLKSQQYLIDEIYLFQNQFKESLVNAATDITGYGFIGHLKEMVESSNLYRQNNHLEPLKVLLDLFAFKAYPGVFDLI RKDVKSTFFESNREIFDKIYKLNKQKRIINFLNENSLDHQTFNERISLLLDPQTCGPLLISCNPKYENVLKDKWYKVGEV LKM >Mature_722_residues TFNHLVLIGGGHSNVSLLKKWLMFPKLMPEIPVSIISRDSHLVYSAIFPSVISKSITIEESLIDIKSLAKNAKVSFIEEE VKDIDFNLKKIVLGNRPSVNYSKLVLNYGSQTIIPKEFESLVKNRNAFSIKPFLRAYDSILKEDIFDSVNELPFVIVGSG LAAIEVSYALRKRWGDRPLKLLCDSRKINNTILKSLRNSNIDLVEKLNFDYGKILLCTGNTSPLWANKKLLDSDSHGRII TNQNLQIKSFSGIFAVGDCAVVGSAKRPASGVFAVKVVNTLVQNLKKDIEGRSLKKWFPQKIGLQIVNIFPSHHPKAFAI YRNFVFGPSFLFWILKYKIDLNFIKKFRSKRLIMKSSEKNISLNDCRGCAAKIPQFVLNKSLINSNLSSFASSPEDSVEI YQNGQDIILQSVDGFPALVSDPWLNAKITTLHACSDLWACGAKLASAQALISLPKVEREFQSYLFSQSLQGIKSTVEDHG GELLGGHTFEARSLVNKPYSLGIDISLTVQGILKNGAKPWLKSGMNIGDILMMSRPLGVGIYFAGQMQNINMLGSSSEII NNLLKSQQYLIDEIYLFQNQFKESLVNAATDITGYGFIGHLKEMVESSNLYRQNNHLEPLKVLLDLFAFKAYPGVFDLIR KDVKSTFFESNREIFDKIYKLNKQKRIINFLNENSLDHQTFNERISLLLDPQTCGPLLISCNPKYENVLKDKWYKVGEVL KM
Specific function: Synthesizes selenophosphate from selenide and ATP [H]
COG id: COG1252
COG function: function code C; NADH dehydrogenase, FAD-containing subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the selenophosphate synthase 1 family. Class I subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788062, Length=364, Percent_Identity=23.9010989010989, Blast_Score=83, Evalue=8e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000728 - InterPro: IPR010918 - InterPro: IPR016188 - InterPro: IPR004536 - InterPro: IPR023061 [H]
Pfam domain/function: PF00586 AIRS; PF02769 AIRS_C [H]
EC number: =2.7.9.3 [H]
Molecular weight: Translated: 81397; Mature: 81265
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFNHLVLIGGGHSNVSLLKKWLMFPKLMPEIPVSIISRDSHLVYSAIFPSVISKSITIE CCCCEEEEEECCCCCHHHHHHHHHHHHHCHHCCHHHHCCCCCHHHHHHHHHHHHCCCCHH ESLIDIKSLAKNAKVSFIEEEVKDIDFNLKKIVLGNRPSVNYSKLVLNYGSQTIIPKEFE HHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHEEECCCCCCCHHHHH SLVKNRNAFSIKPFLRAYDSILKEDIFDSVNELPFVIVGSGLAAIEVSYALRKRWGDRPL HHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCH KLLCDSRKINNTILKSLRNSNIDLVEKLNFDYGKILLCTGNTSPLWANKKLLDSDSHGRI HHHCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEE ITNQNLQIKSFSGIFAVGDCAVVGSAKRPASGVFAVKVVNTLVQNLKKDIEGRSLKKWFP EECCCEEEEECCCEEEECCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCC QKIGLQIVNIFPSHHPKAFAIYRNFVFGPSFLFWILKYKIDLNFIKKFRSKRLIMKSSEK HHHCEEEEEECCCCCCCEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC NISLNDCRGCAAKIPQFVLNKSLINSNLSSFASSPEDSVEIYQNGQDIILQSVDGFPALV CCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHCCCEEEEECCCCCCCHH SDPWLNAKITTLHACSDLWACGAKLASAQALISLPKVEREFQSYLFSQSLQGIKSTVEDH CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GGELLGGHTFEARSLVNKPYSLGIDISLTVQGILKNGAKPWLKSGMNIGDILMMSRPLGV CCCEECCCCHHHHHHHCCCCEECCEEEEEHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCE GIYFAGQMQNINMLGSSSEIINNLLKSQQYLIDEIYLFQNQFKESLVNAATDITGYGFIG EEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH HLKEMVESSNLYRQNNHLEPLKVLLDLFAFKAYPGVFDLIRKDVKSTFFESNREIFDKIY HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHH KLNKQKRIINFLNENSLDHQTFNERISLLLDPQTCGPLLISCNPKYENVLKDKWYKVGEV HHCHHHHHHHHHCCCCCCHHHHHHHHEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHH LKM HCC >Mature Secondary Structure TFNHLVLIGGGHSNVSLLKKWLMFPKLMPEIPVSIISRDSHLVYSAIFPSVISKSITIE CCCEEEEEECCCCCHHHHHHHHHHHHHCHHCCHHHHCCCCCHHHHHHHHHHHHCCCCHH ESLIDIKSLAKNAKVSFIEEEVKDIDFNLKKIVLGNRPSVNYSKLVLNYGSQTIIPKEFE HHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHEEECCCCCCCHHHHH SLVKNRNAFSIKPFLRAYDSILKEDIFDSVNELPFVIVGSGLAAIEVSYALRKRWGDRPL HHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCH KLLCDSRKINNTILKSLRNSNIDLVEKLNFDYGKILLCTGNTSPLWANKKLLDSDSHGRI HHHCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEE ITNQNLQIKSFSGIFAVGDCAVVGSAKRPASGVFAVKVVNTLVQNLKKDIEGRSLKKWFP EECCCEEEEECCCEEEECCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCC QKIGLQIVNIFPSHHPKAFAIYRNFVFGPSFLFWILKYKIDLNFIKKFRSKRLIMKSSEK HHHCEEEEEECCCCCCCEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC NISLNDCRGCAAKIPQFVLNKSLINSNLSSFASSPEDSVEIYQNGQDIILQSVDGFPALV CCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHCCCEEEEECCCCCCCHH SDPWLNAKITTLHACSDLWACGAKLASAQALISLPKVEREFQSYLFSQSLQGIKSTVEDH CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GGELLGGHTFEARSLVNKPYSLGIDISLTVQGILKNGAKPWLKSGMNIGDILMMSRPLGV CCCEECCCCHHHHHHHCCCCEECCEEEEEHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCE GIYFAGQMQNINMLGSSSEIINNLLKSQQYLIDEIYLFQNQFKESLVNAATDITGYGFIG EEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH HLKEMVESSNLYRQNNHLEPLKVLLDLFAFKAYPGVFDLIRKDVKSTFFESNREIFDKIY HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHH KLNKQKRIINFLNENSLDHQTFNERISLLLDPQTCGPLLISCNPKYENVLKDKWYKVGEV HHCHHHHHHHHHCCCCCCHHHHHHHHEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHH LKM HCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA