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The map label for this gene is 78778683

Identifier: 78778683

GI number: 78778683

Start: 285106

End: 286122

Strand: Direct

Name: 78778683

Synonym: PMT9312_0298

Alternate gene names: NA

Gene position: 285106-286122 (Clockwise)

Preceding gene: 78778682

Following gene: 78778684

Centisome position: 16.68

GC content: 36.38

Gene sequence:

>1017_bases
ATGAAAAAAATTATTACCAGTTTTCCCAATCTTCTCTTATCTATACTTCTTTGCTTCGTTTTAAGTAGTTGTTCATCTAC
AGGAGTGAAGATGAGTGATAGTAGCCCTTGGAAAACAATTCAGTTTCAGGATCAGGCAAATGCCCTAGATGTTGATTTTA
TAGATAATAATAATGGATTTTTAGTAGGTTCTAATAGACTTATTATGGAATCAAATGATGGGGGAGAAACGTGGGAGAAA
AGGAATTTAGATTTACCAAGTGAAGAGAACTTTCGTCTTATAGATATTGATTTTAAAGGTCAAGAGGGATGGTTGATAGG
CCAGCCCTCATTGGTTATGCATACACTTGATGCGGGGAAAAATTGGACTCGTTTATCTCTAGGTAACAAATTGCCAGGCC
AGCCATATCTAATAACGACTGTTGATGATGGGGTTGCGGAATTGGCTACCACTGCAGGTGCTATCTATCAAACATCAGAT
AGTGGTGAATCATGGAATGCAAAGGTTCTTGACGCATCTGGTTCAGGTGGTGTAAGAGATTTGAGAAGAACTGATAAAGG
AGATTATGTCAGCGTAAGTAGTCTGGGTAATTTCTTTTCTACTTTGGAAAATGATAGTAATTCATGGATCGCTCATCAAA
GAGCTAGTAGCAAAAGAGTTCAAAGTATTGGTTTTAATCCAGAAGGAAGTTTATGGATGCTTTCTAGAGGGGCAGAAATT
AGATTTAATGAAGATACTAATGACCTAGAAAATTGGTCTAAGCCTATTATACCAATTCTTAATGGATACAATTATCTAGA
TATGGGATGGGATCCAAATGGTGATATATGGGCTGGCGGGGGTAATGGAACTTTAATAGTAAGTAAAGATCAAGGTAAAA
CTTGGAATAAATATCCTATTGCTGCTGAATTGCCAACAAACTACATTAAAATAGTTTTTCTTGATAAGGAGGCTTTAGAC
AATCAAAAAGGATTTGTACTTGGCGAGCGTGGTTATATCCTTAAATGGAATAGCTAA

Upstream 100 bases:

>100_bases
TAGCTTGCCTTCTGGCCAAAAAAATATATTAATTTTTGGAGGTTTGGCTTTTGCCGCAGCATGTTTCCTTTCTTTGTACT
CTTTGCATTAATATAGATAA

Downstream 100 bases:

>100_bases
CTTTAAATAACTTGAGTTAATAGTAAAAAAAAATTAATTTTTGAAAGATTTAGCAACTGTCTGTAACCAACCTGTTAATT
TCTTCGCGAACTTATGATTT

Product: Ycf48-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MKKIITSFPNLLLSILLCFVLSSCSSTGVKMSDSSPWKTIQFQDQANALDVDFIDNNNGFLVGSNRLIMESNDGGETWEK
RNLDLPSEENFRLIDIDFKGQEGWLIGQPSLVMHTLDAGKNWTRLSLGNKLPGQPYLITTVDDGVAELATTAGAIYQTSD
SGESWNAKVLDASGSGGVRDLRRTDKGDYVSVSSLGNFFSTLENDSNSWIAHQRASSKRVQSIGFNPEGSLWMLSRGAEI
RFNEDTNDLENWSKPIIPILNGYNYLDMGWDPNGDIWAGGGNGTLIVSKDQGKTWNKYPIAAELPTNYIKIVFLDKEALD
NQKGFVLGERGYILKWNS

Sequences:

>Translated_338_residues
MKKIITSFPNLLLSILLCFVLSSCSSTGVKMSDSSPWKTIQFQDQANALDVDFIDNNNGFLVGSNRLIMESNDGGETWEK
RNLDLPSEENFRLIDIDFKGQEGWLIGQPSLVMHTLDAGKNWTRLSLGNKLPGQPYLITTVDDGVAELATTAGAIYQTSD
SGESWNAKVLDASGSGGVRDLRRTDKGDYVSVSSLGNFFSTLENDSNSWIAHQRASSKRVQSIGFNPEGSLWMLSRGAEI
RFNEDTNDLENWSKPIIPILNGYNYLDMGWDPNGDIWAGGGNGTLIVSKDQGKTWNKYPIAAELPTNYIKIVFLDKEALD
NQKGFVLGERGYILKWNS
>Mature_338_residues
MKKIITSFPNLLLSILLCFVLSSCSSTGVKMSDSSPWKTIQFQDQANALDVDFIDNNNGFLVGSNRLIMESNDGGETWEK
RNLDLPSEENFRLIDIDFKGQEGWLIGQPSLVMHTLDAGKNWTRLSLGNKLPGQPYLITTVDDGVAELATTAGAIYQTSD
SGESWNAKVLDASGSGGVRDLRRTDKGDYVSVSSLGNFFSTLENDSNSWIAHQRASSKRVQSIGFNPEGSLWMLSRGAEI
RFNEDTNDLENWSKPIIPILNGYNYLDMGWDPNGDIWAGGGNGTLIVSKDQGKTWNKYPIAAELPTNYIKIVFLDKEALD
NQKGFVLGERGYILKWNS

Specific function: Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity

COG id: COG4447

COG function: function code R; Uncharacterized protein related to plant photosystem II stability/assembly factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 BNR repeats

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YC48L_PROM9 (Q31CN6)

Other databases:

- EMBL:   CP000111
- RefSeq:   YP_396795.1
- ProteinModelPortal:   Q31CN6
- STRING:   Q31CN6
- GeneID:   3765086
- GenomeReviews:   CP000111_GR
- KEGG:   pmi:PMT9312_0298
- eggNOG:   COG4447
- HOGENOM:   HBG285032
- OMA:   GFLVGSN
- ProtClustDB:   PRK13684
- BioCyc:   PMAR74546:PMT9312_0298-MONOMER
- HAMAP:   MF_01348
- InterPro:   IPR002860
- InterPro:   IPR016705
- InterPro:   IPR015943
- Gene3D:   G3DSA:2.130.10.10
- PIRSF:   PIRSF017875

Pfam domain/function: PF02012 BNR

EC number: NA

Molecular weight: Translated: 37425; Mature: 37425

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIITSFPNLLLSILLCFVLSSCSSTGVKMSDSSPWKTIQFQDQANALDVDFIDNNNGF
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEECCCCCEEEEEEEECCCCE
LVGSNRLIMESNDGGETWEKRNLDLPSEENFRLIDIDFKGQEGWLIGQPSLVMHTLDAGK
EEECCEEEEECCCCCCCHHHCCCCCCCCCCEEEEEEEECCCCCEEECCCCEEEEEECCCC
NWTRLSLGNKLPGQPYLITTVDDGVAELATTAGAIYQTSDSGESWNAKVLDASGSGGVRD
CEEEEECCCCCCCCCEEEEECCCCHHHHHHHCCEEEEECCCCCCCCEEEEECCCCCCHHH
LRRTDKGDYVSVSSLGNFFSTLENDSNSWIAHQRASSKRVQSIGFNPEGSLWMLSRGAEI
HHHCCCCCEEEHHHHHHHHHHHCCCCCCEEEEHHCCHHHHHHCCCCCCCCEEEEECCCEE
RFNEDTNDLENWSKPIIPILNGYNYLDMGWDPNGDIWAGGGNGTLIVSKDQGKTWNKYPI
EECCCCCHHHHHCCCCEEEECCCCEEECCCCCCCCEEECCCCEEEEEECCCCCCCCCCCE
AAELPTNYIKIVFLDKEALDNQKGFVLGERGYILKWNS
EEECCCCEEEEEEEEHHHCCCCCCEEEECCCEEEEECC
>Mature Secondary Structure
MKKIITSFPNLLLSILLCFVLSSCSSTGVKMSDSSPWKTIQFQDQANALDVDFIDNNNGF
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEECCCCCEEEEEEEECCCCE
LVGSNRLIMESNDGGETWEKRNLDLPSEENFRLIDIDFKGQEGWLIGQPSLVMHTLDAGK
EEECCEEEEECCCCCCCHHHCCCCCCCCCCEEEEEEEECCCCCEEECCCCEEEEEECCCC
NWTRLSLGNKLPGQPYLITTVDDGVAELATTAGAIYQTSDSGESWNAKVLDASGSGGVRD
CEEEEECCCCCCCCCEEEEECCCCHHHHHHHCCEEEEECCCCCCCCEEEEECCCCCCHHH
LRRTDKGDYVSVSSLGNFFSTLENDSNSWIAHQRASSKRVQSIGFNPEGSLWMLSRGAEI
HHHCCCCCEEEHHHHHHHHHHHCCCCCCEEEEHHCCHHHHHHCCCCCCCCEEEEECCCEE
RFNEDTNDLENWSKPIIPILNGYNYLDMGWDPNGDIWAGGGNGTLIVSKDQGKTWNKYPI
EECCCCCHHHHHCCCCEEEECCCCEEECCCCCCCCEEECCCCEEEEEECCCCCCCCCCCE
AAELPTNYIKIVFLDKEALDNQKGFVLGERGYILKWNS
EEECCCCEEEEEEEEHHHCCCCCCEEEECCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA