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The map label for this gene is psbN

Identifier: 78778639

GI number: 78778639

Start: 242760

End: 242912

Strand: Direct

Name: psbN

Synonym: PMT9312_0254

Alternate gene names: 78778639

Gene position: 242760-242912 (Clockwise)

Preceding gene: 78778635

Following gene: 78778640

Centisome position: 14.2

GC content: 43.14

Gene sequence:

>153_bases
ATGCAAACTTTATCATCTGCGCCAGATCCTGCAGTTTCCGTAGCAGTAACAATTCTGGCAATACTTCTAGCTTTAACCGG
TTTTGGTCTTTGGACAGCATTTGGACCCAAAGCTGCAAAGCTTACAGATCCTTGGGATGAACATGACGATTAA

Upstream 100 bases:

>100_bases
AATGCTGTTTTTTGACCCATGTTGAATTCACAAAATCGAATATTATTTCGCTATTGTATAAGAACTTATACATAAATTGT
TTACAAACTTAGCAAAATTG

Downstream 100 bases:

>100_bases
TCTCTAAAAAGTATTTCAAAATTTTCCAAAAATACAAAAAGTAAACCTTTTACCATAATTTAAATATAAATTTAATAGGA
TATAAATCTGTCAGCACACG

Product: photosystem II reaction center protein N

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 50; Mature: 50

Protein sequence:

>50_residues
MQTLSSAPDPAVSVAVTILAILLALTGFGLWTAFGPKAAKLTDPWDEHDD

Sequences:

>Translated_50_residues
MQTLSSAPDPAVSVAVTILAILLALTGFGLWTAFGPKAAKLTDPWDEHDD
>Mature_50_residues
MQTLSSAPDPAVSVAVTILAILLALTGFGLWTAFGPKAAKLTDPWDEHDD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbN family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003398
- ProDom:   PD005510 [H]

Pfam domain/function: PF02468 PsbN [H]

EC number: NA

Molecular weight: Translated: 5253; Mature: 5253

Theoretical pI: Translated: 4.01; Mature: 4.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTLSSAPDPAVSVAVTILAILLALTGFGLWTAFGPKAAKLTDPWDEHDD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQTLSSAPDPAVSVAVTILAILLALTGFGLWTAFGPKAAKLTDPWDEHDD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA