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The map label for this gene is rbgA

Identifier: 78778582

GI number: 78778582

Start: 188396

End: 189268

Strand: Reverse

Name: rbgA

Synonym: PMT9312_0196

Alternate gene names: 78778582

Gene position: 189268-188396 (Counterclockwise)

Preceding gene: 78778584

Following gene: 78778581

Centisome position: 11.07

GC content: 34.02

Gene sequence:

>873_bases
GTGGACATACCCAAAATTCAATGGTACCCAGGCCATATCGCAAAAGCAGAAAAGAAATTATCTGAAATTATCAATAAAGT
AGATTTAGTTATAGAAGTTAGAGATGCACGAATTCCTTTGTCAACAGGACATCCACACTTAAATAAATGGATAAATAATA
AAAAACATATTCTTGTTATTAACAGATCAGACATGATCTCCCATAATACAATCAATAGTTGGAATAATTGGTTTAATGCT
AAAGATCAATATCCTCTTTGGTGTGATGCTAAAAGAGGAATAGGTATTAAAGAAATTTGTAAGTCAGCCAAAGATTCTAG
GTCGTCAATCGACGATAGAAGACTCTCTAGAGGAATGCGAATTAGGCCAATTAGAGCCCTTACACTTGGTTTTCCAAACG
TAGGAAAGTCAGCATTAATTAATAGAATTGCAAAAAAAAGAGTTGTAGATAGCGCTAGGAAAGCAGGCGTGACTCGTAAT
TTAAGATGGATAAAATTAGACAGTGGTATAGATCTGCTAGATGCTCCTGGAGTTATACCTCCAAATTTAGAAGATCAAAA
ATCAGCACTTAATCTTGCACTATGTGACGATATTGGTGAAGCTGCTTATGAAATAGAGAGTGTCGCAATTGAATTTATCA
AAATTATATCCACTCTCAACAAAGATAAGAATGCGAATATTTCAGTTAAAAAAATATCGAATAGATATGGAGTTGATATT
ACAAAAGGCTTTAAGAGTCCTTCTGCTTGGATCGACGAAGCAGCTTCAAAACATACCTCAGGCGATAAAAGGAGAATGTC
TCATAAGTTATTAGAAGATTATAGAAATCAAATGCTGGGTAAAATTGCTTTAGAAGTCCCACTATGGAATTAA

Upstream 100 bases:

>100_bases
AAATTTTTTAGTCATTAAATTTATACTAAACTTTAGAAGTAAATACTTTTGAAACTTATAAAAACTAAAAGGAATACAAA
ACTTTATTTGATTTATTGAA

Downstream 100 bases:

>100_bases
ATAATCAAAATTCTTTCGGCATTGGAGAAGGCGAGCGTATAGAAATTATTTATGAGCTACCTCTTCCTATGAGGCTAGAC
AGATGGTTGGTAAGTAAAAG

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MDIPKIQWYPGHIAKAEKKLSEIINKVDLVIEVRDARIPLSTGHPHLNKWINNKKHILVINRSDMISHNTINSWNNWFNA
KDQYPLWCDAKRGIGIKEICKSAKDSRSSIDDRRLSRGMRIRPIRALTLGFPNVGKSALINRIAKKRVVDSARKAGVTRN
LRWIKLDSGIDLLDAPGVIPPNLEDQKSALNLALCDDIGEAAYEIESVAIEFIKIISTLNKDKNANISVKKISNRYGVDI
TKGFKSPSAWIDEAASKHTSGDKRRMSHKLLEDYRNQMLGKIALEVPLWN

Sequences:

>Translated_290_residues
MDIPKIQWYPGHIAKAEKKLSEIINKVDLVIEVRDARIPLSTGHPHLNKWINNKKHILVINRSDMISHNTINSWNNWFNA
KDQYPLWCDAKRGIGIKEICKSAKDSRSSIDDRRLSRGMRIRPIRALTLGFPNVGKSALINRIAKKRVVDSARKAGVTRN
LRWIKLDSGIDLLDAPGVIPPNLEDQKSALNLALCDDIGEAAYEIESVAIEFIKIISTLNKDKNANISVKKISNRYGVDI
TKGFKSPSAWIDEAASKHTSGDKRRMSHKLLEDYRNQMLGKIALEVPLWN
>Mature_290_residues
MDIPKIQWYPGHIAKAEKKLSEIINKVDLVIEVRDARIPLSTGHPHLNKWINNKKHILVINRSDMISHNTINSWNNWFNA
KDQYPLWCDAKRGIGIKEICKSAKDSRSSIDDRRLSRGMRIRPIRALTLGFPNVGKSALINRIAKKRVVDSARKAGVTRN
LRWIKLDSGIDLLDAPGVIPPNLEDQKSALNLALCDDIGEAAYEIESVAIEFIKIISTLNKDKNANISVKKISNRYGVDI
TKGFKSPSAWIDEAASKHTSGDKRRMSHKLLEDYRNQMLGKIALEVPLWN

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI296317324, Length=297, Percent_Identity=24.5791245791246, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI9506611, Length=297, Percent_Identity=24.5791245791246, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI45643129, Length=192, Percent_Identity=28.125, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI45643127, Length=192, Percent_Identity=28.125, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI45593130, Length=192, Percent_Identity=28.125, Blast_Score=78, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI193211047, Length=220, Percent_Identity=30, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17534827, Length=196, Percent_Identity=26.530612244898, Blast_Score=68, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6323744, Length=217, Percent_Identity=27.6497695852535, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6324381, Length=173, Percent_Identity=27.7456647398844, Blast_Score=66, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6320842, Length=187, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=8e-12,
Organism=Drosophila melanogaster, GI85815858, Length=207, Percent_Identity=28.0193236714976, Blast_Score=85, Evalue=7e-17,
Organism=Drosophila melanogaster, GI28572990, Length=183, Percent_Identity=28.4153005464481, Blast_Score=79, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 32829; Mature: 32829

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIPKIQWYPGHIAKAEKKLSEIINKVDLVIEVRDARIPLSTGHPHLNKWINNKKHILVI
CCCCCCEECCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHCCCCEEEEE
NRSDMISHNTINSWNNWFNAKDQYPLWCDAKRGIGIKEICKSAKDSRSSIDDRRLSRGMR
ECCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCE
IRPIRALTLGFPNVGKSALINRIAKKRVVDSARKAGVTRNLRWIKLDSGIDLLDAPGVIP
ECEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEECCCCCCC
PNLEDQKSALNLALCDDIGEAAYEIESVAIEFIKIISTLNKDKNANISVKKISNRYGVDI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCH
TKGFKSPSAWIDEAASKHTSGDKRRMSHKLLEDYRNQMLGKIALEVPLWN
HCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCC
>Mature Secondary Structure
MDIPKIQWYPGHIAKAEKKLSEIINKVDLVIEVRDARIPLSTGHPHLNKWINNKKHILVI
CCCCCCEECCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHCCCCEEEEE
NRSDMISHNTINSWNNWFNAKDQYPLWCDAKRGIGIKEICKSAKDSRSSIDDRRLSRGMR
ECCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCE
IRPIRALTLGFPNVGKSALINRIAKKRVVDSARKAGVTRNLRWIKLDSGIDLLDAPGVIP
ECEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEECCCCCCC
PNLEDQKSALNLALCDDIGEAAYEIESVAIEFIKIISTLNKDKNANISVKKISNRYGVDI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCH
TKGFKSPSAWIDEAASKHTSGDKRRMSHKLLEDYRNQMLGKIALEVPLWN
HCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]