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The map label for this gene is ycf3 [H]

Identifier: 78778520

GI number: 78778520

Start: 130669

End: 131190

Strand: Direct

Name: ycf3 [H]

Synonym: PMT9312_0134

Alternate gene names: 78778520

Gene position: 130669-131190 (Clockwise)

Preceding gene: 78778516

Following gene: 78778522

Centisome position: 7.65

GC content: 31.99

Gene sequence:

>522_bases
GTGCCTAGTAATCAAAACAGAGACAATTTTATTGATAAAGCTTTTACTGTAATTGCTGAATCAATAGTTAAAATAATGCC
TATTGAAGAGAAAGAAAAAAAGGCTTACATCTACTATAGAGATGGGCTGGCAGCCCAAAATAATGGAGATTATTCCGAAG
CATTAGAGTATTACAAAGAGAGTTTACTACTTGAAGAAAATAAAATAGATAGGGGTGAGACTCTTAAAAATATGGCAATT
ATATTTATGAGTAATGGTGAAGAGGATTTGTCTATAGAAACTTATGAAAAAGCATTGGTAGAAAATCCTAAACAGCCATC
ATGCCTAAAAAACATAGGTTTAATTTATGAAAAAAGAGGGAGAAATGCTGAACAAAATGGTGATTTAGATCAGAGAGATA
TATGGTTTGATAAAGCTGCTGAAGTTTGGACTAAAGCAGTAAAATTATATCCTGGGGGGTATCTTGATATTGAGAATTGG
CTGAAAAACTCAGGAAGAAGTTCAATTGATATGTATCTCTAA

Upstream 100 bases:

>100_bases
AAATTAATTCTTGGTTTCATTTGTAATTATAATAAAAAATGTAATAGACTTTTTAAATAGTTATTTTAAATTACTATAAT
AATTTTATTGATTTAAAGCA

Downstream 100 bases:

>100_bases
TATTTTTACTCTGATAAAGAATATTCAACTGCTTCTTTAATATTCGAAATCTCTTTGATATTGATTAAATTTTGAAAATT
ATTTAGATCCTCCTCTAATT

Product: photosystem I assembly protein Ycf3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MPSNQNRDNFIDKAFTVIAESIVKIMPIEEKEKKAYIYYRDGLAAQNNGDYSEALEYYKESLLLEENKIDRGETLKNMAI
IFMSNGEEDLSIETYEKALVENPKQPSCLKNIGLIYEKRGRNAEQNGDLDQRDIWFDKAAEVWTKAVKLYPGGYLDIENW
LKNSGRSSIDMYL

Sequences:

>Translated_173_residues
MPSNQNRDNFIDKAFTVIAESIVKIMPIEEKEKKAYIYYRDGLAAQNNGDYSEALEYYKESLLLEENKIDRGETLKNMAI
IFMSNGEEDLSIETYEKALVENPKQPSCLKNIGLIYEKRGRNAEQNGDLDQRDIWFDKAAEVWTKAVKLYPGGYLDIENW
LKNSGRSSIDMYL
>Mature_172_residues
PSNQNRDNFIDKAFTVIAESIVKIMPIEEKEKKAYIYYRDGLAAQNNGDYSEALEYYKESLLLEENKIDRGETLKNMAII
FMSNGEEDLSIETYEKALVENPKQPSCLKNIGLIYEKRGRNAEQNGDLDQRDIWFDKAAEVWTKAVKLYPGGYLDIENWL
KNSGRSSIDMYL

Specific function: Seems to be required for the assembly of the photosystem I complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022818
- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 20011; Mature: 19880

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSNQNRDNFIDKAFTVIAESIVKIMPIEEKEKKAYIYYRDGLAAQNNGDYSEALEYYKE
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH
SLLLEENKIDRGETLKNMAIIFMSNGEEDLSIETYEKALVENPKQPSCLKNIGLIYEKRG
HHHHCCCCCCCCCHHCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
RNAEQNGDLDQRDIWFDKAAEVWTKAVKLYPGGYLDIENWLKNSGRSSIDMYL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCEECCC
>Mature Secondary Structure 
PSNQNRDNFIDKAFTVIAESIVKIMPIEEKEKKAYIYYRDGLAAQNNGDYSEALEYYKE
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH
SLLLEENKIDRGETLKNMAIIFMSNGEEDLSIETYEKALVENPKQPSCLKNIGLIYEKRG
HHHHCCCCCCCCCHHCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
RNAEQNGDLDQRDIWFDKAAEVWTKAVKLYPGGYLDIENWLKNSGRSSIDMYL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA