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The map label for this gene is flgF [H]

Identifier: 78358199

GI number: 78358199

Start: 3145400

End: 3146182

Strand: Reverse

Name: flgF [H]

Synonym: Dde_3159

Alternate gene names: 78358199

Gene position: 3146182-3145400 (Counterclockwise)

Preceding gene: 78358208

Following gene: 78358198

Centisome position: 84.34

GC content: 56.07

Gene sequence:

>783_bases
ATGCAAGACAGTATGTATAGCGCGTTATTCGGGGCGCTTACCAACGAACACCGGCTGAACAACATCGCCAACAATCTGGC
GAACGTGAATACCACCGGGTACAAACGCGACGTGCTCGCGTTCAAGGACACTTTTCTTTCCTTTGCCCATGACGAGGTGA
TGGAACCCATACCCAATGTGCGTTCCAAGAAGATGTTTCCGGAGCCGATACACATTGCCAAACCGCGCATAGCGCTGGCC
AAGACCGATTTCAGTCAGGGCAGCCTGAAGCTGACAGGCGGTACGCTGGACATGGCCGTGCACGGCGACGGCTTTTTCAA
GGTGCGTACCCCGGACGGCGAGTTCTACACCCGTAACGGCAACTTCCGTCAGACTTCCGACGGTCAGCTGGTAACGCAGC
AGGGCTGGCCCGTGCTGGGAGCGGGCGGAGACATACAGATTCCGCCGCGTGCCAATCTGACAGTGGCGGAAAACGGCACC
ATCTATGCCGACGGTGAAGAGATAGGTCAGGTGCAGGTGGTCACGCTGGACAATCTGGATGCGCTGGAAAAACAGGGAAG
CAACCTTTTCCGACTGCGTGAGGGAGCGGAGGCGCAGGAGGTTCCTGTGGAAAACCCCGTGGTGCTTCAGGGGTTTCTGG
AAACGGCCAACGTCGAGGTTGTTACTGAAATGGTTAACATGATCGAAGCCAACCGTCAGTTTGAAGCTTATCAGAAAATT
ATGCAGACCACTGATGCCGTGGACAAAATGGCCACCACTCAGGTGGGCAGAGGCCGTGCGTAA

Upstream 100 bases:

>100_bases
AACCGGCGCCGCCGGTTAAAAGAAGGCTGAACAGGCTGGCCCGCATGTTGCATCGTGACCGGCTGTGCGGGCGCCTGTGC
GCCGCGCCAAGGAGGCTGCC

Downstream 100 bases:

>100_bases
CGTGCGGCAAACCGGAGGATATCCGTCATGATGCGTTCTCTCTGGACTGCTGCTACAGGTATGATCGCCCAGCAGCTTAA
TATTGACACCATTTCCAACA

Product: flagellar basal-body rod protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MQDSMYSALFGALTNEHRLNNIANNLANVNTTGYKRDVLAFKDTFLSFAHDEVMEPIPNVRSKKMFPEPIHIAKPRIALA
KTDFSQGSLKLTGGTLDMAVHGDGFFKVRTPDGEFYTRNGNFRQTSDGQLVTQQGWPVLGAGGDIQIPPRANLTVAENGT
IYADGEEIGQVQVVTLDNLDALEKQGSNLFRLREGAEAQEVPVENPVVLQGFLETANVEVVTEMVNMIEANRQFEAYQKI
MQTTDAVDKMATTQVGRGRA

Sequences:

>Translated_260_residues
MQDSMYSALFGALTNEHRLNNIANNLANVNTTGYKRDVLAFKDTFLSFAHDEVMEPIPNVRSKKMFPEPIHIAKPRIALA
KTDFSQGSLKLTGGTLDMAVHGDGFFKVRTPDGEFYTRNGNFRQTSDGQLVTQQGWPVLGAGGDIQIPPRANLTVAENGT
IYADGEEIGQVQVVTLDNLDALEKQGSNLFRLREGAEAQEVPVENPVVLQGFLETANVEVVTEMVNMIEANRQFEAYQKI
MQTTDAVDKMATTQVGRGRA
>Mature_260_residues
MQDSMYSALFGALTNEHRLNNIANNLANVNTTGYKRDVLAFKDTFLSFAHDEVMEPIPNVRSKKMFPEPIHIAKPRIALA
KTDFSQGSLKLTGGTLDMAVHGDGFFKVRTPDGEFYTRNGNFRQTSDGQLVTQQGWPVLGAGGDIQIPPRANLTVAENGT
IYADGEEIGQVQVVTLDNLDALEKQGSNLFRLREGAEAQEVPVENPVVLQGFLETANVEVVTEMVNMIEANRQFEAYQKI
MQTTDAVDKMATTQVGRGRA

Specific function: Unknown

COG id: COG4786

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family [H]

Homologues:

Organism=Escherichia coli, GI1787318, Length=258, Percent_Identity=33.7209302325581, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1787317, Length=260, Percent_Identity=30.3846153846154, Blast_Score=96, Evalue=3e-21,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR020013
- InterPro:   IPR012836 [H]

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]

EC number: NA

Molecular weight: Translated: 28624; Mature: 28624

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDSMYSALFGALTNEHRLNNIANNLANVNTTGYKRDVLAFKDTFLSFAHDEVMEPIPNV
CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
RSKKMFPEPIHIAKPRIALAKTDFSQGSLKLTGGTLDMAVHGDGFFKVRTPDGEFYTRNG
HHCCCCCCCCEECCCEEEEEECCCCCCEEEEECCEEEEEEECCCEEEEECCCCCEEECCC
NFRQTSDGQLVTQQGWPVLGAGGDIQIPPRANLTVAENGTIYADGEEIGQVQVVTLDNLD
CEEECCCCCEEEECCCEEEECCCCEEECCCCCEEEECCCEEEECCHHHCEEEEEEECCCH
ALEKQGSNLFRLREGAEAQEVPVENPVVLQGFLETANVEVVTEMVNMIEANRQFEAYQKI
HHHHCCCCEEEECCCCCHHCCCCCCCEEEEEHHHHCCHHHHHHHHHHHHCCCHHHHHHHH
MQTTDAVDKMATTQVGRGRA
HHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQDSMYSALFGALTNEHRLNNIANNLANVNTTGYKRDVLAFKDTFLSFAHDEVMEPIPNV
CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
RSKKMFPEPIHIAKPRIALAKTDFSQGSLKLTGGTLDMAVHGDGFFKVRTPDGEFYTRNG
HHCCCCCCCCEECCCEEEEEECCCCCCEEEEECCEEEEEEECCCEEEEECCCCCEEECCC
NFRQTSDGQLVTQQGWPVLGAGGDIQIPPRANLTVAENGTIYADGEEIGQVQVVTLDNLD
CEEECCCCCEEEECCCEEEECCCCEEECCCCCEEEECCCEEEECCHHHCEEEEEEECCCH
ALEKQGSNLFRLREGAEAQEVPVENPVVLQGFLETANVEVVTEMVNMIEANRQFEAYQKI
HHHHCCCCEEEECCCCCHHCCCCCCCEEEEEHHHHCCHHHHHHHHHHHHCCCHHHHHHHH
MQTTDAVDKMATTQVGRGRA
HHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1474584; 11259647 [H]