Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
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Accession | NC_007519 |
Length | 3,730,232 |
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The map label for this gene is 78357535
Identifier: 78357535
GI number: 78357535
Start: 2511559
End: 2513187
Strand: Direct
Name: 78357535
Synonym: Dde_2492
Alternate gene names: NA
Gene position: 2511559-2513187 (Clockwise)
Preceding gene: 78357534
Following gene: 78357544
Centisome position: 67.33
GC content: 59.98
Gene sequence:
>1629_bases ATGCCCGCCGACATCCGGCGGCGGTTCATGTCAAAGGAAGCGTTTTTCTCCCCCGATTTCCCTGCACCGGACGAGGGTCA AGGGTTTGCAGTTCGGCCGGAGACCGCAAATCCTGCTCCAACTTCCCGTCTTATTGCCTATCAGCGGAATTGTTCCCGGC AGCCATTTCGGACGGCGGTTCGGTTCCCGAAAACGGAATCGAACAGTATCGCCTTCCGTTTCGACAAACCATTTGCTTTT TCCGGCACACCAAGCATGAATGACACCGGTTGCCAAAACGAACAGGGAGCACCAGGCCATGCCATGATCGAATGCCTGAA ACGAATCATCCGCAAATACCAGAGCCTTGAACCGCCGGACGGACTGCTGCCCCGGCGTGTTGCCATTGGCAGCCTGCCGG GTAAGGTCTCGGTGGTCACCGGCGTCAGGGGTAGCGGCAAGACCACTTTGCTGCGCCAGCGCATCCGGCAACTAATCGAG AGCGGTGTTCCCCGTAAGAACATCCTTTATCTCAATTTGACCGACGACCGGCTTTACTGGCTGCGGCACGAAAACCCGGA CATCATCCTGGAGGCCTATTACGAGCTCCATCCGCAGAAGCGCGGCAGCGAGACGGTTCACTACTTTTTTGACGAGGTGC AGGCCCTCCAGCACTGGCCACTCTTCATCGACCGTTTGTTGCGCACCGAAAAGTGCGAGATCACCGTGGCCGGTTCCTTG CTGCCTTCACCGGAGGAGGAAACCGCCTGCCCTCTGACCGGCCGGATCGTCTCCTGGGAGATCTTCCCGCTTTCGTTTCG GGAGTTCCTCTACGGCAAGGGCATCGAAAGCGACGGCCCCTTATCCACCAAGCAGCGGCTGACCATCCAGAAGGCGTTCG AGGACTATTGGCAGTTTGGCGGCTTCCCCGGCGCGAACCGAGTCGACCAGCAGCAAAGCATAGAGGCTCATCAGGCCAAC TGGAACGCCATCCTTGCCAGCATCATCGGCCACCACAACATCTCCCACCCTCGGGCGGTGATCGATCTGGCCCACTGGCT GATGGACAATACCGGCTTCTTCTATGCCGTCAGCCACCTGACCGACCACCTGAAATCCCTCGGCCACCGGGTGCGCAAAA GCTCGGTGGTCGACTGGCTCGTCGCGTTCGAGGATGCCGGGCTGCTGTTCAGCGTGAATATTTTTTCCAGCTCCCCAACC CGGATCAGCGTCAATCCCCGCAAGGTCTACTGTGTTGACCACGCCCTGACGGCCTCGGTCAGCTCCGGCATCTTCACCAA CCGTGACTGCCTGCTGGAGAACCTGGTGTTCACCGCGCTGCGCCGAGTGACGCCGGAAATCTTCTACCACAAGACCAAGA CGGGCCGGGAGGTGGACCTTGTCGCGCTGCTGCCATCAGCGCCGGGACAAGAACAAGCCATACTGCTTATCCAGGTCTGC GCCTCGCTGGCCGATCCCCGCGTCAAGCAGAGCGAGCTCCATTCCCTCTCCGAAGCCATGGTCGAGCTGGCAGTGGCGGA GGGGACCATCGTCACCTGGCGAACCGATGAAACCATCCCCGTCGGCTTCGGCACCATTCGGGTGGTGCCGATCTGGCAGT TTCTGCTGGAGATGGAGCCGCGAACCTAA
Upstream 100 bases:
>100_bases GTAGCCCGCAGTGCAAAAGCATGGAGGGTGCGTCGACCTGGCGCAAAACAGCCTCCACCCTCGACTTGCCCCATAACCTA TTGATGTGAAATTAGAAATA
Downstream 100 bases:
>100_bases AATAGCGGCTCGCTTTATTTTAGGTTCGTGCCGCTTCCTAAAACTACGGTCTCCATCGGTTTGATCTCGTACCCCATGGC CCTATAGCCGCGCTGGCGTT
Product: AAA family ATPase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 542; Mature: 541
Protein sequence:
>542_residues MPADIRRRFMSKEAFFSPDFPAPDEGQGFAVRPETANPAPTSRLIAYQRNCSRQPFRTAVRFPKTESNSIAFRFDKPFAF SGTPSMNDTGCQNEQGAPGHAMIECLKRIIRKYQSLEPPDGLLPRRVAIGSLPGKVSVVTGVRGSGKTTLLRQRIRQLIE SGVPRKNILYLNLTDDRLYWLRHENPDIILEAYYELHPQKRGSETVHYFFDEVQALQHWPLFIDRLLRTEKCEITVAGSL LPSPEEETACPLTGRIVSWEIFPLSFREFLYGKGIESDGPLSTKQRLTIQKAFEDYWQFGGFPGANRVDQQQSIEAHQAN WNAILASIIGHHNISHPRAVIDLAHWLMDNTGFFYAVSHLTDHLKSLGHRVRKSSVVDWLVAFEDAGLLFSVNIFSSSPT RISVNPRKVYCVDHALTASVSSGIFTNRDCLLENLVFTALRRVTPEIFYHKTKTGREVDLVALLPSAPGQEQAILLIQVC ASLADPRVKQSELHSLSEAMVELAVAEGTIVTWRTDETIPVGFGTIRVVPIWQFLLEMEPRT
Sequences:
>Translated_542_residues MPADIRRRFMSKEAFFSPDFPAPDEGQGFAVRPETANPAPTSRLIAYQRNCSRQPFRTAVRFPKTESNSIAFRFDKPFAF SGTPSMNDTGCQNEQGAPGHAMIECLKRIIRKYQSLEPPDGLLPRRVAIGSLPGKVSVVTGVRGSGKTTLLRQRIRQLIE SGVPRKNILYLNLTDDRLYWLRHENPDIILEAYYELHPQKRGSETVHYFFDEVQALQHWPLFIDRLLRTEKCEITVAGSL LPSPEEETACPLTGRIVSWEIFPLSFREFLYGKGIESDGPLSTKQRLTIQKAFEDYWQFGGFPGANRVDQQQSIEAHQAN WNAILASIIGHHNISHPRAVIDLAHWLMDNTGFFYAVSHLTDHLKSLGHRVRKSSVVDWLVAFEDAGLLFSVNIFSSSPT RISVNPRKVYCVDHALTASVSSGIFTNRDCLLENLVFTALRRVTPEIFYHKTKTGREVDLVALLPSAPGQEQAILLIQVC ASLADPRVKQSELHSLSEAMVELAVAEGTIVTWRTDETIPVGFGTIRVVPIWQFLLEMEPRT >Mature_541_residues PADIRRRFMSKEAFFSPDFPAPDEGQGFAVRPETANPAPTSRLIAYQRNCSRQPFRTAVRFPKTESNSIAFRFDKPFAFS GTPSMNDTGCQNEQGAPGHAMIECLKRIIRKYQSLEPPDGLLPRRVAIGSLPGKVSVVTGVRGSGKTTLLRQRIRQLIES GVPRKNILYLNLTDDRLYWLRHENPDIILEAYYELHPQKRGSETVHYFFDEVQALQHWPLFIDRLLRTEKCEITVAGSLL PSPEEETACPLTGRIVSWEIFPLSFREFLYGKGIESDGPLSTKQRLTIQKAFEDYWQFGGFPGANRVDQQQSIEAHQANW NAILASIIGHHNISHPRAVIDLAHWLMDNTGFFYAVSHLTDHLKSLGHRVRKSSVVDWLVAFEDAGLLFSVNIFSSSPTR ISVNPRKVYCVDHALTASVSSGIFTNRDCLLENLVFTALRRVTPEIFYHKTKTGREVDLVALLPSAPGQEQAILLIQVCA SLADPRVKQSELHSLSEAMVELAVAEGTIVTWRTDETIPVGFGTIRVVPIWQFLLEMEPRT
Specific function: Unknown
COG id: COG1373
COG function: function code R; Predicted ATPase (AAA+ superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61126; Mature: 60994
Theoretical pI: Translated: 7.85; Mature: 7.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPADIRRRFMSKEAFFSPDFPAPDEGQGFAVRPETANPAPTSRLIAYQRNCSRQPFRTAV CCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHH RFPKTESNSIAFRFDKPFAFSGTPSMNDTGCQNEQGAPGHAMIECLKRIIRKYQSLEPPD CCCCCCCCCEEEEECCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC GLLPRRVAIGSLPGKVSVVTGVRGSGKTTLLRQRIRQLIESGVPRKNILYLNLTDDRLYW CCCCCHHEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEE LRHENPDIILEAYYELHPQKRGSETVHYFFDEVQALQHWPLFIDRLLRTEKCEITVAGSL EECCCCCEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC LPSPEEETACPLTGRIVSWEIFPLSFREFLYGKGIESDGPLSTKQRLTIQKAFEDYWQFG CCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC GFPGANRVDQQQSIEAHQANWNAILASIIGHHNISHPRAVIDLAHWLMDNTGFFYAVSHL CCCCCCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEHHHH TDHLKSLGHRVRKSSVVDWLVAFEDAGLLFSVNIFSSSPTRISVNPRKVYCVDHALTASV HHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEEECCCCCEEEECCCEEEEECHHHHHHH SSGIFTNRDCLLENLVFTALRRVTPEIFYHKTKTGREVDLVALLPSAPGQEQAILLIQVC HCCCCCCHHHHHHHHHHHHHHHHCHHHHEEECCCCCEEEEEEEECCCCCCCHHHHHHHHH ASLADPRVKQSELHSLSEAMVELAVAEGTIVTWRTDETIPVGFGTIRVVPIWQFLLEMEP HHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCEEHHHHHHHHHHCCC RT CC >Mature Secondary Structure PADIRRRFMSKEAFFSPDFPAPDEGQGFAVRPETANPAPTSRLIAYQRNCSRQPFRTAV CHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHH RFPKTESNSIAFRFDKPFAFSGTPSMNDTGCQNEQGAPGHAMIECLKRIIRKYQSLEPPD CCCCCCCCCEEEEECCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC GLLPRRVAIGSLPGKVSVVTGVRGSGKTTLLRQRIRQLIESGVPRKNILYLNLTDDRLYW CCCCCHHEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEE LRHENPDIILEAYYELHPQKRGSETVHYFFDEVQALQHWPLFIDRLLRTEKCEITVAGSL EECCCCCEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC LPSPEEETACPLTGRIVSWEIFPLSFREFLYGKGIESDGPLSTKQRLTIQKAFEDYWQFG CCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC GFPGANRVDQQQSIEAHQANWNAILASIIGHHNISHPRAVIDLAHWLMDNTGFFYAVSHL CCCCCCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEHHHH TDHLKSLGHRVRKSSVVDWLVAFEDAGLLFSVNIFSSSPTRISVNPRKVYCVDHALTASV HHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEEECCCCCEEEECCCEEEEECHHHHHHH SSGIFTNRDCLLENLVFTALRRVTPEIFYHKTKTGREVDLVALLPSAPGQEQAILLIQVC HCCCCCCHHHHHHHHHHHHHHHHCHHHHEEECCCCCEEEEEEEECCCCCCCHHHHHHHHH ASLADPRVKQSELHSLSEAMVELAVAEGTIVTWRTDETIPVGFGTIRVVPIWQFLLEMEP HHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCEEHHHHHHHHHHCCC RT CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]