| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is capK [H]
Identifier: 78355883
GI number: 78355883
Start: 862776
End: 864185
Strand: Direct
Name: capK [H]
Synonym: Dde_0836
Alternate gene names: 78355883
Gene position: 862776-864185 (Clockwise)
Preceding gene: 78355882
Following gene: 78355884
Centisome position: 23.13
GC content: 58.37
Gene sequence:
>1410_bases ATGTCTGATTCCGCAGAGACTGTCCGCACCAATGCACCGGACTGGTTTTCGTATGTGGCACGCCACGTTATTGCTCCCAT GTGGGCGGTGTACGAACATTCACCGTATCTGCGTCACCTGAAAACCGTCAGTGCAAACCAGTACCGTCCGCTTGACGAAA TGCGCGCGCTGCAGTGGGAACGCCTGCGCGGTCTCTTGCGGCATGCGGCTGCTCATGTGCCTTACTACCGTGCTCTATGG GCTGCACAGGGCATAGATGCCGACAGCGTGCGCAGCTGGGATGATTTTTACGCACTGCCGGTGCTGGAAAAAGAACACAT CCGCTCTGCGGGCAGGACCCTGCTGGCCGGTAATGTGCCGGAGGACAAACTTGTCTGGACAAAAACATCCGGTTCAACAG GTGTTTCGCTGGAAATAGCCAAGGATGAAGCCAGCCAGCAGTGGAAAAGAGCCTGCACCCTGCGCCATGACATGTGGGCG GGCTGGCGTCTGGGCGAACGTGTGGGCGCTGTGTGGGGCAATCCTGAAAGTTCGCAGAACTGGCGCCTCTGGCTGCGTAA TCTGCTGCTGCAGCGCATGACCTTTCTGGACACGCTGCGGATGGATGAAGCGGCCATGAACAATTTTCACCGTACGCTGC TGCGCGTGCGGCCGGTGCTGCTCTTCGGCCATGCCCATTCTCTGTACCTTTTTGCTTCGTTCATGAAGGCCCGCGGGCTG TCCGGCATTTATCCGCGGGGTATCATCAGCACGGCCATGGTGCTGCACGATTTTGAACGCGCCATGGTGGAGGATGTGTT CCGCTGCAAAGTGACCAACCGCTACGGTTGCGAAGAGGTCAGTCTCATTGCCTGCGAATGCGAGCAGCATCAGGGGCTGC ATGTAAATATGGACACGCTGGTGGTGGAATGTGTGGATGCCGATGGCAGGCCGGTACCTGAGGGTGAACCCGGAGCAGTG GTGGTAACTGACCTGAGCAACCTTGCCATGCCTTTCATCCGCTACCGCGTGGGTGATGTTTCACGGTTTATGGCCGGTAC CTGCGCCTGCGGACGCAGCTATCCGCGGCTTGCCGCGGTGGAGGGCAGAATAGCCGACTACGTGCGCACGCCGCAGGGAG AGTTTATTTCCGGCATTTCGCTGACCGAAAATTTCGCCATGAAGCTTTCCGGCGTAAAGCAGCTGCAGATTGTGCAGGAA GAGCTGGATTATCTGGTGTTCCGCATGGTGCGCGGCGCCGACTGGCAGGATAGCGAGCTGGAGACTCTGGCGCAGCTGGT GCGGACCCGTTTCGGCCGGAGCATGCGGTACGACGTGGAGTTTACAGACTCCATACAGTCGGAAAGCAGCGGTAAGTTCC GGTTCTGTATTTCCCGACTGGCCGAAAAACCGTTTTCACCGGGAGCATAG
Upstream 100 bases:
>100_bases AGTTTTGCCCCCATGGCGCAGGTGCTTGAAGACACGCTGGGCGCCGGCACAATGCAGACAGTATCTGCACCGCAGGGCAG CTTTTCAGGAGAAAACGCGC
Downstream 100 bases:
>100_bases CCTGTGCTGTACGCGTTTTTATGCCTGATTCTGGCATTTGCCACGGCCGCCACAGCATGGCTTGCGCTGCTGGCGGTGCT TGGCTGGCGGCCATGCGTGC
Product: CapK related-protein
Products: AMP; Phenylacetyl-CoA; Diphosphate [C]
Alternate protein names: NA
Number of amino acids: Translated: 469; Mature: 468
Protein sequence:
>469_residues MSDSAETVRTNAPDWFSYVARHVIAPMWAVYEHSPYLRHLKTVSANQYRPLDEMRALQWERLRGLLRHAAAHVPYYRALW AAQGIDADSVRSWDDFYALPVLEKEHIRSAGRTLLAGNVPEDKLVWTKTSGSTGVSLEIAKDEASQQWKRACTLRHDMWA GWRLGERVGAVWGNPESSQNWRLWLRNLLLQRMTFLDTLRMDEAAMNNFHRTLLRVRPVLLFGHAHSLYLFASFMKARGL SGIYPRGIISTAMVLHDFERAMVEDVFRCKVTNRYGCEEVSLIACECEQHQGLHVNMDTLVVECVDADGRPVPEGEPGAV VVTDLSNLAMPFIRYRVGDVSRFMAGTCACGRSYPRLAAVEGRIADYVRTPQGEFISGISLTENFAMKLSGVKQLQIVQE ELDYLVFRMVRGADWQDSELETLAQLVRTRFGRSMRYDVEFTDSIQSESSGKFRFCISRLAEKPFSPGA
Sequences:
>Translated_469_residues MSDSAETVRTNAPDWFSYVARHVIAPMWAVYEHSPYLRHLKTVSANQYRPLDEMRALQWERLRGLLRHAAAHVPYYRALW AAQGIDADSVRSWDDFYALPVLEKEHIRSAGRTLLAGNVPEDKLVWTKTSGSTGVSLEIAKDEASQQWKRACTLRHDMWA GWRLGERVGAVWGNPESSQNWRLWLRNLLLQRMTFLDTLRMDEAAMNNFHRTLLRVRPVLLFGHAHSLYLFASFMKARGL SGIYPRGIISTAMVLHDFERAMVEDVFRCKVTNRYGCEEVSLIACECEQHQGLHVNMDTLVVECVDADGRPVPEGEPGAV VVTDLSNLAMPFIRYRVGDVSRFMAGTCACGRSYPRLAAVEGRIADYVRTPQGEFISGISLTENFAMKLSGVKQLQIVQE ELDYLVFRMVRGADWQDSELETLAQLVRTRFGRSMRYDVEFTDSIQSESSGKFRFCISRLAEKPFSPGA >Mature_468_residues SDSAETVRTNAPDWFSYVARHVIAPMWAVYEHSPYLRHLKTVSANQYRPLDEMRALQWERLRGLLRHAAAHVPYYRALWA AQGIDADSVRSWDDFYALPVLEKEHIRSAGRTLLAGNVPEDKLVWTKTSGSTGVSLEIAKDEASQQWKRACTLRHDMWAG WRLGERVGAVWGNPESSQNWRLWLRNLLLQRMTFLDTLRMDEAAMNNFHRTLLRVRPVLLFGHAHSLYLFASFMKARGLS GIYPRGIISTAMVLHDFERAMVEDVFRCKVTNRYGCEEVSLIACECEQHQGLHVNMDTLVVECVDADGRPVPEGEPGAVV VTDLSNLAMPFIRYRVGDVSRFMAGTCACGRSYPRLAAVEGRIADYVRTPQGEFISGISLTENFAMKLSGVKQLQIVQEE LDYLVFRMVRGADWQDSELETLAQLVRTRFGRSMRYDVEFTDSIQSESSGKFRFCISRLAEKPFSPGA
Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]
COG id: COG1541
COG function: function code H; Coenzyme F390 synthetase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 6.2.1.30 [C]
Molecular weight: Translated: 53386; Mature: 53254
Theoretical pI: Translated: 7.56; Mature: 7.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSAETVRTNAPDWFSYVARHVIAPMWAVYEHSPYLRHLKTVSANQYRPLDEMRALQWE CCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHH RLRGLLRHAAAHVPYYRALWAAQGIDADSVRSWDDFYALPVLEKEHIRSAGRTLLAGNVP HHHHHHHHHHHHCCHHHHHHHHCCCCHHHCCCCHHHEECCCCCHHHHHHHCCEEEECCCC EDKLVWTKTSGSTGVSLEIAKDEASQQWKRACTLRHDMWAGWRLGERVGAVWGNPESSQN CCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCH WRLWLRNLLLQRMTFLDTLRMDEAAMNNFHRTLLRVRPVLLFGHAHSLYLFASFMKARGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHCCC SGIYPRGIISTAMVLHDFERAMVEDVFRCKVTNRYGCEEVSLIACECEQHQGLHVNMDTL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEEEEHHCCCCCEEEHHHE VVECVDADGRPVPEGEPGAVVVTDLSNLAMPFIRYRVGDVSRFMAGTCACGRSYPRLAAV EEEEECCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH EGRIADYVRTPQGEFISGISLTENFAMKLSGVKQLQIVQEELDYLVFRMVRGADWQDSEL HHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH ETLAQLVRTRFGRSMRYDVEFTDSIQSESSGKFRFCISRLAEKPFSPGA HHHHHHHHHHCCCCEEECEEECCCCCCCCCCHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SDSAETVRTNAPDWFSYVARHVIAPMWAVYEHSPYLRHLKTVSANQYRPLDEMRALQWE CCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHH RLRGLLRHAAAHVPYYRALWAAQGIDADSVRSWDDFYALPVLEKEHIRSAGRTLLAGNVP HHHHHHHHHHHHCCHHHHHHHHCCCCHHHCCCCHHHEECCCCCHHHHHHHCCEEEECCCC EDKLVWTKTSGSTGVSLEIAKDEASQQWKRACTLRHDMWAGWRLGERVGAVWGNPESSQN CCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCH WRLWLRNLLLQRMTFLDTLRMDEAAMNNFHRTLLRVRPVLLFGHAHSLYLFASFMKARGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHCCC SGIYPRGIISTAMVLHDFERAMVEDVFRCKVTNRYGCEEVSLIACECEQHQGLHVNMDTL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEEEEHHCCCCCEEEHHHE VVECVDADGRPVPEGEPGAVVVTDLSNLAMPFIRYRVGDVSRFMAGTCACGRSYPRLAAV EEEEECCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH EGRIADYVRTPQGEFISGISLTENFAMKLSGVKQLQIVQEELDYLVFRMVRGADWQDSEL HHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH ETLAQLVRTRFGRSMRYDVEFTDSIQSESSGKFRFCISRLAEKPFSPGA HHHHHHHHHHCCCCEEECEEECCCCCCCCCCHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; Coenzyme A; Phenylacetic acid [C]
Specific reaction: ATP + Coenzyme A + Phenylacetic acid --> AMP + Phenylacetyl-CoA + Diphosphate [C]
General reaction: Forming of carbon sulfur bond [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7961465 [H]