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The map label for this gene is rnfE [H]

Identifier: 78355631

GI number: 78355631

Start: 608151

End: 608825

Strand: Direct

Name: rnfE [H]

Synonym: Dde_0584

Alternate gene names: 78355631

Gene position: 608151-608825 (Clockwise)

Preceding gene: 78355630

Following gene: 78355632

Centisome position: 16.3

GC content: 58.37

Gene sequence:

>675_bases
ATGGCCAGCATGTGGAAAGAGTTCAGCAAAGGCCTGTGGAGGGAAATTCCTCCGTTCAGGCTGGTTCTGGGGCTGTGCCC
GGTGCTTGCGGTCACCAAGTCCGCCAATAACGGCTTCGGTATGGGCATGGCGGTAATCTTCGTGCTCTTTTTATCCAACG
TCATCATTTCGCTGGTGCGCAACCTTATTCCCAAAAAGGTGCGCATCGCCTGTTATATCGCCATCGCCGCCTCGCTGGTG
GTGGCCATCGAGCTGCTTATGCAGGCATATGCCTATCCGTTGTACCAGCAGCTCGGCATCTTTGTTCCCCTGATTGTTGT
TAACTGCATCATTCTGGGGCGTGCAGAAGCTTTTGCAGGTAAAAACCCGGTGCATCTGGCCGCGGCTGACGGGCTGGGCA
TCGGCATGGGCTTCTGCCTGTCGCTCACCTTTCTCGGCTCGCTGCGCGAAATGCTGGGCACCGGTACGGTTTTCGGCCAT
CAGGTGATGTGGCAGGGGTTCAAACCCCTCACATTCATGGTCGAAGCGCCGGGCGCGTTCATTTCTCTGGGGCTTGTTCT
GGGCGCCATGAACCTGCTCAGCATTGTGCAGGCCAAGCGCAAGGGCATCCCCGAACCGGAAAACCCGACCCCCGGCTGCG
AATCGTGTCGCGGCTGCGCCGCAGGTCACAGGTAA

Upstream 100 bases:

>100_bases
AAATCGCTGAAGAGCGAGATCGTCACAGGCTTCAACTAGGCGAAAACCAGACGCAACATGCGTACCCCGCGGCACGCGGG
CGACGTCATAGGAGAATACA

Downstream 100 bases:

>100_bases
GGGAGGCTGAACATGGATTATTTCCTGCTTTTGATCTCGGCGATCTTTGTCAACAACATTGTTCTTGCCCAGTATCTCGG
TCAGTGCCCCTACCTTGGCT

Product: electron transport complex RsxE subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MASMWKEFSKGLWREIPPFRLVLGLCPVLAVTKSANNGFGMGMAVIFVLFLSNVIISLVRNLIPKKVRIACYIAIAASLV
VAIELLMQAYAYPLYQQLGIFVPLIVVNCIILGRAEAFAGKNPVHLAAADGLGIGMGFCLSLTFLGSLREMLGTGTVFGH
QVMWQGFKPLTFMVEAPGAFISLGLVLGAMNLLSIVQAKRKGIPEPENPTPGCESCRGCAAGHR

Sequences:

>Translated_224_residues
MASMWKEFSKGLWREIPPFRLVLGLCPVLAVTKSANNGFGMGMAVIFVLFLSNVIISLVRNLIPKKVRIACYIAIAASLV
VAIELLMQAYAYPLYQQLGIFVPLIVVNCIILGRAEAFAGKNPVHLAAADGLGIGMGFCLSLTFLGSLREMLGTGTVFGH
QVMWQGFKPLTFMVEAPGAFISLGLVLGAMNLLSIVQAKRKGIPEPENPTPGCESCRGCAAGHR
>Mature_223_residues
ASMWKEFSKGLWREIPPFRLVLGLCPVLAVTKSANNGFGMGMAVIFVLFLSNVIISLVRNLIPKKVRIACYIAIAASLVV
AIELLMQAYAYPLYQQLGIFVPLIVVNCIILGRAEAFAGKNPVHLAAADGLGIGMGFCLSLTFLGSLREMLGTGTVFGHQ
VMWQGFKPLTFMVEAPGAFISLGLVLGAMNLLSIVQAKRKGIPEPENPTPGCESCRGCAAGHR

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=207, Percent_Identity=42.9951690821256, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1787914, Length=142, Percent_Identity=33.8028169014084, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 24026; Mature: 23895

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASMWKEFSKGLWREIPPFRLVLGLCPVLAVTKSANNGFGMGMAVIFVLFLSNVIISLVR
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
NLIPKKVRIACYIAIAASLVVAIELLMQAYAYPLYQQLGIFVPLIVVNCIILGRAEAFAG
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KNPVHLAAADGLGIGMGFCLSLTFLGSLREMLGTGTVFGHQVMWQGFKPLTFMVEAPGAF
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCHH
ISLGLVLGAMNLLSIVQAKRKGIPEPENPTPGCESCRGCAAGHR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCC
>Mature Secondary Structure 
ASMWKEFSKGLWREIPPFRLVLGLCPVLAVTKSANNGFGMGMAVIFVLFLSNVIISLVR
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
NLIPKKVRIACYIAIAASLVVAIELLMQAYAYPLYQQLGIFVPLIVVNCIILGRAEAFAG
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KNPVHLAAADGLGIGMGFCLSLTFLGSLREMLGTGTVFGHQVMWQGFKPLTFMVEAPGAF
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCHH
ISLGLVLGAMNLLSIVQAKRKGIPEPENPTPGCESCRGCAAGHR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA