| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is yfiQ [C]
Identifier: 78355515
GI number: 78355515
Start: 479106
End: 481568
Strand: Direct
Name: yfiQ [C]
Synonym: Dde_0468
Alternate gene names: 78355515
Gene position: 479106-481568 (Clockwise)
Preceding gene: 78355514
Following gene: 78355517
Centisome position: 12.84
GC content: 60.37
Gene sequence:
>2463_bases ATGAGCATGACCATTCCCATTGATTATTCGCGCATAACGGATCTGTTCCGCACCGCGCGGGAAGAAGGCCGTGATTTTCT GTATGAGTACGAGGTCTACACCCTGCTTGCCAGTTCCGGAGCGGAAACCCCGCCGCGGGCGAATCTGATTCCCCGCGGGG CCAGACCCTCGGACGAGGAACTGATGGCCATTCCCGGAGACAGGGCCGTGCTCAAGATTGTCTCGCCCGCCATTGTGCAT AAGACCGAAGTGGGCGGAGTGCGCATTGTGGAAAAAACGCCGGACCGCATCCGCTCCGCCATGCGGCGCATGCTGTATGA AGTGCCGGAGAATTTTGCCGCCTGCATAGAACGCGACCCCGACCATGCCCCGCTGCCGTACAGAGGCCTGCGCGGAGAAA CATTACAGGCTGCCATCAGCAGAGACCTGAAGGGGGTACTGCAGGTACAGTTCATGCCGCCGGATTCCGGTGCGTTCGGC AATGAACTTATTGTGGGCCTGCGGCGCACGCGCGAGTTCGGAACTGTGATAAGCGCCGGTCTGGGCGGTACGGATACCGA GCTGTATGCCGAGCGCTTCCGCAAAGGGCAGGCCGTTGTGGCCGCGTCCACCCAGCTGACGGACGAGGATGCTTTTTTCG AGCTGTTCCGCAAAACCATTTCGTATCGCAAGCTGGCCGGTCTGACACGGGGACAGCAGCGCATTGTCACCGATGAACAG CTGGTGGAATGCTTCGGGTCGTTCATCCGCATGGCACGTTATTTTTCCGACGCCAACCCGCAAGCGCCTTTTGTCATTGA TGAGCTGGAAATAAATCCCTTTGCATTCAGTGATTACCTGATGGTGCCGCTGGACGGCCTGTGCCGTTTCAGTGAACCGG CACAGCCGGCCAACGTCCGGCCCGTGGCAAAAATAGACAGACTGCTGCACCCGCGGTCGATCGGTATTGCCGGTGTTTCA GCTTCCCGCCGCAATTTCGGGCGTATTATTCTGGAAAACGTGCTCAACGAAGGTTTCGGGGCTGAAAACGTCACGGTGTT CCGTCCCGGTGCTGCTCCGGGCGATACACAGGAAGGCGTACGCGTGCTGCCGGAACTGGCCGCGCTGGGGCTTGATGCGG CAGGCGGCAAGGTGGCGCCGCAGAATGCGCTTGATCTGTTTGTAGTGGCTGTGGGGGCACAGCAGGTGCCCGATATGGTG GATGAGATCATCAGACTGGGGGCTGCCCACAGTGTTATGCTCATACCCGGCGGCATGGGTGAAACAGAAAACAGCCGTGA ACGTGCGGCGCGCGTCATAGCGCGCATCAACGATGAACACGGCAGGGGCGACGGCGGGCCGGTGTTTCTGGGCGCCAACT GCATGGGGGTGGTTTCCCGTCCGGGCCGGTATGATACATGGTTCATTCCGGAGCAGAAACTGCCCAAGGACAGAAGCGGC ACCTGCCACAGGGCCGCGCTTGTCAGCCAGAGCGGCGCGTTCATGCTGCACCGCAGCAGCCAGTGCCCCGAACTGAAACC CGCCTATATGATATCCATGGGCAACCAGACAGACCTGACGCTGGGAGACATGGTCACATATTTCAAGGACAGCGATGCGG TGGATGTCATCGCTGTATACGCCGAAGGATTCAATGATCTTGACGGGCTGGCATTCTGCCGCGCTGTGCGCGAAGCTGTC ATAGCCGGAAAGGAAGTTGTTTTTTACAAGGCCGGGCGCACGCCGGAAGGCCGCAGCGCCACCAGCGGACACACTGCTTC GCTGGCCGGCGATTATATGGTCTGCGAAAGCTGCGTACGTCAGGCCGGAGCCATTGTTGCCCGCACCTTTACCGAGTTTC AGGAGCTTTTTCTGCTGGCGGAGAAGCTGTACGGCAAAAAAGTGCGCGGCACCCGGCTGGCGGCTGTGAGCGGAGCGGGC TTTGAGGCCGTGGGCATGGCGGACTCCATCCAGTCCGATGATTACCGCATGGAACTGGCGTCGTTTTCCGCTTCAACAGT GGCAGCCATAAGCGAACTGCTGCGTGGCAAAAAACTCGATGCGCTGGTTACGGTAACCAACCCGCTGGACATCAATCCCG CCGCCGATGACGAAGTGCACGCCGAAGTGGCCCGCCTGCTGGCGGCAGACCCCGCTGTGGACGCCGTTGTCATCGGACTT GACCCGCTGTCACCCTCGGTGCACACGCTGGACAGTCCCGATGTGCCGGATTTTTCCATTCATGAAGAAGGTGCCGTGAC ACGCCGCATCATACAGGTGGCTGCCTGCAGTGATAAGCCCGTGGTGGGCGTGGTGGACGGCGGCAGGTTGTTCGACCCCA TGCGGGCGCAGGTGCTGGCCGGCGGAGTGCCGGTGTTTTCCGTATGCGACAGGGCTGTCTCTTCACTGGCTGTGTACATA GAAGGCAGGCTGCGGGCGGACATACTGCGGGCCTGTGTCCATGACAACAGCTGCAACGGCTGA
Upstream 100 bases:
>100_bases ACACTGGTGTAGGCCCATGTGATACCAAGGCCCGGAGTGTGACGCTTCGGGCCTTTTTTTACCCCGCAACACACTGTAAA AAATTTGAAAGAGCCTCCGC
Downstream 100 bases:
>100_bases CGGAGGCACTCTGTCCGGCCTGTTGACATTCAGCGGCCGCGGCATCAGTCGCGGCCGCATTTTCATGGAACTGCGGACGG AGTGGCATGCTGTGTAAAGC
Product: CoA-binding domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 820; Mature: 819
Protein sequence:
>820_residues MSMTIPIDYSRITDLFRTAREEGRDFLYEYEVYTLLASSGAETPPRANLIPRGARPSDEELMAIPGDRAVLKIVSPAIVH KTEVGGVRIVEKTPDRIRSAMRRMLYEVPENFAACIERDPDHAPLPYRGLRGETLQAAISRDLKGVLQVQFMPPDSGAFG NELIVGLRRTREFGTVISAGLGGTDTELYAERFRKGQAVVAASTQLTDEDAFFELFRKTISYRKLAGLTRGQQRIVTDEQ LVECFGSFIRMARYFSDANPQAPFVIDELEINPFAFSDYLMVPLDGLCRFSEPAQPANVRPVAKIDRLLHPRSIGIAGVS ASRRNFGRIILENVLNEGFGAENVTVFRPGAAPGDTQEGVRVLPELAALGLDAAGGKVAPQNALDLFVVAVGAQQVPDMV DEIIRLGAAHSVMLIPGGMGETENSRERAARVIARINDEHGRGDGGPVFLGANCMGVVSRPGRYDTWFIPEQKLPKDRSG TCHRAALVSQSGAFMLHRSSQCPELKPAYMISMGNQTDLTLGDMVTYFKDSDAVDVIAVYAEGFNDLDGLAFCRAVREAV IAGKEVVFYKAGRTPEGRSATSGHTASLAGDYMVCESCVRQAGAIVARTFTEFQELFLLAEKLYGKKVRGTRLAAVSGAG FEAVGMADSIQSDDYRMELASFSASTVAAISELLRGKKLDALVTVTNPLDINPAADDEVHAEVARLLAADPAVDAVVIGL DPLSPSVHTLDSPDVPDFSIHEEGAVTRRIIQVAACSDKPVVGVVDGGRLFDPMRAQVLAGGVPVFSVCDRAVSSLAVYI EGRLRADILRACVHDNSCNG
Sequences:
>Translated_820_residues MSMTIPIDYSRITDLFRTAREEGRDFLYEYEVYTLLASSGAETPPRANLIPRGARPSDEELMAIPGDRAVLKIVSPAIVH KTEVGGVRIVEKTPDRIRSAMRRMLYEVPENFAACIERDPDHAPLPYRGLRGETLQAAISRDLKGVLQVQFMPPDSGAFG NELIVGLRRTREFGTVISAGLGGTDTELYAERFRKGQAVVAASTQLTDEDAFFELFRKTISYRKLAGLTRGQQRIVTDEQ LVECFGSFIRMARYFSDANPQAPFVIDELEINPFAFSDYLMVPLDGLCRFSEPAQPANVRPVAKIDRLLHPRSIGIAGVS ASRRNFGRIILENVLNEGFGAENVTVFRPGAAPGDTQEGVRVLPELAALGLDAAGGKVAPQNALDLFVVAVGAQQVPDMV DEIIRLGAAHSVMLIPGGMGETENSRERAARVIARINDEHGRGDGGPVFLGANCMGVVSRPGRYDTWFIPEQKLPKDRSG TCHRAALVSQSGAFMLHRSSQCPELKPAYMISMGNQTDLTLGDMVTYFKDSDAVDVIAVYAEGFNDLDGLAFCRAVREAV IAGKEVVFYKAGRTPEGRSATSGHTASLAGDYMVCESCVRQAGAIVARTFTEFQELFLLAEKLYGKKVRGTRLAAVSGAG FEAVGMADSIQSDDYRMELASFSASTVAAISELLRGKKLDALVTVTNPLDINPAADDEVHAEVARLLAADPAVDAVVIGL DPLSPSVHTLDSPDVPDFSIHEEGAVTRRIIQVAACSDKPVVGVVDGGRLFDPMRAQVLAGGVPVFSVCDRAVSSLAVYI EGRLRADILRACVHDNSCNG >Mature_819_residues SMTIPIDYSRITDLFRTAREEGRDFLYEYEVYTLLASSGAETPPRANLIPRGARPSDEELMAIPGDRAVLKIVSPAIVHK TEVGGVRIVEKTPDRIRSAMRRMLYEVPENFAACIERDPDHAPLPYRGLRGETLQAAISRDLKGVLQVQFMPPDSGAFGN ELIVGLRRTREFGTVISAGLGGTDTELYAERFRKGQAVVAASTQLTDEDAFFELFRKTISYRKLAGLTRGQQRIVTDEQL VECFGSFIRMARYFSDANPQAPFVIDELEINPFAFSDYLMVPLDGLCRFSEPAQPANVRPVAKIDRLLHPRSIGIAGVSA SRRNFGRIILENVLNEGFGAENVTVFRPGAAPGDTQEGVRVLPELAALGLDAAGGKVAPQNALDLFVVAVGAQQVPDMVD EIIRLGAAHSVMLIPGGMGETENSRERAARVIARINDEHGRGDGGPVFLGANCMGVVSRPGRYDTWFIPEQKLPKDRSGT CHRAALVSQSGAFMLHRSSQCPELKPAYMISMGNQTDLTLGDMVTYFKDSDAVDVIAVYAEGFNDLDGLAFCRAVREAVI AGKEVVFYKAGRTPEGRSATSGHTASLAGDYMVCESCVRQAGAIVARTFTEFQELFLLAEKLYGKKVRGTRLAAVSGAGF EAVGMADSIQSDDYRMELASFSASTVAAISELLRGKKLDALVTVTNPLDINPAADDEVHAEVARLLAADPAVDAVVIGLD PLSPSVHTLDSPDVPDFSIHEEGAVTRRIIQVAACSDKPVVGVVDGGRLFDPMRAQVLAGGVPVFSVCDRAVSSLAVYIE GRLRADILRACVHDNSCNG
Specific function: Unknown
COG id: COG1042
COG function: function code C; Acyl-CoA synthetase (NDP forming)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yfiQ [H]
Homologues:
Organism=Escherichia coli, GI1788938, Length=421, Percent_Identity=22.5653206650831, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014089 - InterPro: IPR013650 - InterPro: IPR003781 - InterPro: IPR016040 - InterPro: IPR005809 - InterPro: IPR016102 [H]
Pfam domain/function: PF08442 ATP-grasp_2; PF02629 CoA_binding [H]
EC number: NA
Molecular weight: Translated: 88648; Mature: 88517
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMTIPIDYSRITDLFRTAREEGRDFLYEYEVYTLLASSGAETPPRANLIPRGARPSDEE CCEEECCCHHHHHHHHHHHHHHCCHHEEEHHHEEEEECCCCCCCCCCCCCCCCCCCCCCC LMAIPGDRAVLKIVSPAIVHKTEVGGVRIVEKTPDRIRSAMRRMLYEVPENFAACIERDP EEECCCCCHHHHHHCHHHHEEECCCCEEEEECCHHHHHHHHHHHHHHCCHHHHHHHCCCC DHAPLPYRGLRGETLQAAISRDLKGVLQVQFMPPDSGAFGNELIVGLRRTREFGTVISAG CCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC LGGTDTELYAERFRKGQAVVAASTQLTDEDAFFELFRKTISYRKLAGLTRGQQRIVTDEQ CCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHH LVECFGSFIRMARYFSDANPQAPFVIDELEINPFAFSDYLMVPLDGLCRFSEPAQPANVR HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEECCEEEECCHHHHCCCCCCCCCCCC PVAKIDRLLHPRSIGIAGVSASRRNFGRIILENVLNEGFGAENVTVFRPGAAPGDTQEGV HHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHH RVLPELAALGLDAAGGKVAPQNALDLFVVAVGAQQVPDMVDEIIRLGAAHSVMLIPGGMG HHHHHHHHHCCCCCCCCCCCCHHHEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC ETENSRERAARVIARINDEHGRGDGGPVFLGANCMGVVSRPGRYDTWFIPEQKLPKDRSG CCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCEEEECCCCCCCCEEECCHHCCCCCCCC TCHRAALVSQSGAFMLHRSSQCPELKPAYMISMGNQTDLTLGDMVTYFKDSDAVDVIAVY CHHHHHHHCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCEEEEEE AEGFNDLDGLAFCRAVREAVIAGKEVVFYKAGRTPEGRSATSGHTASLAGDYMVCESCVR CCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHCCCHHHHHHHHH QAGAIVARTFTEFQELFLLAEKLYGKKVRGTRLAAVSGAGFEAVGMADSIQSDDYRMELA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCHHCCCCCCCEEHHH SFSASTVAAISELLRGKKLDALVTVTNPLDINPAADDEVHAEVARLLAADPAVDAVVIGL HCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEC DPLSPSVHTLDSPDVPDFSIHEEGAVTRRIIQVAACSDKPVVGVVDGGRLFDPMRAQVLA CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH GGVPVFSVCDRAVSSLAVYIEGRLRADILRACVHDNSCNG CCCHHHHHHHHHHHHEEEEEECHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SMTIPIDYSRITDLFRTAREEGRDFLYEYEVYTLLASSGAETPPRANLIPRGARPSDEE CEEECCCHHHHHHHHHHHHHHCCHHEEEHHHEEEEECCCCCCCCCCCCCCCCCCCCCCC LMAIPGDRAVLKIVSPAIVHKTEVGGVRIVEKTPDRIRSAMRRMLYEVPENFAACIERDP EEECCCCCHHHHHHCHHHHEEECCCCEEEEECCHHHHHHHHHHHHHHCCHHHHHHHCCCC DHAPLPYRGLRGETLQAAISRDLKGVLQVQFMPPDSGAFGNELIVGLRRTREFGTVISAG CCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC LGGTDTELYAERFRKGQAVVAASTQLTDEDAFFELFRKTISYRKLAGLTRGQQRIVTDEQ CCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHH LVECFGSFIRMARYFSDANPQAPFVIDELEINPFAFSDYLMVPLDGLCRFSEPAQPANVR HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEECCEEEECCHHHHCCCCCCCCCCCC PVAKIDRLLHPRSIGIAGVSASRRNFGRIILENVLNEGFGAENVTVFRPGAAPGDTQEGV HHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHH RVLPELAALGLDAAGGKVAPQNALDLFVVAVGAQQVPDMVDEIIRLGAAHSVMLIPGGMG HHHHHHHHHCCCCCCCCCCCCHHHEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC ETENSRERAARVIARINDEHGRGDGGPVFLGANCMGVVSRPGRYDTWFIPEQKLPKDRSG CCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCEEEECCCCCCCCEEECCHHCCCCCCCC TCHRAALVSQSGAFMLHRSSQCPELKPAYMISMGNQTDLTLGDMVTYFKDSDAVDVIAVY CHHHHHHHCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCEEEEEE AEGFNDLDGLAFCRAVREAVIAGKEVVFYKAGRTPEGRSATSGHTASLAGDYMVCESCVR CCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHCCCHHHHHHHHH QAGAIVARTFTEFQELFLLAEKLYGKKVRGTRLAAVSGAGFEAVGMADSIQSDDYRMELA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCHHCCCCCCCEEHHH SFSASTVAAISELLRGKKLDALVTVTNPLDINPAADDEVHAEVARLLAADPAVDAVVIGL HCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEC DPLSPSVHTLDSPDVPDFSIHEEGAVTRRIIQVAACSDKPVVGVVDGGRLFDPMRAQVLA CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH GGVPVFSVCDRAVSSLAVYIEGRLRADILRACVHDNSCNG CCCHHHHHHHHHHHHEEEEEECHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]