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The map label for this gene is ydcP [C]

Identifier: 78355105

GI number: 78355105

Start: 47667

End: 49913

Strand: Direct

Name: ydcP [C]

Synonym: Dde_0058

Alternate gene names: 78355105

Gene position: 47667-49913 (Clockwise)

Preceding gene: 78355102

Following gene: 78355108

Centisome position: 1.28

GC content: 62.26

Gene sequence:

>2247_bases
ATGACAAGAGGAACCCGCCGGTGTTCCGATTTGCAGCGCTGCCGGATTTTTTTTGCGGGCGGCACCCCGTGGCGGAATCA
TTGCTGTTGCATCTGGGCCCGACTATGGTTAGATGCAGGGTTGCAGGCGGAACTGTGCCGGGGTGCTGGTCTGTCTGCCG
CGTGCCGTGTATCTGACGGAACTCCTTTCAGACATGGCCGTCCGGCTGCCTTGCCGCGCAGAGTGCGCTGGTGCGGCCGT
ATTCCTTCCGCCCCGCAACGGAATCTGATCATGAAAAAATTACCCGAAATACTTGCCCCTGCAGGCGATACGCAGTCTTT
TCTTGCGGCACTGGCCGCCGGCGCCGACGCCGTGTACGTGGGCATGAAACATTTTTCCGCCCGTATGCAGGCCGACAACT
TTTCCGTCAAGGAACTGGCCCGCATGGTTGAACTGGCAAGGCGCGAAGACCGCAAAGTTTACATAGCGCTCAACTCCATG
CTTAAACCGACCGACCCTGCCGCGGCGGGACGGCTCATACGGCGGCTTGCGCGCGGTGTGCAGCCCCATGCGCTTATCAT
GCAGGACCTCGGCGCCGTGGAGATGGCCAGACAGGCGGGATTTGAAGGTGAAATTCACCTTTCGACACTGGCCAACATAA
CGCACCCTGCAGCGTTGCACGCTGCCCGCCGCATGGGGGCGGACCGTGTCATTCTGCCGCGCGAGCTGGATATAGACGAG
GTGCGCCAGTGTAACGACGCCTGTCCCGAAGGGCTTGATCTGGAGCTTTTTGTGCACGGGGCCCTGTGCTACTGCGTTTC
GGGCCGCTGCTACTGGTCCAGTTACATGGGGGGCAAGTCGGGGCTTCGGGGACGCTGTGTGCAGCCCTGCCGCCGTGTGT
ACAAGCAGAAGAGCCGCGAGGGGCGGTATTTCTCGTGCCTCGACCTTTCGCTGGACGTGCTGGCCCGCAACCTGCTGGAC
ATGGAAAATCTGTCGTCGTGGAAGATAGAAGGGCGCAAGAAAGGCCCCCACTATGTTTTTTACACTGTCACGGCATACCG
CATGCTGCGCGACAATCCGGGCGATCCTTCGGTACGCAAGCAGGCAGAAGACCTGCTGAAGCAGGCGCTCAGCCGTCCCA
CTACCCATGCCCGTTTTCTGCCGCAGCGCCAGCATCCGGTGACGGCCCCCAACGATTCGACCAGTTCCGGCATGCTTGTG
GGCAAACTGGCGCGCGATAAAAAGGGTGCGCTGGAGTTCAAGCCCCGTATGGAGCTGCAGCCGCAGGACTTTTTGCGTGT
CGGGTTCGAGGATGATCCGTGGCACCGCACTGTGCGCGTGACCCGCAGAGTGCCCAAGGGCGGGGCATTTACTCTGCCCC
ATGCCAAGGGGCGGCCGCCCGCGGCGGGAACTCCCGTATTTCTGATCGACCGGCGCGAGAAAGACCTTGTGGACCTGCTG
CGCCGCTGGGAAGGCCGTCTGGCCGACGTGCGCGGCGGCAGCGAGACCTCCGTGGATTTCGAACCGGTGCTGCCGGTACG
TCTGGACAAGCCGGGCAAAGGGTTTACCGTGCTGCTGCACGGCAGTATTCCCAAAGGCAGGCGCGGCGGACGCGAAGGCG
GCGTGGTGGACGGACTGTGGCTGTCTCCCCGCACAGCCGAAGTGTCGCGGACGCTGGTCTCACGGTATTCGTGGTGGCTG
CCGCCCGTGATCTGGCCCAACGAGGAAGACCAGTGGAAACGCCTTATCACGCAGGTGCTGCGCAACGGCGCCCGTCATTT
TGTACTGGGAGCCCCGTGGCAGATGGAGCTTTTTCCGGAAAATGCCAAAATAGCGCCTGTGGCCGGTCCTTTCTGCAACG
TGGCCAACCCCGCCGCTCTGGCCGTGCTGGAGCGCATGGGGTTCCGCGGGGCCATAGTAAGCCCCGAGCTGTCGGGCGAA
GAAGTGCTTTCTCTGCCGTCCATGAGCCCCCTGCCCCTCGGGGTGGTGCTTTCGGGCTACTGGCCCATGGGGGTCACGCG
TAATCCGCTGCAGCCGCTCAAACAGGGCGAACCCTTCCTCAGTCCCAAGCGTGAACCTTTCTGGGCGCGCCGCTACGGGC
AGAATACGTGGATTTTCCCGGGGTGGCCGCTGGATATCACCGCTCATCAGGATGAACTGAAGGCAGCGGGGTATACGATC
TTTGTTCATATGAAAGAGCAGCCGCCGCGCGAAGTGCCTGAGCCGTCGCGCAGCAGTTCCTTCAACTGGGATCTGACGCT
GCTTTGA

Upstream 100 bases:

>100_bases
GTTCTTCTGCGCGGCGGGCCGCGCAGAGTGGGCGGCAAAGGCAGGTAAGCGGAGATTTACATGCGGCGCGGCTGCAAACT
CATAGTGTTTTCATCGGCGC

Downstream 100 bases:

>100_bases
TGCGTACAGCAAAGACCGGACGGGTATCCGTCCGGTCTTTTTGTATGCAGAGTCCGCAGCGTGTCTTTGCAGCCGGTACG
GGCCGGCAGCGGGACAGGTA

Product: U32 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 748; Mature: 747

Protein sequence:

>748_residues
MTRGTRRCSDLQRCRIFFAGGTPWRNHCCCIWARLWLDAGLQAELCRGAGLSAACRVSDGTPFRHGRPAALPRRVRWCGR
IPSAPQRNLIMKKLPEILAPAGDTQSFLAALAAGADAVYVGMKHFSARMQADNFSVKELARMVELARREDRKVYIALNSM
LKPTDPAAAGRLIRRLARGVQPHALIMQDLGAVEMARQAGFEGEIHLSTLANITHPAALHAARRMGADRVILPRELDIDE
VRQCNDACPEGLDLELFVHGALCYCVSGRCYWSSYMGGKSGLRGRCVQPCRRVYKQKSREGRYFSCLDLSLDVLARNLLD
MENLSSWKIEGRKKGPHYVFYTVTAYRMLRDNPGDPSVRKQAEDLLKQALSRPTTHARFLPQRQHPVTAPNDSTSSGMLV
GKLARDKKGALEFKPRMELQPQDFLRVGFEDDPWHRTVRVTRRVPKGGAFTLPHAKGRPPAAGTPVFLIDRREKDLVDLL
RRWEGRLADVRGGSETSVDFEPVLPVRLDKPGKGFTVLLHGSIPKGRRGGREGGVVDGLWLSPRTAEVSRTLVSRYSWWL
PPVIWPNEEDQWKRLITQVLRNGARHFVLGAPWQMELFPENAKIAPVAGPFCNVANPAALAVLERMGFRGAIVSPELSGE
EVLSLPSMSPLPLGVVLSGYWPMGVTRNPLQPLKQGEPFLSPKREPFWARRYGQNTWIFPGWPLDITAHQDELKAAGYTI
FVHMKEQPPREVPEPSRSSSFNWDLTLL

Sequences:

>Translated_748_residues
MTRGTRRCSDLQRCRIFFAGGTPWRNHCCCIWARLWLDAGLQAELCRGAGLSAACRVSDGTPFRHGRPAALPRRVRWCGR
IPSAPQRNLIMKKLPEILAPAGDTQSFLAALAAGADAVYVGMKHFSARMQADNFSVKELARMVELARREDRKVYIALNSM
LKPTDPAAAGRLIRRLARGVQPHALIMQDLGAVEMARQAGFEGEIHLSTLANITHPAALHAARRMGADRVILPRELDIDE
VRQCNDACPEGLDLELFVHGALCYCVSGRCYWSSYMGGKSGLRGRCVQPCRRVYKQKSREGRYFSCLDLSLDVLARNLLD
MENLSSWKIEGRKKGPHYVFYTVTAYRMLRDNPGDPSVRKQAEDLLKQALSRPTTHARFLPQRQHPVTAPNDSTSSGMLV
GKLARDKKGALEFKPRMELQPQDFLRVGFEDDPWHRTVRVTRRVPKGGAFTLPHAKGRPPAAGTPVFLIDRREKDLVDLL
RRWEGRLADVRGGSETSVDFEPVLPVRLDKPGKGFTVLLHGSIPKGRRGGREGGVVDGLWLSPRTAEVSRTLVSRYSWWL
PPVIWPNEEDQWKRLITQVLRNGARHFVLGAPWQMELFPENAKIAPVAGPFCNVANPAALAVLERMGFRGAIVSPELSGE
EVLSLPSMSPLPLGVVLSGYWPMGVTRNPLQPLKQGEPFLSPKREPFWARRYGQNTWIFPGWPLDITAHQDELKAAGYTI
FVHMKEQPPREVPEPSRSSSFNWDLTLL
>Mature_747_residues
TRGTRRCSDLQRCRIFFAGGTPWRNHCCCIWARLWLDAGLQAELCRGAGLSAACRVSDGTPFRHGRPAALPRRVRWCGRI
PSAPQRNLIMKKLPEILAPAGDTQSFLAALAAGADAVYVGMKHFSARMQADNFSVKELARMVELARREDRKVYIALNSML
KPTDPAAAGRLIRRLARGVQPHALIMQDLGAVEMARQAGFEGEIHLSTLANITHPAALHAARRMGADRVILPRELDIDEV
RQCNDACPEGLDLELFVHGALCYCVSGRCYWSSYMGGKSGLRGRCVQPCRRVYKQKSREGRYFSCLDLSLDVLARNLLDM
ENLSSWKIEGRKKGPHYVFYTVTAYRMLRDNPGDPSVRKQAEDLLKQALSRPTTHARFLPQRQHPVTAPNDSTSSGMLVG
KLARDKKGALEFKPRMELQPQDFLRVGFEDDPWHRTVRVTRRVPKGGAFTLPHAKGRPPAAGTPVFLIDRREKDLVDLLR
RWEGRLADVRGGSETSVDFEPVLPVRLDKPGKGFTVLLHGSIPKGRRGGREGGVVDGLWLSPRTAEVSRTLVSRYSWWLP
PVIWPNEEDQWKRLITQVLRNGARHFVLGAPWQMELFPENAKIAPVAGPFCNVANPAALAVLERMGFRGAIVSPELSGEE
VLSLPSMSPLPLGVVLSGYWPMGVTRNPLQPLKQGEPFLSPKREPFWARRYGQNTWIFPGWPLDITAHQDELKAAGYTIF
VHMKEQPPREVPEPSRSSSFNWDLTLL

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=263, Percent_Identity=36.5019011406844, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI1788397, Length=209, Percent_Identity=36.8421052631579, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI1789548, Length=300, Percent_Identity=31.3333333333333, Blast_Score=110, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539
- InterPro:   IPR009000 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 83800; Mature: 83669

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRGTRRCSDLQRCRIFFAGGTPWRNHCCCIWARLWLDAGLQAELCRGAGLSAACRVSDG
CCCCCHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCEEEEECCC
TPFRHGRPAALPRRVRWCGRIPSAPQRNLIMKKLPEILAPAGDTQSFLAALAAGADAVYV
CCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEE
GMKHFSARMQADNFSVKELARMVELARREDRKVYIALNSMLKPTDPAAAGRLIRRLARGV
EHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCC
QPHALIMQDLGAVEMARQAGFEGEIHLSTLANITHPAALHAARRMGADRVILPRELDIDE
CCHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHCCCHHHHHHHHHCCCCEEECCCCCCHHH
VRQCNDACPEGLDLELFVHGALCYCVSGRCYWSSYMGGKSGLRGRCVQPCRRVYKQKSRE
HHHHHHCCCCCCCEEEEECCEEEEEECCCEEEHHHCCCCCCCCCHHHHHHHHHHHHHCCC
GRYFSCLDLSLDVLARNLLDMENLSSWKIEGRKKGPHYVFYTVTAYRMLRDNPGDPSVRK
CCEEEEECCCHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEHHHHHHHHHCCCCCCHHHH
QAEDLLKQALSRPTTHARFLPQRQHPVTAPNDSTSSGMLVGKLARDKKGALEFKPRMELQ
HHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEHHCCCCCCEEECCCCCCC
PQDFLRVGFEDDPWHRTVRVTRRVPKGGAFTLPHAKGRPPAAGTPVFLIDRREKDLVDLL
HHHHHCCCCCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCEEEEECCCHHHHHHH
RRWEGRLADVRGGSETSVDFEPVLPVRLDKPGKGFTVLLHGSIPKGRRGGREGGVVDGLW
HHHCCCEEECCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCEECEE
LSPRTAEVSRTLVSRYSWWLPPVIWPNEEDQWKRLITQVLRNGARHFVLGAPWQMELFPE
CCCCHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEECCEEEEEECC
NAKIAPVAGPFCNVANPAALAVLERMGFRGAIVSPELSGEEVLSLPSMSPLPLGVVLSGY
CCEECCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHCCCCCCCCCCEEEEECC
WPMGVTRNPLQPLKQGEPFLSPKREPFWARRYGQNTWIFPGWPLDITAHQDELKAAGYTI
CCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHCCCCCEECCCCCEEEECCHHHHHHCCEEE
FVHMKEQPPREVPEPSRSSSFNWDLTLL
EEEECCCCCCCCCCCCCCCCCCEEEEEC
>Mature Secondary Structure 
TRGTRRCSDLQRCRIFFAGGTPWRNHCCCIWARLWLDAGLQAELCRGAGLSAACRVSDG
CCCCHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCEEEEECCC
TPFRHGRPAALPRRVRWCGRIPSAPQRNLIMKKLPEILAPAGDTQSFLAALAAGADAVYV
CCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEE
GMKHFSARMQADNFSVKELARMVELARREDRKVYIALNSMLKPTDPAAAGRLIRRLARGV
EHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCC
QPHALIMQDLGAVEMARQAGFEGEIHLSTLANITHPAALHAARRMGADRVILPRELDIDE
CCHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHCCCHHHHHHHHHCCCCEEECCCCCCHHH
VRQCNDACPEGLDLELFVHGALCYCVSGRCYWSSYMGGKSGLRGRCVQPCRRVYKQKSRE
HHHHHHCCCCCCCEEEEECCEEEEEECCCEEEHHHCCCCCCCCCHHHHHHHHHHHHHCCC
GRYFSCLDLSLDVLARNLLDMENLSSWKIEGRKKGPHYVFYTVTAYRMLRDNPGDPSVRK
CCEEEEECCCHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEHHHHHHHHHCCCCCCHHHH
QAEDLLKQALSRPTTHARFLPQRQHPVTAPNDSTSSGMLVGKLARDKKGALEFKPRMELQ
HHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEHHCCCCCCEEECCCCCCC
PQDFLRVGFEDDPWHRTVRVTRRVPKGGAFTLPHAKGRPPAAGTPVFLIDRREKDLVDLL
HHHHHCCCCCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCEEEEECCCHHHHHHH
RRWEGRLADVRGGSETSVDFEPVLPVRLDKPGKGFTVLLHGSIPKGRRGGREGGVVDGLW
HHHCCCEEECCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCEECEE
LSPRTAEVSRTLVSRYSWWLPPVIWPNEEDQWKRLITQVLRNGARHFVLGAPWQMELFPE
CCCCHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEECCEEEEEECC
NAKIAPVAGPFCNVANPAALAVLERMGFRGAIVSPELSGEEVLSLPSMSPLPLGVVLSGY
CCEECCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHCCCCCCCCCCEEEEECC
WPMGVTRNPLQPLKQGEPFLSPKREPFWARRYGQNTWIFPGWPLDITAHQDELKAAGYTI
CCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHCCCCCEECCCCCEEEECCHHHHHHCCEEE
FVHMKEQPPREVPEPSRSSSFNWDLTLL
EEEECCCCCCCCCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]