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The map label for this gene is vhcD [H]

Identifier: 78224617

GI number: 78224617

Start: 3847250

End: 3847756

Strand: Direct

Name: vhcD [H]

Synonym: Gmet_3427

Alternate gene names: 78224617

Gene position: 3847250-3847756 (Clockwise)

Preceding gene: 78224616

Following gene: 78224618

Centisome position: 96.24

GC content: 66.67

Gene sequence:

>507_bases
ATGCATGTAAAACCAAACCACACATTCGAACCGAAGATCGTCGCCTTTGTCTGCACCTGGTGCACCTACGCCGGGGCGGA
CCTGGCGGGGACCGCGCGCCTGCAGTACCCGGCCAACACCCGGGTGGTGAAGTTCCCCTGCACCGGGCGGATCGACCCGG
TCTTTATCCTGCGGGCCTTCCAGAAGGGGGCCGACGGGGTGCTGGTCTCCGGGTGCCACCCCGGGGACTGCCACTACATG
GCGGGCAACTTCCACGCCCGACGCCGCTTTGCCGCCTTCCGGGCGCTTCTGGACTTCATCGGGGTGGACCTGCAGCGGCT
CCAGTTCTCCTGGGTCTCCGCCGCCGAGGGGGGCAAATGGGTCGAGGTGGCCACGGAGCTCACCGAACGGGTCCGGGCAC
TGGGGCCGATGCGGGAGTTCAAGGAACTGGAGGCGCAGGAGCAGTGGTCCGGAGCAATAGACTCTCCGGAGCTGCAGGAA
GCGTACGAGGCGGTGGGGAACATCTGA

Upstream 100 bases:

>100_bases
CCGAAGTTACCCTCTTGCCGAGAGTACAGGGTAAGTGGGCGTTGTTTTCGACTTTTCTCTGTGCTCTCTGTGTCCTCTGT
GGCTAGAGAAGGTTTTAAAA

Downstream 100 bases:

>100_bases
CATGAACACTACGGCTCAACAACTCGATACCACCGCCATCGCCCCTGCGGTCTACGCGACCATTACCGACGCCATCTGCC
GGGAAGCTGAGAAAGCCCTG

Product: methyl-viologen-reducing hydrogenase subunit delta

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MHVKPNHTFEPKIVAFVCTWCTYAGADLAGTARLQYPANTRVVKFPCTGRIDPVFILRAFQKGADGVLVSGCHPGDCHYM
AGNFHARRRFAAFRALLDFIGVDLQRLQFSWVSAAEGGKWVEVATELTERVRALGPMREFKELEAQEQWSGAIDSPELQE
AYEAVGNI

Sequences:

>Translated_168_residues
MHVKPNHTFEPKIVAFVCTWCTYAGADLAGTARLQYPANTRVVKFPCTGRIDPVFILRAFQKGADGVLVSGCHPGDCHYM
AGNFHARRRFAAFRALLDFIGVDLQRLQFSWVSAAEGGKWVEVATELTERVRALGPMREFKELEAQEQWSGAIDSPELQE
AYEAVGNI
>Mature_168_residues
MHVKPNHTFEPKIVAFVCTWCTYAGADLAGTARLQYPANTRVVKFPCTGRIDPVFILRAFQKGADGVLVSGCHPGDCHYM
AGNFHARRRFAAFRALLDFIGVDLQRLQFSWVSAAEGGKWVEVATELTERVRALGPMREFKELEAQEQWSGAIDSPELQE
AYEAVGNI

Specific function: Unknown

COG id: COG1908

COG function: function code C; Coenzyme F420-reducing hydrogenase, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mvhD/vhuD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003813 [H]

Pfam domain/function: PF02662 FlpD [H]

EC number: NA

Molecular weight: Translated: 18719; Mature: 18719

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHVKPNHTFEPKIVAFVCTWCTYAGADLAGTARLQYPANTRVVKFPCTGRIDPVFILRAF
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEECCCCCCCCHHHHHHHH
QKGADGVLVSGCHPGDCHYMAGNFHARRRFAAFRALLDFIGVDLQRLQFSWVSAAEGGKW
HCCCCCEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCH
VEVATELTERVRALGPMREFKELEAQEQWSGAIDSPELQEAYEAVGNI
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MHVKPNHTFEPKIVAFVCTWCTYAGADLAGTARLQYPANTRVVKFPCTGRIDPVFILRAF
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEECCCCCCCCHHHHHHHH
QKGADGVLVSGCHPGDCHYMAGNFHARRRFAAFRALLDFIGVDLQRLQFSWVSAAEGGKW
HCCCCCEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCH
VEVATELTERVRALGPMREFKELEAQEQWSGAIDSPELQEAYEAVGNI
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1603063 [H]