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The map label for this gene is flgD [H]

Identifier: 78224297

GI number: 78224297

Start: 3503838

End: 3504494

Strand: Reverse

Name: flgD [H]

Synonym: Gmet_3105

Alternate gene names: 78224297

Gene position: 3504494-3503838 (Counterclockwise)

Preceding gene: 78224298

Following gene: 78224296

Centisome position: 87.67

GC content: 61.49

Gene sequence:

>657_bases
GTGGTAAACGGAATCACCACTGACACGACAGCGGCGGCAGCGGCCATGAAGAAGTCCACCGGCATGAACAAGGACGACTT
CCTCAAGCTGTTCGTCACCCAGCTCCAGCATCAGGACCCCCTGAACCCCGCGGACAGTTCGGAGTTCATCGGCCAGCTGG
CGCAGCTGACCCAGGTGGAGCAAGCCTACAACACCAACTCCAACCTGACCAAAATCATCGACCTGTTCAACGGCGCCACG
AGCCTCTCGTCGGTCTCGTACATCGGCAAGTCGGTAACGGCCAACGGCGATCAGATCAACCTCACCGCCGGCTCCAAACC
GGCCCTCGGCTACCGGCTCCCGGCCGATGCGCAACAGGTGGCCATCAACATCTCTGATATCAGCGGCACCGTGGTCCGGA
CCCTGAACCTGGGAAATACCCGGGCCGGCGACGGCACGATCCTCTGGGACGGGAGAAACGGCAACGGAAGTACGCTGCCG
GCAGGGCAGTACAGCTTCAGCGTGACCGGCTACAATGCCAAGGGGGAGAAGTTCCAGGGGAACCCGCTTCTCGTCGGCAC
GGTGGAAGGGATAACGCTGGAAGGAAAGGAACCCAACGTAACCATCGGCGGCATCAGCGTGCCGCTCAGCAACGTACTCT
CGGTGAAAGGAGCGTGA

Upstream 100 bases:

>100_bases
CCGACCGGCGCGACTCGATCCTCGACGTAAGACTATAGGGACTCGGAACAAACAAATTATCAGTTCATTCCAAGCCCCTT
AGAAAAGGAGGTGCACAATT

Downstream 100 bases:

>100_bases
GGAAGGGATGATCGACAAGATCTATTTTCCCGAACCACTCCCCATCAACCCGGGACAGAAACCGGCGCAACCGCAACCGG
CGAAGCAGGGGGGCGCACAG

Product: flagellar hook capping protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MVNGITTDTTAAAAAMKKSTGMNKDDFLKLFVTQLQHQDPLNPADSSEFIGQLAQLTQVEQAYNTNSNLTKIIDLFNGAT
SLSSVSYIGKSVTANGDQINLTAGSKPALGYRLPADAQQVAINISDISGTVVRTLNLGNTRAGDGTILWDGRNGNGSTLP
AGQYSFSVTGYNAKGEKFQGNPLLVGTVEGITLEGKEPNVTIGGISVPLSNVLSVKGA

Sequences:

>Translated_218_residues
MVNGITTDTTAAAAAMKKSTGMNKDDFLKLFVTQLQHQDPLNPADSSEFIGQLAQLTQVEQAYNTNSNLTKIIDLFNGAT
SLSSVSYIGKSVTANGDQINLTAGSKPALGYRLPADAQQVAINISDISGTVVRTLNLGNTRAGDGTILWDGRNGNGSTLP
AGQYSFSVTGYNAKGEKFQGNPLLVGTVEGITLEGKEPNVTIGGISVPLSNVLSVKGA
>Mature_218_residues
MVNGITTDTTAAAAAMKKSTGMNKDDFLKLFVTQLQHQDPLNPADSSEFIGQLAQLTQVEQAYNTNSNLTKIIDLFNGAT
SLSSVSYIGKSVTANGDQINLTAGSKPALGYRLPADAQQVAINISDISGTVVRTLNLGNTRAGDGTILWDGRNGNGSTLP
AGQYSFSVTGYNAKGEKFQGNPLLVGTVEGITLEGKEPNVTIGGISVPLSNVLSVKGA

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=175, Percent_Identity=32.5714285714286, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 22680; Mature: 22680

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNGITTDTTAAAAAMKKSTGMNKDDFLKLFVTQLQHQDPLNPADSSEFIGQLAQLTQVE
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
QAYNTNSNLTKIIDLFNGATSLSSVSYIGKSVTANGDQINLTAGSKPALGYRLPADAQQV
HHHCCCCCHHHHHHHHCCCCHHHHHHHHCCEEECCCCEEEEECCCCCCCCEECCCCCEEE
AINISDISGTVVRTLNLGNTRAGDGTILWDGRNGNGSTLPAGQYSFSVTGYNAKGEKFQG
EEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCC
NPLLVGTVEGITLEGKEPNVTIGGISVPLSNVLSVKGA
CCEEEEEECCEEEECCCCCEEEEEEECCHHHEEEECCC
>Mature Secondary Structure
MVNGITTDTTAAAAAMKKSTGMNKDDFLKLFVTQLQHQDPLNPADSSEFIGQLAQLTQVE
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
QAYNTNSNLTKIIDLFNGATSLSSVSYIGKSVTANGDQINLTAGSKPALGYRLPADAQQV
HHHCCCCCHHHHHHHHCCCCHHHHHHHHCCEEECCCCEEEEECCCCCCCCEECCCCCEEE
AINISDISGTVVRTLNLGNTRAGDGTILWDGRNGNGSTLPAGQYSFSVTGYNAKGEKFQG
EEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCC
NPLLVGTVEGITLEGKEPNVTIGGISVPLSNVLSVKGA
CCEEEEEECCEEEECCCCCEEEEEEECCHHHEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]