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The map label for this gene is rfbB [H]

Identifier: 78222619

GI number: 78222619

Start: 1575101

End: 1575802

Strand: Direct

Name: rfbB [H]

Synonym: Gmet_1407

Alternate gene names: 78222619

Gene position: 1575101-1575802 (Clockwise)

Preceding gene: 78222618

Following gene: 78222620

Centisome position: 39.4

GC content: 43.73

Gene sequence:

>702_bases
ATGTCCTCTGATGCCTTGTTGATATTTTCTGATGTTTGGAAAAAATACTCTCGTGCAGAAGCATTCCATCGTTCAATCCG
CGAAGACCTAAGCTGTTTTCTCCGGTCTGATCTTAATCTTCGAAATAAGGACGAATTCTGGGCATTAAAAGGGGCGAATT
TTTCATTGCATCCAGGGGAATGTGTCGGCTTGACCGGCCCTAACGGAGCAGGGAAAAGTACAATTTTGAAACTTGTTGCG
CGTGTAACGTCTCCGAGTTCCGGAGATATTCGACAAACGGCGAAAGTTGCACCTCTGATTGAGGTTGGGGCGGGTTTTCA
TCCTGATTTGACCGGTAGACAAAATATCTATATGAACGGGACAATTATAGGGCTGTCTCTTTCTGATATTCGCAAACAGA
TGACAAGCATTATCGATTTTTCTGAATTGGCTGAATTCATTGATACGCCTGTAAAAAAATACTCTTCTGGAATGTATCTA
AAGCTTGCAGTTGCTATCGCATTCCATAGTCCGGCAAAAATTCTATTAGTTGACGAGATCCTTTCGGTGGCGGATGAGTT
GTTCCGGAATAAATGTCTGGAGAGGATTAGACGTTTCTGTGAAGCTGGCGGGGGAGTTGTGCTCGTTTCGCATGATCAAA
GGATACTCAATTCAGTAACTGACCGGACGATCAGGCTGGTTAGTGGCGAAATTGTGTCATAA

Upstream 100 bases:

>100_bases
CCCGTAGATCTTGGTACTTTGACTCTTTTTACAGTTTTGACTTTTACCGCGTTGTTGATAACTTTAAAGCTTTTTGTTCG
GGTTGAGAGGTTATTTGCTG

Downstream 100 bases:

>100_bases
ACCATTGCATATCTTATTTTTTCGTCATAGCCTTCTTGGGCGCGGTGGGGACAAGATGGTCGTTTGCCAGGCGAATGCCC
TTGCTCGGCGCGGCCATCAA

Product: ABC transporter-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MSSDALLIFSDVWKKYSRAEAFHRSIREDLSCFLRSDLNLRNKDEFWALKGANFSLHPGECVGLTGPNGAGKSTILKLVA
RVTSPSSGDIRQTAKVAPLIEVGAGFHPDLTGRQNIYMNGTIIGLSLSDIRKQMTSIIDFSELAEFIDTPVKKYSSGMYL
KLAVAIAFHSPAKILLVDEILSVADELFRNKCLERIRRFCEAGGGVVLVSHDQRILNSVTDRTIRLVSGEIVS

Sequences:

>Translated_233_residues
MSSDALLIFSDVWKKYSRAEAFHRSIREDLSCFLRSDLNLRNKDEFWALKGANFSLHPGECVGLTGPNGAGKSTILKLVA
RVTSPSSGDIRQTAKVAPLIEVGAGFHPDLTGRQNIYMNGTIIGLSLSDIRKQMTSIIDFSELAEFIDTPVKKYSSGMYL
KLAVAIAFHSPAKILLVDEILSVADELFRNKCLERIRRFCEAGGGVVLVSHDQRILNSVTDRTIRLVSGEIVS
>Mature_232_residues
SSDALLIFSDVWKKYSRAEAFHRSIREDLSCFLRSDLNLRNKDEFWALKGANFSLHPGECVGLTGPNGAGKSTILKLVAR
VTSPSSGDIRQTAKVAPLIEVGAGFHPDLTGRQNIYMNGTIIGLSLSDIRKQMTSIIDFSELAEFIDTPVKKYSSGMYLK
LAVAIAFHSPAKILLVDEILSVADELFRNKCLERIRRFCEAGGGVVLVSHDQRILNSVTDRTIRLVSGEIVS

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=190, Percent_Identity=26.3157894736842, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI27477115, Length=192, Percent_Identity=28.6458333333333, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI27262624, Length=213, Percent_Identity=28.169014084507, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI27262626, Length=213, Percent_Identity=28.169014084507, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI6005701, Length=192, Percent_Identity=28.125, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI105990541, Length=185, Percent_Identity=30.8108108108108, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI45446740, Length=187, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI47078218, Length=187, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI153792144, Length=198, Percent_Identity=24.7474747474747, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI30795238, Length=196, Percent_Identity=27.5510204081633, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI27881501, Length=196, Percent_Identity=27.5510204081633, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI31657092, Length=197, Percent_Identity=27.4111675126904, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1790467, Length=211, Percent_Identity=25.5924170616114, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789873, Length=196, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI87081709, Length=193, Percent_Identity=27.979274611399, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1789672, Length=206, Percent_Identity=26.2135922330097, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788761, Length=188, Percent_Identity=27.6595744680851, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786698, Length=195, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87081791, Length=204, Percent_Identity=24.5098039215686, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI87082064, Length=199, Percent_Identity=28.643216080402, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788165, Length=187, Percent_Identity=25.1336898395722, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87081782, Length=167, Percent_Identity=25.748502994012, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=240, Percent_Identity=27.0833333333333, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17565586, Length=177, Percent_Identity=30.5084745762712, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI116007184, Length=197, Percent_Identity=29.9492385786802, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI221500365, Length=197, Percent_Identity=29.9492385786802, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24666092, Length=197, Percent_Identity=28.9340101522843, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI221512771, Length=197, Percent_Identity=30.4568527918782, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24648314, Length=195, Percent_Identity=31.2820512820513, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 25674; Mature: 25543

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSDALLIFSDVWKKYSRAEAFHRSIREDLSCFLRSDLNLRNKDEFWALKGANFSLHPGE
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEECCCC
CVGLTGPNGAGKSTILKLVARVTSPSSGDIRQTAKVAPLIEVGAGFHPDLTGRQNIYMNG
EEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC
TIIGLSLSDIRKQMTSIIDFSELAEFIDTPVKKYSSGMYLKLAVAIAFHSPAKILLVDEI
EEEEEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEEEHHCCCCCHHHHHHHH
LSVADELFRNKCLERIRRFCEAGGGVVLVSHDQRILNSVTDRTIRLVSGEIVS
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SSDALLIFSDVWKKYSRAEAFHRSIREDLSCFLRSDLNLRNKDEFWALKGANFSLHPGE
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEECCCC
CVGLTGPNGAGKSTILKLVARVTSPSSGDIRQTAKVAPLIEVGAGFHPDLTGRQNIYMNG
EEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC
TIIGLSLSDIRKQMTSIIDFSELAEFIDTPVKKYSSGMYLKLAVAIAFHSPAKILLVDEI
EEEEEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEEEHHCCCCCHHHHHHHH
LSVADELFRNKCLERIRRFCEAGGGVVLVSHDQRILNSVTDRTIRLVSGEIVS
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]