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The map label for this gene is rfbA [H]

Identifier: 78222618

GI number: 78222618

Start: 1574281

End: 1575111

Strand: Direct

Name: rfbA [H]

Synonym: Gmet_1406

Alternate gene names: 78222618

Gene position: 1574281-1575111 (Clockwise)

Preceding gene: 78222617

Following gene: 78222619

Centisome position: 39.38

GC content: 38.51

Gene sequence:

>831_bases
ATGGGTTCTAATACTTTTTCGCCAAGTGCATTGCAGGTCGTACTGAGTCGTATAAGCTACTTTCGGCGAATATGGGAATT
TAGGGATCTTTTCTTGGTTTTTGTGTGGCGCGAATTTTCTGTGCGTTACAAACATACACTGATTGGTGCGGCTTGGGCTG
TAATTCAACCATTGTCAATGATGCTGCTGTTTACTTTTGTCTTTAGCTTTGTGTTAAAAATGAAAGTTTCCAACTACCCC
TATGCGGTTTTCTTTTATTCAGGCCTTCTCCCCTGGATGTTTTTCGATTCTGCCATAAAGTACTCTGTCCCAAGTTTTAC
GGCCCATTATGGGCTGATTACTAAAATCTATTTCCCTCGTGAAATTATTCCTTTTTCTTGCATATCTGTGGCAGTAGTCG
ACTTTTTGATATCATTTGTTGTTTATCTGTTTTTGTTGTTGTTTTTTGACATTCCGTTGACGGTAAATATTTTTTATCTG
TTACCGTTGCTGTTTTGTATGATTTTGTTTATTGCTTCGGCTTCACTGATTCTCGCCTGTTTAAATGTCTTTTACCGCGA
CGTACGACTTGCTATCAATTTCATCATGCAACTCTGGTTTTTTGCAACACCGGTGTTTTACAGCACAACACAAATTAAAG
GAACGTTGAAATACGTTCTGTACCTTAATCCCATGACTTTTTTTATTGAAGGCTTTCGAAGTTGTACTCTGTACGGTCAG
CCCGTAGATCTTGGTACTTTGACTCTTTTTACAGTTTTGACTTTTACCGCGTTGTTGATAACTTTAAAGCTTTTTGTTCG
GGTTGAGAGGTTATTTGCTGATGTCCTCTGA

Upstream 100 bases:

>100_bases
GAGCGAGGGCAAAGTGGTGATCCAACCGATATGCTGATGAAAGATCCGGTGCTTTTTTTGACAGGTTTAACGTGGACCTT
GTTTGTAGGTTGGGGAATTT

Downstream 100 bases:

>100_bases
TGCCTTGTTGATATTTTCTGATGTTTGGAAAAAATACTCTCGTGCAGAAGCATTCCATCGTTCAATCCGCGAAGACCTAA
GCTGTTTTCTCCGGTCTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MGSNTFSPSALQVVLSRISYFRRIWEFRDLFLVFVWREFSVRYKHTLIGAAWAVIQPLSMMLLFTFVFSFVLKMKVSNYP
YAVFFYSGLLPWMFFDSAIKYSVPSFTAHYGLITKIYFPREIIPFSCISVAVVDFLISFVVYLFLLLFFDIPLTVNIFYL
LPLLFCMILFIASASLILACLNVFYRDVRLAINFIMQLWFFATPVFYSTTQIKGTLKYVLYLNPMTFFIEGFRSCTLYGQ
PVDLGTLTLFTVLTFTALLITLKLFVRVERLFADVL

Sequences:

>Translated_276_residues
MGSNTFSPSALQVVLSRISYFRRIWEFRDLFLVFVWREFSVRYKHTLIGAAWAVIQPLSMMLLFTFVFSFVLKMKVSNYP
YAVFFYSGLLPWMFFDSAIKYSVPSFTAHYGLITKIYFPREIIPFSCISVAVVDFLISFVVYLFLLLFFDIPLTVNIFYL
LPLLFCMILFIASASLILACLNVFYRDVRLAINFIMQLWFFATPVFYSTTQIKGTLKYVLYLNPMTFFIEGFRSCTLYGQ
PVDLGTLTLFTVLTFTALLITLKLFVRVERLFADVL
>Mature_275_residues
GSNTFSPSALQVVLSRISYFRRIWEFRDLFLVFVWREFSVRYKHTLIGAAWAVIQPLSMMLLFTFVFSFVLKMKVSNYPY
AVFFYSGLLPWMFFDSAIKYSVPSFTAHYGLITKIYFPREIIPFSCISVAVVDFLISFVVYLFLLLFFDIPLTVNIFYLL
PLLFCMILFIASASLILACLNVFYRDVRLAINFIMQLWFFATPVFYSTTQIKGTLKYVLYLNPMTFFIEGFRSCTLYGQP
VDLGTLTLFTVLTFTALLITLKLFVRVERLFADVL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 32211; Mature: 32080

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GSNTFSPSALQVVLSRISYFRRIWEFRDLFLVFVWREFSVRYKHTLIGAAWAVIQPLSM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLLFTFVFSFVLKMKVSNYPYAVFFYSGLLPWMFFDSAIKYSVPSFTAHYGLITKIYFPR
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCH
EIIPFSCISVAVVDFLISFVVYLFLLLFFDIPLTVNIFYLLPLLFCMILFIASASLILAC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNVFYRDVRLAINFIMQLWFFATPVFYSTTQIKGTLKYVLYLNPMTFFIEGFRSCTLYGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHEECCC
PVDLGTLTLFTVLTFTALLITLKLFVRVERLFADVL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]