Click here to switch to the map view.

The map label for this gene is 78222616

Identifier: 78222616

GI number: 78222616

Start: 1571732

End: 1573447

Strand: Direct

Name: 78222616

Synonym: Gmet_1404

Alternate gene names: NA

Gene position: 1571732-1573447 (Clockwise)

Preceding gene: 78222615

Following gene: 78222617

Centisome position: 39.32

GC content: 42.89

Gene sequence:

>1716_bases
ATGAACATTCGTAAATCTTTTCAGGTAATGCTGCTTTGGATGATAGTGCTGGGCATCTTTTATCCGGCTATATTTGCCGG
GTTAAATTCGGTGGATGACCAGAAGATGCTTTATGCCTTGGGAGAATTGCCGAATAGAGCTTTACTGGACTGGTTCCGAC
CTGGACAAAGTTTTTATTATCGACCGTTGTTGTCGTTCACTTTTCGTCTCGATTATCTGCTTTGGGGGCAGGAAGTCAGT
TTCTATCATCTGGAAAACATTTTAATTCATGGTGCCAGCGCCACCTTGATTTTTTTCATCCTCCGGCAACTTGTTTCTCT
CCAAATTCCGCAACAAAAGGACACCGAATGGCCCCTGATTGGGGCATTGCTGTTTGCGCTGCATCCGATAGTAACTGAAT
CGGTTAACTGGATATCTGGACGAACCGATTTGCTCGGTACTTTTTTTGTCTTGTCTGCCACTTTAGTTTTATTGCAGTCC
GCTTTGCGTCGTCGGTTGATATTGGTAATTGCCGCAGCTATTTTGTTGTTTTGTGCCATCTTTTCCAAAGAAGTTATGGT
GTTTTCTATCCCTGCAGCCGCATTTTTGCTTTGGCGATGGAGTGTTGACGCGCCGACTTCTTGGCGGATTAAATCACTTA
CAGTACTTCTTATGCCGTTTTTTTTCGGAGGTTCGGCTTTCATCGCGCTTCGCTGGTTGTTTTATGGTGCGAGTGCGGAC
TTGGATCGTCTAATTTTCAAATATTATTACAGTGCCTACGACACGGTACGAGTCTTTTTCAAGGTGTTGGGGTTCTATGG
GAAAAAGATTGTTGCACCGTTACCGCTCAATTTTGCAATTATGCAGGTTAGTGATCACTATGTCTGGCTGGGAATTGTGA
TTTTTATTTTAGCTGTTTTGCTGTTTTTTCTACGCCGGTCCGCCACCGACTTGATTCTGGTGGGGTGGTATTTGATCTTG
CCCGGCATTCTCATCGCATTGATTGGCTTGGCCTGGACGCCGTTGGCTGAACGCTATGTTTATCTCCCGAGTGCTTTTGT
TGTCATGGGGATAGCTCTTTATGGCTCAAGCGTTCCATCGCAGCGATTACAAAAAATAATGTTAATTGGTTTGTCGCTGT
TTTTATTGCCAATCAGTATGGCAACAGTAAATCGTAATTTTATATGGCAAGATAATACCAAGTTATATGCAGATAGTCTG
AGTAAGTCCCCTGAATTTGCTGCGATGAGCAATGAATTGGGTATTGCTTTAATTGATGAAGGCAAGCTTGCTCAGGCAAC
CCAAATTTTGCAAAAAGGGAAACAACTAAAAACAGCATCGGTGCTCCTTTATATCAATCAGGCTCGTATTTTTATGGCCC
AGGGGGACCTGGCCGGTGCTAGGTCTGAAATGATGAAGGTTTGTTTCGATAAAAATGCTGCCGACACGGAGGCTCTAAAA
ATGTTGGCAACAATTGATGAACAACGTTTGCATAATGGTGGGCAAAGCGAAAGCATTATGCTCGAATTGCTAGATACTTA
CCAAGTATTAATAACAAAAACAAAAAACCCTTACCTTGAGTACCGAGTTGGTCAAATATTTTTGTCTACGGGTAAACATC
AAGACGCTGCTGATTATTTTAGCAGGGCTTATGTACATGCACCTAAAAATGCTTATTACCGAGAAGCTGCTGGAAAGTTG
GTTCGTAAATTGAAGAACAGTGATAAGGAGGGCTGA

Upstream 100 bases:

>100_bases
CTGGAACACATTCTTGCGCAAGGAGGGCGAATTGAGCGAATCGAACCATTGCGTCGAGACCTGGAGCGTTATTTCCTTGA
TGTGGTAAAAGGCACAAACC

Downstream 100 bases:

>100_bases
TTTGCTCGCTTTTCTCCAGCTTGCACGTCCTCATCAGTGGTTGAAAAATATTATTCTCTTCTTTCCGCCATTTCTAGGAG
GGGTTCTGCTTCTGCCTGGA

Product: hypothetical protein

Products: NA

Alternate protein names: TPR Domain-Containing Protein

Number of amino acids: Translated: 571; Mature: 571

Protein sequence:

>571_residues
MNIRKSFQVMLLWMIVLGIFYPAIFAGLNSVDDQKMLYALGELPNRALLDWFRPGQSFYYRPLLSFTFRLDYLLWGQEVS
FYHLENILIHGASATLIFFILRQLVSLQIPQQKDTEWPLIGALLFALHPIVTESVNWISGRTDLLGTFFVLSATLVLLQS
ALRRRLILVIAAAILLFCAIFSKEVMVFSIPAAAFLLWRWSVDAPTSWRIKSLTVLLMPFFFGGSAFIALRWLFYGASAD
LDRLIFKYYYSAYDTVRVFFKVLGFYGKKIVAPLPLNFAIMQVSDHYVWLGIVIFILAVLLFFLRRSATDLILVGWYLIL
PGILIALIGLAWTPLAERYVYLPSAFVVMGIALYGSSVPSQRLQKIMLIGLSLFLLPISMATVNRNFIWQDNTKLYADSL
SKSPEFAAMSNELGIALIDEGKLAQATQILQKGKQLKTASVLLYINQARIFMAQGDLAGARSEMMKVCFDKNAADTEALK
MLATIDEQRLHNGGQSESIMLELLDTYQVLITKTKNPYLEYRVGQIFLSTGKHQDAADYFSRAYVHAPKNAYYREAAGKL
VRKLKNSDKEG

Sequences:

>Translated_571_residues
MNIRKSFQVMLLWMIVLGIFYPAIFAGLNSVDDQKMLYALGELPNRALLDWFRPGQSFYYRPLLSFTFRLDYLLWGQEVS
FYHLENILIHGASATLIFFILRQLVSLQIPQQKDTEWPLIGALLFALHPIVTESVNWISGRTDLLGTFFVLSATLVLLQS
ALRRRLILVIAAAILLFCAIFSKEVMVFSIPAAAFLLWRWSVDAPTSWRIKSLTVLLMPFFFGGSAFIALRWLFYGASAD
LDRLIFKYYYSAYDTVRVFFKVLGFYGKKIVAPLPLNFAIMQVSDHYVWLGIVIFILAVLLFFLRRSATDLILVGWYLIL
PGILIALIGLAWTPLAERYVYLPSAFVVMGIALYGSSVPSQRLQKIMLIGLSLFLLPISMATVNRNFIWQDNTKLYADSL
SKSPEFAAMSNELGIALIDEGKLAQATQILQKGKQLKTASVLLYINQARIFMAQGDLAGARSEMMKVCFDKNAADTEALK
MLATIDEQRLHNGGQSESIMLELLDTYQVLITKTKNPYLEYRVGQIFLSTGKHQDAADYFSRAYVHAPKNAYYREAAGKL
VRKLKNSDKEG
>Mature_571_residues
MNIRKSFQVMLLWMIVLGIFYPAIFAGLNSVDDQKMLYALGELPNRALLDWFRPGQSFYYRPLLSFTFRLDYLLWGQEVS
FYHLENILIHGASATLIFFILRQLVSLQIPQQKDTEWPLIGALLFALHPIVTESVNWISGRTDLLGTFFVLSATLVLLQS
ALRRRLILVIAAAILLFCAIFSKEVMVFSIPAAAFLLWRWSVDAPTSWRIKSLTVLLMPFFFGGSAFIALRWLFYGASAD
LDRLIFKYYYSAYDTVRVFFKVLGFYGKKIVAPLPLNFAIMQVSDHYVWLGIVIFILAVLLFFLRRSATDLILVGWYLIL
PGILIALIGLAWTPLAERYVYLPSAFVVMGIALYGSSVPSQRLQKIMLIGLSLFLLPISMATVNRNFIWQDNTKLYADSL
SKSPEFAAMSNELGIALIDEGKLAQATQILQKGKQLKTASVLLYINQARIFMAQGDLAGARSEMMKVCFDKNAADTEALK
MLATIDEQRLHNGGQSESIMLELLDTYQVLITKTKNPYLEYRVGQIFLSTGKHQDAADYFSRAYVHAPKNAYYREAAGKL
VRKLKNSDKEG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI17560436, Length=178, Percent_Identity=30.3370786516854, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24581187, Length=170, Percent_Identity=30, Blast_Score=65, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 64721; Mature: 64721

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRKSFQVMLLWMIVLGIFYPAIFAGLNSVDDQKMLYALGELPNRALLDWFRPGQSFYY
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCHHHH
RPLLSFTFRLDYLLWGQEVSFYHLENILIHGASATLIFFILRQLVSLQIPQQKDTEWPLI
HHHHHHHHHHHHHEECCCCHHHHHHHHHEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHH
GALLFALHPIVTESVNWISGRTDLLGTFFVLSATLVLLQSALRRRLILVIAAAILLFCAI
HHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSKEVMVFSIPAAAFLLWRWSVDAPTSWRIKSLTVLLMPFFFGGSAFIALRWLFYGASAD
HCCCCEEEECCHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
LDRLIFKYYYSAYDTVRVFFKVLGFYGKKIVAPLPLNFAIMQVSDHYVWLGIVIFILAVL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEEECCCHHHHHHHHHHHHHH
LFFLRRSATDLILVGWYLILPGILIALIGLAWTPLAERYVYLPSAFVVMGIALYGSSVPS
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHEEECCHHHHHHHHHHHCCCCCH
QRLQKIMLIGLSLFLLPISMATVNRNFIWQDNTKLYADSLSKSPEFAAMSNELGIALIDE
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEHHHCCCCCCHHHHCCCCCEEEECC
GKLAQATQILQKGKQLKTASVLLYINQARIFMAQGDLAGARSEMMKVCFDKNAADTEALK
CCHHHHHHHHHCCCCCCCEEEEEEEECCEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHH
MLATIDEQRLHNGGQSESIMLELLDTYQVLITKTKNPYLEYRVGQIFLSTGKHQDAADYF
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHEEECCCCCCHHHHH
SRAYVHAPKNAYYREAAGKLVRKLKNSDKEG
HHHHEECCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNIRKSFQVMLLWMIVLGIFYPAIFAGLNSVDDQKMLYALGELPNRALLDWFRPGQSFYY
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCHHHH
RPLLSFTFRLDYLLWGQEVSFYHLENILIHGASATLIFFILRQLVSLQIPQQKDTEWPLI
HHHHHHHHHHHHHEECCCCHHHHHHHHHEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHH
GALLFALHPIVTESVNWISGRTDLLGTFFVLSATLVLLQSALRRRLILVIAAAILLFCAI
HHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSKEVMVFSIPAAAFLLWRWSVDAPTSWRIKSLTVLLMPFFFGGSAFIALRWLFYGASAD
HCCCCEEEECCHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
LDRLIFKYYYSAYDTVRVFFKVLGFYGKKIVAPLPLNFAIMQVSDHYVWLGIVIFILAVL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEEECCCHHHHHHHHHHHHHH
LFFLRRSATDLILVGWYLILPGILIALIGLAWTPLAERYVYLPSAFVVMGIALYGSSVPS
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHEEECCHHHHHHHHHHHCCCCCH
QRLQKIMLIGLSLFLLPISMATVNRNFIWQDNTKLYADSLSKSPEFAAMSNELGIALIDE
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEHHHCCCCCCHHHHCCCCCEEEECC
GKLAQATQILQKGKQLKTASVLLYINQARIFMAQGDLAGARSEMMKVCFDKNAADTEALK
CCHHHHHHHHHCCCCCCCEEEEEEEECCEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHH
MLATIDEQRLHNGGQSESIMLELLDTYQVLITKTKNPYLEYRVGQIFLSTGKHQDAADYF
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHEEECCCCCCHHHHH
SRAYVHAPKNAYYREAAGKLVRKLKNSDKEG
HHHHEECCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA